-
1
-
-
0002367729
-
MOLPHY version 2.3: Programs for molecular phylogeny based on maximum likelihood
-
Tokyo: Institute of Statistical Mathematics
-
Adachi, J., and Hasegawa, M. (1996). MOLPHY version 2.3: Programs for molecular phylogeny based on maximum likelihood. In Computer Science Monographs 28. (Tokyo: Institute of Statistical Mathematics).
-
(1996)
Computer Science Monographs
, vol.28
-
-
Adachi, J.1
Hasegawa, M.2
-
2
-
-
0034202992
-
The role of sigma factors in plastid transcription
-
Allison, L.A. (2000). The role of sigma factors in plastid transcription. Biochimie 82, 537-548.
-
(2000)
Biochimie
, vol.82
, pp. 537-548
-
-
Allison, L.A.1
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0029165381
-
Investigation of plant organellar DNAs by pulsed-field gel electrophoresis
-
Backert, S., Dorfel, P., and Börner, T. (1995). Investigation of plant organellar DNAs by pulsed-field gel electrophoresis. Curr. Genet. 28, 390-399.
-
(1995)
Curr. Genet.
, vol.28
, pp. 390-399
-
-
Backert, S.1
Dorfel, P.2
Börner, T.3
-
5
-
-
0033860532
-
Participation of nuclear genes in chloroplast gene expression
-
Barkan, A., and Goldschmidt-Clermont, M. (2000). Participation of nuclear genes in chloroplast gene expression. Biochimie 82, 559-572.
-
(2000)
Biochimie
, vol.82
, pp. 559-572
-
-
Barkan, A.1
Goldschmidt-Clermont, M.2
-
6
-
-
0000515116
-
Moving pictures of DNA released upon lysis from bacteria chloroplasts and mitochondria
-
Bendich, A.J. (1991). Moving pictures of DNA released upon lysis from bacteria chloroplasts and mitochondria. Protoplasma 160, 121-130.
-
(1991)
Protoplasma
, vol.160
, pp. 121-130
-
-
Bendich, A.J.1
-
7
-
-
0029870907
-
Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis
-
Bendich, A.J. (1996). Structural analysis of mitochondrial DNA molecules from fungi and plants using moving pictures and pulsed-field gel electrophoresis. J. Mol. Biol. 255, 564-588.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 564-588
-
-
Bendich, A.J.1
-
8
-
-
0025295755
-
Moving pictures and pulsed-field gel electrophoresis show linear DNA molecules from chloroplasts and mitochondria
-
Bendich, A.J., and Smith, S.B. (1990). Moving pictures and pulsed-field gel electrophoresis show linear DNA molecules from chloroplasts and mitochondria. Curr. Genet. 17, 421-425.
-
(1990)
Curr. Genet.
, vol.17
, pp. 421-425
-
-
Bendich, A.J.1
Smith, S.B.2
-
9
-
-
0033866085
-
Sense from nonsense: How the genetic information of chloroplasts is altered by RNA editing
-
Bock, R. (2000). Sense from nonsense: How the genetic information of chloroplasts is altered by RNA editing. Biochimie 82, 549-557.
-
(2000)
Biochimie
, vol.82
, pp. 549-557
-
-
Bock, R.1
-
10
-
-
0028372047
-
Conserved gene clusters in the highly rearranged chloroplast genomes of Chlamydomonas moewusii and Chlamydomonas reinhardtii
-
Boudreau, E., Otis, C., and Turmel, M. (1994). Conserved gene clusters in the highly rearranged chloroplast genomes of Chlamydomonas moewusii and Chlamydomonas reinhardtii. Plant Mol. Biol. 24, 585-602.
-
(1994)
Plant Mol. Biol.
, vol.24
, pp. 585-602
-
-
Boudreau, E.1
Otis, C.2
Turmel, M.3
-
11
-
-
0029152633
-
Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat
-
Boudreau, E., and Turmel, M. (1995). Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat. Plant Mol. Biol. 27, 351-364.
-
(1995)
Plant Mol. Biol.
, vol.27
, pp. 351-364
-
-
Boudreau, E.1
Turmel, M.2
-
12
-
-
0030061828
-
Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonas species featuring multiple dispersed repeats
-
Boudreau, E., and Turmel, M. (1996). Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonas species featuring multiple dispersed repeats. Mol. Biol. Evol. 13, 233-243.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 233-243
-
-
Boudreau, E.1
Turmel, M.2
-
13
-
-
2242478057
-
Organelle genetics and transformation in Chlamydomonas
-
T. Hohn, ed (Vienna: Springer-Verlag)
-
Boynton, J.E., Gillham, N.W., Newman, S.M., and Harris, E.H. (1992). Organelle genetics and transformation in Chlamydomonas. In Cell Organelles, T. Hohn, ed (Vienna: Springer-Verlag), pp. 364-389.
