-
1
-
-
0033920569
-
Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
-
Adachi, J., Waddell, P. J., Martin, W. Hasegawa, M. 2000. Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. J. Mol. Evol. 50 : 348 58.
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 348-58
-
-
Adachi, J.1
Waddell, P.J.2
Martin, W.3
Hasegawa, M.4
-
2
-
-
33750555984
-
Phylogenetic position of the Oedogoniales within the green algae (Chlorophyta) and the evolution of the absolute orientation of the flagellar apparatus
-
Alberghina, J. S., Vigna, M. S. Confalonieri, V. A. 2006. Phylogenetic position of the Oedogoniales within the green algae (Chlorophyta) and the evolution of the absolute orientation of the flagellar apparatus. Plant. Syst. Evol. 261 : 151 63.
-
(2006)
Plant. Syst. Evol.
, vol.261
, pp. 151-63
-
-
Alberghina, J.S.1
Vigna, M.S.2
Confalonieri, V.A.3
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215 : 403 10.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-10
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
33646176060
-
Appendix a - Recipes for freshwater and seawater media
-
In. Andersen, R. A. Ed. Elsevier Academic Press, Burlington, Massachusetts, pp.
-
Andersen, R. A., Berges, J. A., Harrison, P. J. Watanabe, M. M. 2005. Appendix A - Recipes for freshwater and seawater media. In Andersen, R. A. Ed. Algal Culturing Techniques. Elsevier Academic Press, Burlington, Massachusetts, pp. 429 538.
-
(2005)
Algal Culturing Techniques.
, pp. 429-538
-
-
Andersen, R.A.1
Berges, J.A.2
Harrison, P.J.3
Watanabe, M.M.4
-
5
-
-
84981632778
-
Ultrastructure of Draparnaldia glomerata (Chaetophorales, Chlorophyceae). I. the flagellar apparatus of the zoospore
-
Bakker, M. E. Lokhorst, G. M. 1984. Ultrastructure of Draparnaldia glomerata (Chaetophorales, Chlorophyceae). I. The flagellar apparatus of the zoospore. Nord. J. Bot. 4 : 261 73.
-
(1984)
Nord. J. Bot.
, vol.4
, pp. 261-73
-
-
Bakker, M.E.1
Lokhorst, G.M.2
-
6
-
-
33748952472
-
Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum
-
Bélanger, A. S., Brouard, J. S., Charlebois, P., Otis, C., Lemieux, C. Turmel, M. 2006. Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum. Mol. Gen. Genomics 276 : 464 77.
-
(2006)
Mol. Gen. Genomics
, vol.276
, pp. 464-77
-
-
Bélanger, A.S.1
Brouard, J.S.2
Charlebois, P.3
Otis, C.4
Lemieux, C.5
Turmel, M.6
-
7
-
-
0035368207
-
The ins and outs of group II introns
-
Bonen, L. Vogel, J. 2001. The ins and outs of group II introns. Trends Genet. 17 : 322 31.
-
(2001)
Trends Genet.
, vol.17
, pp. 322-31
-
-
Bonen, L.1
Vogel, J.2
-
8
-
-
0031972207
-
Origins and affinities of the filamentous green algal orders Chaetophorales and Oedogoniales based on 18S rRNA gene sequences
-
Booton, G. C., Floyd, G. L. Fuerst, P. A. 1998. Origins and affinities of the filamentous green algal orders Chaetophorales and Oedogoniales based on 18S rRNA gene sequences. J. Phycol. 34 : 312 8.
-
(1998)
J. Phycol.
, vol.34
, pp. 312-8
-
-
Booton, G.C.1
Floyd, G.L.2
Fuerst, P.A.3
-
9
-
-
0034759844
-
Phylogeny of the Chlorophyceae with special reference to the Sphaeropleales: A study of 18S and 26S rDNA data
-
Buchheim, M. A., Michalopulos, E. A. Buchheim, J. A. 2001. Phylogeny of the Chlorophyceae with special reference to the Sphaeropleales: a study of 18S and 26S rDNA data. J. Phycol. 37 : 819 35.
