Corrigendum to "Urmylation controls Nil1p and Gln3p-dependent expression of nitrogen-catabolite repressed genes in Saccharomyces cerevisiae" [FEBS Lett. 581 (2007) 541-550] (DOI:10.1016/j.febslet.2007.01.019);Urmylation controls Nil1p and Gln3p-dependent expression of nitrogen-catabolite repressed genes in Saccharomyces cerevisiae

FEBS Letters

Volumn 581, Issue 3, 2007, Pages 541-550

  Rubio Texeira, Marta ^a  

^a WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH   (United States)

Author keywords

CIT2; GAP1; GLN3; NIL1; Urmylation

Indexed keywords

FUNGAL PROTEIN; GLUTAMIC ACID; GLUTAMINE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GLN3P; TRANSCRIPTION FACTOR NIL1P; UNCLASSIFIED DRUG;

ARTICLE; CATABOLITE REPRESSION; CIT2 GENE; FUNGAL GENE; GAP1 GENE; GENE REPRESSION; GLN3 GENE; NIL1 GENE; NITROGEN METABOLISM; NONHUMAN; PRIORITY JOURNAL; PROTEIN MODIFICATION; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION REGULATION; URMYLATION;

SACCHAROMYCES CEREVISIAE;

EID: 33846412972     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2007.01.065     Document Type: Erratum

References (55)