-
(1992)
Cell Organelles
, pp. 364-389
-
-
Boynton, J.E.1
Gillham, N.W.2
Newman, S.M.3
Harris, E.H.4
-
14
-
-
0035205438
-
Plastid transcription: A ménage à trois?
-
Cahoon, A.B., and Stern, D.B. (2001). Plastid transcription: A ménage à trois? Trends Plant Sci. 6, 45-46.
-
(2001)
Trends Plant Sci.
, vol.6
, pp. 45-46
-
-
Cahoon, A.B.1
Stern, D.B.2
-
15
-
-
0030448924
-
Characterization of primary lesions caused by the plastome mutator of Oenothera
-
Chang, T.L., Stoike, L.L., Zarka, D., Schewe, G., Chiu, W.L., Jarrell, D.C., and Sears, B.B. (1996). Characterization of primary lesions caused by the plastome mutator of Oenothera. Curr. Genet. 30, 522-530.
-
(1996)
Curr. Genet.
, vol.30
, pp. 522-530
-
-
Chang, T.L.1
Stoike, L.L.2
Zarka, D.3
Schewe, G.4
Chiu, W.L.5
Jarrell, D.C.6
Sears, B.B.7
-
16
-
-
0036372452
-
Scoring pairwise genomic sequence alignments
-
Chiaromonte, F., Yap, V.B., and Miller, W. (2002). Scoring pairwise genomic sequence alignments. Pac. Symp. Biocomputing 7, 115-126.
-
(2002)
Pac. Symp. Biocomputing
, vol.7
, pp. 115-126
-
-
Chiaromonte, F.1
Yap, V.B.2
Miller, W.3
-
17
-
-
0029022188
-
A zinc-binding region in the β′ subunit of RNA polymerase is involved in anti termination of early transcription of phage HK022
-
Clerget, M., Ding, J.J., and Weisberg, R.A. (1995). A zinc-binding region in the β′ subunit of RNA polymerase is involved in anti termination of early transcription of phage HK022. J. Mol. Biol. 248, 768-780.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 768-780
-
-
Clerget, M.1
Ding, J.J.2
Weisberg, R.A.3
-
18
-
-
0036225307
-
Comparative analysis of chloroplast genomes: Functional annotation, genome-based phylogeny, and deduced evolutionary patterns
-
De Las Rivas, J., Lozano, J.J., and Ortiz, A.R. (2002). Comparative analysis of chloroplast genomes: Functional annotation, genome-based phylogeny, and deduced evolutionary patterns. Genome Res. 12, 567-583.
-
(2002)
Genome Res.
, vol.12
, pp. 567-583
-
-
De Las Rivas, J.1
Lozano, J.J.2
Ortiz, A.R.3
-
19
-
-
0001691242
-
The chloroplast genome exists in multimeric forms
-
Deng, X.W., Wing, R.A., and Gruissem, W. (1989). The chloroplast genome exists in multimeric forms. Proc. Natl. Acad. Sci. USA 86, 4156-4160.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 4156-4160
-
-
Deng, X.W.1
Wing, R.A.2
Gruissem, W.3
-
20
-
-
0035212719
-
Functional genomics of plant photosynthesis in the fast lane using Chlamydomonas reinhardtii
-
Dent, R.M., Han, M., and Niyogi, K.K. (2001). Functional genomics of plant photosynthesis in the fast lane using Chlamydomonas reinhardtii. Trends Plant Sci. 6, 364-371.
-
(2001)
Trends Plant Sci.
, vol.6
, pp. 364-371
-
-
Dent, R.M.1
Han, M.2
Niyogi, K.K.3
-
21
-
-
0031738436
-
Plastid evolution: Origins, diversity, trends
-
Douglas, S.E. (1998). Plastid evolution: Origins, diversity, trends. Curr. Opin. Genet. Dev. 8, 655-661.
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 655-661
-
-
Douglas, S.E.1
-
22
-
-
0030451873
-
Multiple independent losses of the rpoC1 intron in angiosperm chloroplast DNA's
-
Downie, S.R., Llanas, E., and KatzDownie, D.S. (1996). Multiple independent losses of the rpoC1 intron in angiosperm chloroplast DNA's. Syst. Bot. 21, 135-151.
-
(1996)
Syst. Bot.
, vol.21
, pp. 135-151
-
-
Downie, S.R.1
Llanas, E.2
KatzDownie, D.S.3
-
23
-
-
0033199033
-
5′ to 3′ exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways
-
Drager, R.G., Higgs, D.C., Kindle, K.L., and Stern, D.B. (1999). 5′ to 3′ exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways. Plant J. 19, 521-532.
-
(1999)
Plant J.
, vol.19
, pp. 521-532
-
-
Drager, R.G.1
Higgs, D.C.2
Kindle, K.L.3
Stern, D.B.4
-
24
-
-
0020376662
-
Sequence of the chloroplast DNA region of Chlamydomonas reinhardtii containing the gene of the large subunit of ribulose bisphosphate carboxylase and parts of its flanking genes
-
Dron, M., Rahire, M., and Rochaix, J.D. (1982). Sequence of the chloroplast DNA region of Chlamydomonas reinhardtii containing the gene of the large subunit of ribulose bisphosphate carboxylase and parts of its flanking genes. J. Mol. Biol. 162, 775-793.
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 775-793
-
-
Dron, M.1
Rahire, M.2
Rochaix, J.D.3
-
25
-
-
0000302552
-
Chlamydomonas reinhardtii gene for the 32 000 mol. wt. protein of photosystem II contains four large introns and is located entirely within the chloroplast inverted repeat
-
Erickson, J.M., Rahire, M., and Rochaix, J.D. (1984). Chlamydomonas reinhardtii gene for the 32 000 mol. wt. protein of photosystem II contains four large introns and is located entirely within the chloroplast inverted repeat. EMBO J. 3, 2753-2762.
-
(1984)
EMBO J.
, vol.3
, pp. 2753-2762
-
-
Erickson, J.M.1
Rahire, M.2
Rochaix, J.D.3
-
26
-
-
0029379716
-
Two copies of a DNA element, 'Wendy', in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters
-
Fan, W.H., Woelfle, M.A., and Mosig, G. (1995). Two copies of a DNA element, 'Wendy', in the chloroplast chromosome of Chlamydomonas reinhardtii between rearranged gene clusters. Plant Mol. Biol. 29, 63-80.
-
(1995)
Plant Mol. Biol.
, vol.29
, pp. 63-80
-
-
Fan, W.H.1
Woelfle, M.A.2
Mosig, G.3
-
28
-
-
0026587892
-
Chloroplast RNA polymerase genes of Chlamydomonas reinhardtii exhibit an unusual structure and arrangement
-
Fong, S.E., and Surzycki, S.J. (1992a). Chloroplast RNA polymerase genes of Chlamydomonas reinhardtii exhibit an unusual structure and arrangement. Curr. Genet. 21, 485-497.
-
(1992)
Curr. Genet.
, vol.21
, pp. 485-497
-
-
Fong, S.E.1
Surzycki, S.J.2
-
29
-
-
0026503527
-
Organization and structure of plastome psbF, psbL, petG and ORF712 genes in Chlamydomonas reinhardtii
-
Fong, S.E., and Surzycki, S.J. (1992b). Organization and structure of plastome psbF, psbL, petG and ORF712 genes in Chlamydomonas reinhardtii. Curr. Genet. 21, 527-530.
-
(1992)
Curr. Genet.
, vol.21
, pp. 527-530
-
-
Fong, S.E.1
Surzycki, S.J.2
-
30
-
-
0018397754
-
Small repeated sequences in the chloroplast genome of Chlamydomonas reinhardtii
-
Gelvin, S.B., and Howell, S.H. (1979). Small repeated sequences in the chloroplast genome of Chlamydomonas reinhardtii. Mol. Gen. Genet. 173, 315-322.
-
(1979)
Mol. Gen. Genet.
, vol.173
, pp. 315-322
-
-
Gelvin, S.B.1
Howell, S.H.2
-
31
-
-
0025803701
-
A small chloroplast RNA may be required for trans-splicing in Chlamydomonas reinhardtii
-
Goldschmidt-Clermont, M., Choquet, Y., Girard-Bascou, J., Michel, F., Schirmer-Rahire, M., and Rochaix, J.D. (1991). A small chloroplast RNA may be required for trans-splicing in Chlamydomonas reinhardtii. Cell 65, 135-144.
-
(1991)
Cell
, vol.65
, pp. 135-144
-
-
Goldschmidt-Clermont, M.1
Choquet, Y.2
Girard-Bascou, J.3
Michel, F.4
Schirmer-Rahire, M.5
Rochaix, J.D.6
-
32
-
-
0019129609
-
Inheritance of chloroplast DNA in Chlamydomonas reinhardtii
-
Grant, D.M., Gillham, N.W., and Boynton, J.E. (1980). Inheritance of chloroplast DNA in Chlamydomonas reinhardtii. Proc. Natl. Acad. Sci. USA 77, 6067-6071.