1. De Virgilio C., and Loewith R. Cell growth control: little eukaryotes make big contributions. Oncogene 25 (2006) 6392-6415
2. Wullschleger S., Loewith R., and Hall M.N. TOR signaling in growth and metabolism. Cell 124 (2006) 471-484
3. Heitman J., Movva N.R., and Hall M.N. Targets for cell cycle arrest by the immunosuppressant rapamycin in yeast. Science 253 (1991) 905-909
4. Koltin Y., Faucette L., Bergsma D.J., Levy M.A., Cafferkey R., Koser P.L., Johnson R.K., and Livi G.P. Rapamycin sensitivity in Saccharomyces cerevisiae is mediated by a peptidyl-prolyl cis-trans isomerase related to human FK506-binding protein. Mol. Cell. Biol. 11 (1991) 1718-1723
5. Helliwell S.B., Wagner P., Kunz J., Deuter-Reinhard M., Henriquez R., and Hall M.N. TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast. Mol. Biol. Cell 5 (1994) 105-118
6. Loewith R., Jacinto E., Wullschleger S., Lorberg A., Crespo J.L., Bonenfant D., Oppliger W., Jenoe P., and Hall M.N. Two TOR complexes, only one of which is rapamycin sensitive, have distinct roles in cell growth control. Mol. Cell 10 (2002) 457-468
7. Goehring A.S., Rivers D.M., and Sprague Jr. G.F. Mol. Biol. Cell 14 (2003) 4329-4341
8. Hochstrasser M. Biochemistry. All in the ubiquitin family. Nat. Cell Biol. 2 (2000) E153-E157
9. Furukawa K., Mizushima N., Noda T., and Ohsumi Y. A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes. J. Biol. Chem. 275 (2000) 7462-7465
10. Singh S., Tonelli M., Tyler R.C., Bahrami A., Lee M.S., and Markley J.L. Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1. Protein Sci. 14 (2005) 2095-2102
11. Goehring A.S., Rivers D.M., and Sprague Jr. G.F. Attachment of the ubiquitin-related protein Urm1p to the antioxidant protein Ahp1p. Eukaryotic Cell 2 (2003) 930-936
12. Magasanik B., and Kaiser C.A. Nitrogen regulation in Saccharomyces cerevisiae. Gene 290 (2002) 1-18
13. Chen E.J., and Kaiser C.A. Amino acids regulate the intracellular trafficking of the general amino acid permease of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 99 (2002) 14837-14842
14. Grenson M., Hou C., and Crabeel M. Multiplicity of the amino acid permeases in Saccharomyces cerevisiae. IV. Evidence for a general amino acid permease. J. Bacteriol. 103 (1970) 770-777
15. Jauniaux J.C., and Grenson M. GAP1, the general amino acid permease gene of Saccharomyces cerevisiae. Nucleotide sequence, protein similarity with the other bakers yeast amino acid permeases, and nitrogen catabolite repression. Eur. J. Biochem. 190 (1990) 39-44
16. Roberg K.J., Rowley N., and Kaiser C.A. Physiological regulation of membrane protein sorting late in the secretory pathway of Saccharomyces cerevisiae. J. Cell Biol. 137 (1997) 1469-1482
17. Helliwell S.B., Losko S., and Kaiser C.A. Components of a ubiquitin ligase complex specify polyubiquitination and intracellular trafficking of the general amino acid permease. J. Cell Biol. 153 (2001) 649-662
18. Rubio-Texeira M., and Kaiser C.A. Amino acids regulate retrieval of the yeast general amino acid permease from the vacuolar targeting pathway. Mol. Biol. Cell 17 (2006) 3031-3050
19. Daugherty J.R., Rai R., el Berry H.M., and Cooper T.G. Regulatory circuit for responses of nitrogen catabolic gene expression to the GLN3 and DAL80 proteins and nitrogen catabolite repression in Saccharomyces cerevisiae. J. Bacteriol. 175 (1993) 64-73
20. Butow R.A., and Avadhani N.G. Mitochondrial signaling: the retrograde response. Mol. Cell 14 (2004) 1-15
21. Stanbrough M., Rowen D.W., and Magasanik B. Role of the GATA factors Gln3p and Nil1p of Saccharomyces cerevisiae in the expression of nitrogen regulated genes. Proc. Natl. Acad. Sci. USA 92 (1995) 9450-9454
22. Coffman J.A., Rai R., Cunningham T., Svetlov V., and Cooper T.G. Gat1p, a GATA family protein whose production is sensitive to nitrogen catabolite repression, participates in transcriptional activation of nitrogen-catabolic genes in Saccharomyces cerevisiae. Mol. Cell Biol. 16 (1996) 847-858
23. Crespo J.L., Powers T., Fowler B., and Hall M.N. The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine. Proc. Natl. Acad. Sci. USA 99 (2002) 6784-6789
24. Courchesne W.E., and Magasanik B. Regulation of nitrogen assimilation in Saccharomyces cerevisiae: roles of the URE2 and GLN3 genes. J. Bacteriol. 170 (1988) 708-713
25. Kulkarni A.A., Abul-Hamd A.T., Rai R., El Berry H., and Cooper T.G. Gln3p nuclear localization and interaction with Ure2p in Saccharomyces cerevisiae. J. Biol. Chem. 276 (2001) 32136-32144
26. Kuruvilla F.G., Shamji A.F., and Schreiber S.L. Carbon- and nitrogenquality signaling to translation are mediated by distinct GATA-type transcription factors. Proc. Natl. Acad. Sci. USA 98 (2001) 7283-7288
27. Beck T., and Hall M.N. The TOR signalling pathway controls nuclear localization of nutrient-regulated transcription factors. Nature 402 (1999) 689-692
28. Courchesne W.E., and Magasanik B. Ammonia regulation of amino acid permeases in Saccharomyces cerevisiae. Mol. Cell. Biol. 3 (1983) 672-683
29. Longtine M.S., McKenzie A., Demarini D.J., Shah N.G., Wach A., Brachat A., Philippsen P., and Pringle J.R. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14 (1998) 953-961
30. Goldstein A.L., and McCusker J.H. Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15 (1999) 1541-1553
31. Stanbrough M., and Magasanik B. Transcriptional and posttranslational regulation of the general amino acid permease of Saccharomyces cerevisiae. J. Bacteriol. 177 (1995) 94-102
32. Chen E.J., and Kaiser C.A. LST8 negatively regulates amino acid biosynthesis as a component of the TOR pathway. J. Cell Biol. 161 (2003) 333-347
33. Adams A., Gottschling D., and Kaiser C. Methods in Yeast Genetics: a Laboratory Course Manual (1996), Cold Spring Harbor Laboratory Press, New York
34. Roberg K.J., Bickel S., Rowley N., and Kaiser C.A. Control of amino acid permease sorting in the late secretory pathway of Saccharomyces cerevisiae by SEC13, LST4, LST7 and LST8. Genetics 147 (1997) 1569-1584
35. Chan T.F., Carvalho J., Riles L., and Zheng X.F. A chemical genomics approach toward understanding the global functions of the target of rapamycin protein (TOR). Proc. Natl. Acad. Sci. USA 97 (2000) 13227-13232
36. Xie M.W., Jin F., Hwang H., Hwang S., Anand V., Duncan M.C., and Huang J. Insights into TOR function and rapamycin response: chemical genomic profiling by using a high-density cell array method. Proc. Natl. Acad. Sci. USA 102 (2005) 7215-7220
37. Carvalho J., Bertram P.G., Wente S.R., and Zheng X.F. Phosphorylation regulates the interaction between Gln3p and the nuclear import factor Srplp. J. Biol. Chem. 276 (2001) 25359-25365
38. Carvalho J., and Zheng X.F. Domains of Gln3p nteracting with karyopherins, Ure2p, and the target of rapamycin protein. J. Biol. Chem. 278 (2003) 16878-16886
39. Cox K.H., Kulkarni A., Tate J.J., and Cooper T.G. Gln3 phosphorylation and intracellular localization in nutrient limitation and starvation differ from those generated by rapamycin inhibition of Tor 1/2 in Saccharomyces cerevisiae. J. Biol. Chem. 279 (2004) 10270-10278
40. Tate J.J., Rai R., and Cooper T.G. Methionine sulfoximine treatment and carbon starvation elicit Snf1-independent phosphorylation of the transcription activator Gln3 in Saccharomyces cerevisiae. J. Biol. Chem. 280 (2005) 27195-27204
41. Kulkarni A., Buford T.D., Rai R., and Cooper T.G. Differing responses of Gat1 and Gln3 phosphorylation and localization to rapamycin and methionine sulfoximine treatment in Saccharomyces cerevisiae. FEMS Yeast Res. 6 (2006) 218-229
42. Dubois E., and Grenson M. Methylamine/ammonia uptake systems in Saccharomyces cerevisiae: multiplicity and regulation. Mol. Gen. Genet. 175 (1979) 67-76
43. De Craene J.O., Soetens O., and Andre B. The Npr1 kinase controls biosynthetic and endocytic sorting of the yeast Gap1 permease. J. Biol. Chem. 276 (2001) 43939-43948
44. Soetens O., DeCraene J.O., and Andre B. Ubiquitin is required for sorting to the vacuole of the yeast general amino acid permease, Gap1. J. Biol. Chem. 276 (2001) 43949-43957
45. Crespo J.L., Helliwell S.B., Wiederkehr C., Demougin P., Fowler B., Primig M., and Hall M.N. NPR1 kinase and RSP5-BUL1/2 ubiquitin ligase control GLN3-dependent transcription in Saccharomyces cerevisiae. J. Biol. Chem. 279 (2004) 37512-37517
46. Tate J.J., Rai R., and Cooper T.G. Ammonia-specific regulation of G1n3 localization in Saccharomyces cerevisiae by protein kinase Npr1. J. Biol. Chem. 281 (2006) 28460-28469
47. Feller A., Boeckstaens M., Marini A.M., and Dubois E. Transduction of the nitrogen signal activating G1n3-mediated transcription is independent of Npr1 kinase and Rsp5-Bull/2 ubiquitin ligase in Saccharomyces cerevisiae. J. Biol. Chem. 281 (2006) 28546-28554
48. Kunz J., Schneider U., Howald I., Schmidt A., and Hall M.N. HEAT repeats mediate plasma membrane localization of Tor2p in yeast. J. Biol. Chem. 275 (2000) 37011-37020
49. Cox K.H., Tate J.J., and Cooper T.G. Actin cytoskeleton is required for nuclear accumulation of G1n3 in response to nitrogen limitation but not rapamycin treatment in Saccharomyces cerevisiae. J. Biol. Chem. 279 (2004) 19294-19301
50. Magasanik B. The transduction of the nitrogen regulation signal in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 102 (2005) 16537-16538
51. Dubouloz F., Deloche O., Wanke V., Cameroni E., and DeVirgilio C. The TOR and EGO protein complexes orchestrate microautophagy in yeast. Mol. Cell 19 (2005) 15-26
52. Gao M., and Kaiser C.A. A conserved GTPase-containing complex is required for intracellular sorting of the general amino-acid permease in yeast. Nat. Cell Biol. 8 (2006) 657-667
53. 2+-ATPase, is a regulator of the target of rapamycin (TOR) signaling pathway in yeast. Proc. Natl. Acad. Sci. USA 103 (2006) 17480-17485
54. Bertram P.G., Choi J.H., Carvalho J., Ai W., Zeng C., Chan T.F., and Zheng X.F. Tripartite regulation of G1n3p by TOR, Ure2p, and phosphatases. J. Biol. Chem. 275 (2000) 35727-35733
55. Hoppe T., Matuschewski K., Rape M., Schlenker S., Ulrich H.D., and Jentsch S. Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing. Cell 102 (2000) 577-586