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 6067-6071
-
-
Grant, D.M.1
Gillham, N.W.2
Boynton, J.E.3
-
33
-
-
0024025965
-
Extensive restriction fragment length polymorphisms in a new isolate of Chlamydomonas reinhardtii
-
Gross, C.H., Ranum, L.P.W., and Lefebvre, P.A. (1988). Extensive restriction fragment length polymorphisms in a new isolate of Chlamydomonas reinhardtii. Curr. Genet. 13, 503-508.
-
(1988)
Curr. Genet.
, vol.13
, pp. 503-508
-
-
Gross, C.H.1
Ranum, L.P.W.2
Lefebvre, P.A.3
-
34
-
-
0034093493
-
Chlamydomonas reinhardtii and photosynthesis: Genetics to genomics
-
Grossman, A.R. (2000). Chlamydomonas reinhardtii and photosynthesis: Genetics to genomics. Curr. Opin. Plant Biol. 3, 132-137.
-
(2000)
Curr. Opin. Plant Biol.
, vol.3
, pp. 132-137
-
-
Grossman, A.R.1
-
37
-
-
0033513567
-
Small cis-acting sequences that specify secondary structures in a chloroplast mRNA are essential for RNA stability and translation
-
Higgs, D.C., Shapiro, R.S., Kindle, K.L., and Stern, D.B. (1999). Small cis-acting sequences that specify secondary structures in a chloroplast mRNA are essential for RNA stability and translation. Mol. Cell. Biol. 19, 8479-8491.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 8479-8491
-
-
Higgs, D.C.1
Shapiro, R.S.2
Kindle, K.L.3
Stern, D.B.4
-
38
-
-
0029655167
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome
-
Kaneko, T., Tanaka, A., Sato, S., Kotani, H., Sazuka, T., Miyajima, N., Sugiura, M., and Tabata, S. (1995). Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome. DNA Res. 2, 153-166.
-
(1995)
DNA Res.
, vol.2
, pp. 153-166
-
-
Kaneko, T.1
Tanaka, A.2
Sato, S.3
Kotani, H.4
Sazuka, T.5
Miyajima, N.6
Sugiura, M.7
Tabata, S.8
-
39
-
-
0035861514
-
The closest living relatives of land plants
-
Karol, K.G., MoCourt, R.M., Cimino, M.T., and Delwiche, C.F. (2001). The closest living relatives of land plants. Science 294, 2351-2353.
-
(2001)
Science
, vol.294
, pp. 2351-2353
-
-
Karol, K.G.1
MoCourt, R.M.2
Cimino, M.T.3
Delwiche, C.F.4
-
40
-
-
0029811392
-
Hairpins create minute inversions in non-coding regions of chloroplast DNA
-
Kelchner, S.A., and Wendel, J.F. (1996). Hairpins create minute inversions in non-coding regions of chloroplast DNA. Curr. Genet. 30, 259-262.
-
(1996)
Curr. Genet.
, vol.30
, pp. 259-262
-
-
Kelchner, S.A.1
Wendel, J.F.2
-
41
-
-
0040982083
-
A plastid of probable green algal origin in apicomplexan parasites
-
Köhler, S., Delwiche, C.F., Denny, P.W., Tilney, L.G., Webster, P., Wilson, R.J.M., Palmer, J.D., and Roos, D.S. (1997). A plastid of probable green algal origin in apicomplexan parasites. Science 275, 1485-1489.
-
(1997)
Science
, vol.275
, pp. 1485-1489
-
-
Köhler, S.1
Delwiche, C.F.2
Denny, P.W.3
Tilney, L.G.4
Webster, P.5
Wilson, R.J.M.6
Palmer, J.D.7
Roos, D.S.8
-
42
-
-
21344492732
-
From endosymbionts to chloroplasts: Evidence for a single prokaryotic eukaryotic endocytobiosis
-
Kowallik, K.V. (1994). From endosymbionts to chloroplasts: Evidence for a single prokaryotic eukaryotic endocytobiosis. Endocytobiosis Cell Res. 10, 137-149.
-
(1994)
Endocytobiosis Cell Res.
, vol.10
, pp. 137-149
-
-
Kowallik, K.V.1
-
43
-
-
0000221783
-
Structural and transcription analysis of two homologous genes for the P700 chlorophyll a-proteins in Chlamydomonas reinhardtii: Evidence for in vivo trans-splicing
-
Kück, U., Choquet, Y., Schneider, M., Dron, M., and Bennoun, P. (1987). Structural and transcription analysis of two homologous genes for the P700 chlorophyll a-proteins in Chlamydomonas reinhardtii: Evidence for in vivo trans-splicing. EMBO J. 6, 2185-2195.
-
(1987)
EMBO J.
, vol.6
, pp. 2185-2195
-
-
Kück, U.1
Choquet, Y.2
Schneider, M.3
Dron, M.4
Bennoun, P.5
-
44
-
-
0034628462
-
Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution
-
Lemieux, C., Otis, C., and Turmel, M. (2000). Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution. Nature 403, 649-652.
-
(2000)
Nature
, vol.403
, pp. 649-652
-
-
Lemieux, C.1
Otis, C.2
Turmel, M.3
-
45
-
-
0032551759
-
Extraordinary features in the Chlamydomonas reinhardtii chloroplast genome: (1) rps2 as part of a large open reading frame; (2) A C. reinhardtii specific repeat sequence
-
Leu, S. (1998). Extraordinary features in the Chlamydomonas reinhardtii chloroplast genome: (1) rps2 as part of a large open reading frame; (2) A C. reinhardtii specific repeat sequence. Biochim. Biophys. Acta 1365, 541-544.
-
(1998)
Biochim. Biophys. Acta
, vol.1365
, pp. 541-544
-
-
Leu, S.1
-
46
-
-
0035097645
-
Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants
-
Lilly, J.W., Havey, M.J., Jackson, S.A., and Jiang, J. (2001). Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants. Plant Cell 13, 245-254.
-
(2001)
Plant Cell
, vol.13
, pp. 245-254
-
-
Lilly, J.W.1
Havey, M.J.2
Jackson, S.A.3
Jiang, J.4
-
47
-
-
0036844771
-
The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli
-
Lilly, J.W., Maul, J.E., and Stern, D.B. (2002). The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli. Plant Cell 14, 2681-2706.
-
(2002)
Plant Cell
, vol.14
, pp. 2681-2706
-
-
Lilly, J.W.1
Maul, J.E.2
Stern, D.B.3
-
48
-
-
0010956475
-
Interactive analysis of phylogeny and character evolution using the computer program Macclade
-
Maddison, W.P., and Maddison, D.R. (1989). Interactive analysis of phylogeny and character evolution using the computer program Macclade. Folia Primatol. 53, 190-202.
-
(1989)
Folia Primatol.
, vol.53
, pp. 190-202
-
-
Maddison, W.P.1
Maddison, D.R.2
-
49
-
-
0029160870
-
Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
-
Maier, R.M., Neckermann, K., Igloi, G.L., and Koessel, H. (1995). Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J. Mol. Biol. 251, 614-628.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 614-628
-
-
Maier, R.M.1
Neckermann, K.2
Igloi, G.L.3
Koessel, H.4
-
50
-
-
0002160837
-
Gene transfer from organelles to the nucleus: How much, what happens, and why?
-
Martin, W., and Herrmann, R.G. (1998). Gene transfer from organelles to the nucleus: How much, what happens, and why? Plant Physiol. 118, 9-17.
-
(1998)
Plant Physiol.
, vol.118
, pp. 9-17
-
-
Martin, W.1
Herrmann, R.G.2
-
51
-
-
0032516147
-
Gene transfer to the nucleus and the evolution of chloroplasts
-
Martin, W., Stoebe, B., Goremykin, V., Hansmann, S., Hasegawa, M., and Kowallik, K.V. (1998). Gene transfer to the nucleus and the evolution of chloroplasts. Nature 393, 162-165.
-
(1998)
Nature
, vol.393
, pp. 162-165
-
-
Martin, W.1
Stoebe, B.2
Goremykin, V.3
Hansmann, S.4
Hasegawa, M.5
Kowallik, K.V.6
-
52
-
-
0035689472
-
Primary and secondary endosymbiosis and the origin of plastids
-
McFadden, G.I. (2001). Primary and secondary endosymbiosis and the origin of plastids. J. Phycol. 37, 951-959.
-
(2001)
J. Phycol.
, vol.37
, pp. 951-959
-
-
McFadden, G.I.1
-
53
-
-
0027491299
-
A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae)
-
Morton, B.R., and Clegg, M.T. (1993). A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae). Curr. Genet. 24, 357-365.
-
(1993)
Curr. Genet.
, vol.24
, pp. 357-365
-
-
Morton, B.R.1
Clegg, M.T.2
-
54
-
-
0028518555
-
Automated sampling and RNA isolation at room temperature for measurements of circadian rhythms in Chlamydomonas reinhardtii
-
Nikaido, S.S., Locke, C.R., and Weeks, D.P. (1994). Automated sampling and RNA isolation at room temperature for measurements of circadian rhythms in Chlamydomonas reinhardtii. Plant Mol. Biol. 26, 275-284.
-
(1994)
Plant Mol. Biol.
, vol.26
, pp. 275-284
-
-
Nikaido, S.S.1
Locke, C.R.2
Weeks, D.P.3
-
55
-
-
0022546644
-
Chloroplast gene organization deduced from complete sequence of liverwort (Marchantia polymorpha) chloroplast DNA
-
Ohyama, K., et al. (1986). Chloroplast gene organization deduced from complete sequence of liverwort (Marchantia polymorpha) chloroplast DNA. Nature 322, 572-574.
-
(1986)
Nature
, vol.322
, pp. 572-574
-
-
Ohyama, K.1
-
56
-
-
0035854492
-
Mitochondrial DNA from the liverwort Marchantia polymorpha: Circularly permuted linear molecules, head-to-tail concatamers, and a 5′ protein
-
Oldenburg, D.J., and Bendich, A.J. (2001). Mitochondrial DNA from the liverwort Marchantia polymorpha: Circularly permuted linear molecules, head-to-tail concatamers, and a 5′ protein. J. Mol. Biol. 310, 549-562.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 549-562
-
-
Oldenburg, D.J.1
Bendich, A.J.2
-
57
-
-
0022294484
-
Comparative organization of chloroplast genomes
-
Palmer, J.D. (1985). Comparative organization of chloroplast genomes. Annu. Rev. Genet. 19, 325-354.
-
(1985)
Annu. Rev. Genet.
, vol.19
, pp. 325-354
-
-
Palmer, J.D.1
-
58
-
-
0001856419
-
Plastid chromosomes: Structure and evolution
-
I.K. Vasil, ed (San Diego, CA: Academic Press)
-
Palmer, J.D. (1991). Plastid chromosomes: Structure and evolution. In The Molecular Biology of Plastids, I.K. Vasil, ed (San Diego, CA: Academic Press).
-
(1991)
The Molecular Biology of Plastids
-
-
Palmer, J.D.1
-
59
-
-
0031016902
-
Organelle genomes: Going, going, gone!
-
Palmer, J.D. (1997). Organelle genomes: Going, going, gone! Science 275, 790-791.
-
(1997)
Science
, vol.275
, pp. 790-791
-
-
Palmer, J.D.1
-
60
-
-
0011258620
-
Evolution and recombination of the large inverted repeat in Chlamydomonas chloroplast DNA
-
C. Arntzen, L. Bogorad, S. Bonitz, and K. Steinback, eds (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press)
-
Palmer, J.D., Boynton, J.E., Gillham, N.W., and Harris, E.H. (1985). Evolution and recombination of the large inverted repeat in Chlamydomonas chloroplast DNA. In Molecular Biology of the Photosynthetic Apparatus, C. Arntzen, L. Bogorad, S. Bonitz, and K. Steinback, eds (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 269-278.
-
(1985)
Molecular Biology of the Photosynthetic Apparatus
, pp. 269-278
-
-
Palmer, J.D.1
Boynton, J.E.2
Gillham, N.W.3
Harris, E.H.4
-
61
-
-
0030598645
-
Second-hand chloroplasts and the case of the disappearing nucleus
-
Palmer, J.D., and Delwiche, C.F. (1996). Second-hand chloroplasts and the case of the disappearing nucleus. Proc. Natl. Acad. Sci. USA 93, 7432-7435.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 7432-7435
-
-
Palmer, J.D.1
Delwiche, C.F.2
-
62
-
-
0001695670
-
Unusual structure of Geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions and two repeat families
-
Palmer, J.D., Nugent, J.M., and Herbon, L.H. (1987). Unusual structure of Geranium chloroplast DNA: A triple-sized inverted repeat, extensive gene duplications, multiple inversions and two repeat families. Proc. Natl. Acad. Sci. USA 84, 769-773.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 769-773
-
-
Palmer, J.D.1
Nugent, J.M.2
Herbon, L.H.3
-
63
-
-
0020144964
-
Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost
-
Palmer, J.D., and Thompson, W.F. (1982). Chloroplast DNA rearrangements are more frequent when a large inverted repeat sequence is lost. Cell 29, 537-550.
-
(1982)
Cell
, vol.29
, pp. 537-550
-
-
Palmer, J.D.1
Thompson, W.F.2
-
64
-
-
0033199778
-
Why have organelles retained genomes?
-
Race, H.L., Herrmann, R.G., and Martin, W. (1999). Why have organelles retained genomes? Trends Genet. 15, 364-370.
-
(1999)
Trends Genet.
, vol.15
, pp. 364-370
-
-
Race, H.L.1
Herrmann, R.G.2
Martin, W.3
-
65
-
-
0030756511
-
Organization, generation and replication of amphimeric genomes: A review
-
Rayko, E. (1997). Organization, generation and replication of amphimeric genomes: A review. Gene 199, 1-18.
-
(1997)
Gene
, vol.199
, pp. 1-18
-
-
Rayko, E.1
-
66
-
-
51649139576
-
Complete nucleotide sequence of the Porphyra purpurea chloroplast genome
-
Reith, M., and Munholland, J. (1995). Complete nucleotide sequence of the Porphyra purpurea chloroplast genome. Plant Mol. Biol. Rep. 13, 333-335.
-
(1995)
Plant Mol. Biol. Rep.
, vol.13
, pp. 333-335
-
-
Reith, M.1
Munholland, J.2
-
67
-
-
0018880548
-
Restriction fragments from Chlamydomonas chloroplast DNA
-
Rochaix, J.-D. (1980). Restriction fragments from Chlamydomonas chloroplast DNA. Methods Enzymol. 65, 785-795.
-
(1980)
Methods Enzymol.
, vol.65
, pp. 785-795
-
-
Rochaix, J.-D.1
-
68
-
-
0018129047
-
Anatomy of the chloroplast ribosomal DNA of Chlamydomonas reinhardtii
-
Rochaix, J.D., and Malnoe, P. (1978). Anatomy of the chloroplast ribosomal DNA of Chlamydomonas reinhardtii. Cell 15, 661-670.
-
(1978)
Cell
, vol.15
, pp. 661-670
-
-
Rochaix, J.D.1
Malnoe, P.2
-
69
-
-
0029999945
-
The 3′ untranslated regions of chloroplast genes in Chlamydomonas reinhardtii do not serve as efficient transcriptional terminators
-
Rott, R., Drager, R.G., Stern, D.B., and Schuster, G. (1996). The 3′ untranslated regions of chloroplast genes in Chlamydomonas reinhardtii do not serve as efficient transcriptional terminators. Mol. Gen. Genet. 252, 676-683.
-
(1996)
Mol. Gen. Genet.
, vol.252
, pp. 676-683
-
-
Rott, R.1
Drager, R.G.2
Stern, D.B.3
Schuster, G.4
-
70
-
-
0022422375
-
Sequence organization of repetitive elements in the flanking regions of the chloroplast ribosomal unit of Chlamydomonas reinhardtii
-
Schneider, M., Darlix, J.-L., Erickson, J., and Rochaix, J.D. (1985). Sequence organization of repetitive elements in the flanking regions of the chloroplast ribosomal unit of Chlamydomonas reinhardtii. Nucleic Acids Res. 13, 8531-8541.
-
(1985)
Nucleic Acids Res.
, vol.13
, pp. 8531-8541
-
-
Schneider, M.1
Darlix, J.-L.2
Erickson, J.3
Rochaix, J.D.4
-
71
-
-
0034020416
-
PipMaker: A web server for aligning two genomic DNA sequences
-
Schwartz, S., Zhang, Z., Frazer, K.A., Smit, A., Riemer, C., Bouck, J., Gibbs, R., Hardison, R., and Miller, W. (2000). PipMaker: A web server for aligning two genomic DNA sequences. Genome Res. 10, 577-586.
-
(2000)
Genome Res.
, vol.10
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
Smit, A.4
Riemer, C.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
72
-
-
84968989005
-
The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression
-
Shinozaki, K., et al. (1986). The complete nucleotide sequence of the tobacco chloroplast genome: Its gene organization and expression. EMBO J. 5, 2043-2050.
-
(1986)
EMBO J.
, vol.5
, pp. 2043-2050
-
-
Shinozaki, K.1
-
73
-
-
0035984030
-
The treasure trove of algal chloroplast genomes: Surprises in architecture and gene content, and their functional implications
-
Simpson, C.L., and Stern, D.B. (2002). The treasure trove of algal chloroplast genomes: Surprises in architecture and gene content, and their functional implications. Plant Physiol. 129, 957-966.
-
(2002)
Plant Physiol.
, vol.129
, pp. 957-966
-
-
Simpson, C.L.1
Stern, D.B.2
-
74
-
-
0034955041
-
The chloroplast gene ycf9 encodes a photosystem II (PSII) core subunit, PsbZ, that participates in PSII supramolecular architecture
-
Swiatek, M., Kuras, R., Sokolenko, A., Higgs, D., Olive, J., Cinque, G., Muller, B., Eichacker, L.A., Stern, D.B., Bassi, R., Herrmann, R.G., and Wollman, F.A. (2001). The chloroplast gene ycf9 encodes a photosystem II (PSII) core subunit, PsbZ, that participates in PSII supramolecular architecture. Plant Cell 13, 1347-1367.
-
(2001)
Plant Cell
, vol.13
, pp. 1347-1367
-
-
Swiatek, M.1
Kuras, R.2
Sokolenko, A.3
Higgs, D.4
Olive, J.5
Cinque, G.6
Muller, B.7
Eichacker, L.A.8
Stern, D.B.9
Bassi, R.10
Herrmann, R.G.11
Wollman, F.A.12
-
76
-
-
0023636838
-
Stimulation of a Chlamydomonas chloroplast promoter by novobiocin in situ and in E. coli implies regulation by torsional stress in the chloroplast DNA
-
Thompson, R.J., and Mosig, G. (1987). Stimulation of a Chlamydomonas chloroplast promoter by novobiocin in situ and in E. coli implies regulation by torsional stress in the chloroplast DNA. Cell 48, 281-287.
-
(1987)
Cell
, vol.48
, pp. 281-287
-
-
Thompson, R.J.1
Mosig, G.2
-
77
-
-
0025304167
-
Light affects the structure of Chlamydomonas chloroplast chromosomes
-
Thompson, R.J., and Mosig, G. (1990). Light affects the structure of Chlamydomonas chloroplast chromosomes. Nucleic Acids Res. 18, 2625-2631.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 2625-2631
-
-
Thompson, R.J.1
Mosig, G.2
-
78
-
-
0011348284
-
Physical mapping of differences between the chloroplast DNAs of the interfertile algae Chlamydomonas eugametos and Chlamydomonas moewusii
-
Turmel, M., Bellemare, G., and Lemieux, C. (1987). Physical mapping of differences between the chloroplast DNAs of the interfertile algae Chlamydomonas eugametos and Chlamydomonas moewusii. Curr. Genet. 11, 543-552.
-
(1987)
Curr. Genet.
, vol.11
, pp. 543-552
-
-
Turmel, M.1
Bellemare, G.2
Lemieux, C.3
-
79
-
-
0033621040
-
The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
-
Turmel, M., Otis, C., and Lemieux, C. (1999). The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes. Proc. Natl. Acad. Sci. USA 96, 10248-10253.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 10248-10253
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
80
-
-
12644284525
-
Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division
-
Wakasugi, T., et al. (1997). Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: The existence of genes possibly involved in chloroplast division. Proc. Natl. Acad. Sci. USA 94, 5967-5972.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 5967-5972
-
-
Wakasugi, T.1
-
81
-
-
0035711657
-
The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing
-
Wakasugi, T., Tsudzuki, T., and Sugiura, M. (2001). The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing. Photosynth. Res. 70, 107-118.
-
(2001)
Photosynth. Res.
, vol.70
, pp. 107-118
-
-
Wakasugi, T.1
Tsudzuki, T.2
Sugiura, M.3
-
82
-
-
0021020375
-
Both the chloroplast and nuclear genomes of Chlamydomonas reinhardtii share homology with Escherichia coli genes for transcriptional and translational components
-
Watson, J.C., and Surzycki, S.J. (1983). Both the chloroplast and nuclear genomes of Chlamydomonas reinhardtii share homology with Escherichia coli genes for transcriptional and translational components. Curr. Genet. 7, 201-210.
-
(1983)
Curr. Genet.
, vol.7
, pp. 201-210
-
-
Watson, J.C.1
Surzycki, S.J.2
-
83
-
-
0345120954
-
Transcription and the architecture of promoters in chloroplasts
-
Weihe, A., and Börner, T. (1999). Transcription and the architecture of promoters in chloroplasts. Trends Plant Sci. 4, 169-170.
-
(1999)
Trends Plant Sci.
, vol.4
, pp. 169-170
-
-
Weihe, A.1
Börner, T.2
-
84
-
-
0026011747
-
Repetitive sequence-mediated rearrangements in Chlorella ellipsoidea chloroplast DNA: Completion of nucleotide sequence of the large inverted repeat
-
Yamada, T. (1991). Repetitive sequence-mediated rearrangements in Chlorella ellipsoidea chloroplast DNA: Completion of nucleotide sequence of the large inverted repeat. Curr. Genet. 19, 139-147.
-
(1991)
Curr. Genet.
, vol.19
, pp. 139-147
-
-
Yamada, T.1
-
85
-
-
0036845834
-
Proteomic characterization of the small subunit of the Chlamydomonas reinhardtii chloroplast ribosome: Identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5
-
Yamaguchi, K., Prieto, S., Beligni, M.V., Haynes, P.A., McDonald, W.H., Yates, J.R., III, and Mayfield, S.P. (2002). Proteomic characterization of the small subunit of the Chlamydomonas reinhardtii chloroplast ribosome: Identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5. Plant Cell 14, 2957-2974.
-
(2002)
Plant Cell
, vol.14
, pp. 2957-2974
-
-
Yamaguchi, K.1
Prieto, S.2
Beligni, M.V.3
Haynes, P.A.4
McDonald, W.H.5
Yates J.R. III6
Mayfield, S.P.7
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