-
(2001)
J. Phycol.
, vol.37
, pp. 819-35
-
-
Buchheim, M.A.1
Michalopulos, E.A.2
Buchheim, J.A.3
-
10
-
-
33750508298
-
Complete plastid genome sequences of Drimys, Liriodendron, and Piper: Implications for the phylogenetic relationships of magnoliids
-
Cai, Z., Penaflor, C., Kuehl, J. V., Leebens-Mack, J., Carlson, J. E., dePamphilis, C. W., Boore, J. L. Jansen, R. K. 2006. Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol. Biol. 6 : 77.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 77
-
-
Cai, Z.1
Penaflor, C.2
Kuehl, J.V.3
Leebens-Mack, J.4
Carlson, J.E.5
Depamphilis, C.W.6
Boore, J.L.7
Jansen, R.K.8
-
11
-
-
33746275499
-
The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands
-
de Cambiaire, J. C., Otis, C., Lemieux, C. Turmel, M. 2006. The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands. BMC Evol. Biol. 6 : 37.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 37
-
-
De Cambiaire, J.C.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
12
-
-
34547108104
-
The chloroplast genome sequence of the green alga Leptosira terrestris: Multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae
-
de Cambiaire, J. C., Otis, C., Lemieux, C. Turmel, M. 2007. The chloroplast genome sequence of the green alga Leptosira terrestris: multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae. BMC Genomics 8 : 213.
-
(2007)
BMC Genomics
, vol.8
, pp. 213
-
-
De Cambiaire, J.C.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
13
-
-
0003437299
-
-
Distributed by the author, Department of Genetics, University of Washington, Seattle.
-
Felsenstein, J. 1995. PHYLIP (Phylogeny Inference Package). Version 3.5. Distributed by the author, Department of Genetics, University of Washington, Seattle.
-
(1995)
PHYLIP (Phylogeny Inference Package). Version 3.5.
-
-
Felsenstein, J.1
-
14
-
-
0002124740
-
Fine structure of the zoospore of Ulothrix belkae with emphasis on the flagellar apparatus
-
Floyd, G. L., Hoops, H. J. Swanson, J. A. 1980. Fine structure of the zoospore of Ulothrix belkae with emphasis on the flagellar apparatus. Protoplasma 104 : 17 32.
-
(1980)
Protoplasma
, vol.104
, pp. 17-32
-
-
Floyd, G.L.1
Hoops, H.J.2
Swanson, J.A.3
-
15
-
-
10544250069
-
Some genetic investigations on Chlamydomonas eugametos
-
Gowans, C. S. 1960. Some genetic investigations on Chlamydomonas eugametos. Z. Vererbungsl. 91 : 63 73.
-
(1960)
Z. Vererbungsl.
, vol.91
, pp. 63-73
-
-
Gowans, C.S.1
-
16
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S. Gascuel, O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 : 696 704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
17
-
-
0028074282
-
The Chlamydomonas chloroplast clpP gene contains translated large insertion sequences and is essential for cell growth
-
Huang, C., Wang, S., Chen, L., Lemieux, C., Otis, C., Turmel, M. Liu, X. Q. 1994. The Chlamydomonas chloroplast clpP gene contains translated large insertion sequences and is essential for cell growth. Mol. Gen. Genet. 244 : 151 9.
-
(1994)
Mol. Gen. Genet.
, vol.244
, pp. 151-9
-
-
Huang, C.1
Wang, S.2
Chen, L.3
Lemieux, C.4
Otis, C.5
Turmel, M.6
Liu, X.Q.7
-
18
-
-
24744449757
-
Identifying the basal angiosperm node in chloroplast genome phylogenies: Sampling one's way out of the Felsenstein zone
-
Leebens-Mack, J., Raubeson, L. A., Cui, L., Kuehl, J. V., Fourcade, M. H., Chumley, T. W., Boore, J. L., Jansen, R. K. Depamphilis, C. W. 2005. Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone. Mol. Biol. Evol. 22 : 1948 63.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1948-63
-
-
Leebens-Mack, J.1
Raubeson, L.A.2
Cui, L.3
Kuehl, J.V.4
Fourcade, M.H.5
Chumley, T.W.6
Boore, J.L.7
Jansen, R.K.8
Depamphilis, C.W.9
-
19
-
-
33846849230
-
A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies
-
Lemieux, C., Otis, C. Turmel, M. 2007. A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies. BMC Biol. 5 : 2.
-
(2007)
BMC Biol.
, vol.5
, pp. 2
-
-
Lemieux, C.1
Otis, C.2
Turmel, M.3
-
20
-
-
17644368841
-
Green algae and the origin of land plants
-
Lewis, L. A. McCourt, R. M. 2004. Green algae and the origin of land plants. Am. J. Bot. 91 : 1535 56.
-
(2004)
Am. J. Bot.
, vol.91
, pp. 1535-56
-
-
Lewis, L.A.1
McCourt, R.M.2
-
21
-
-
0032902530
-
Spectral analysis, systematic bias, and the evolution of chloroplasts
-
Lockhart, P. J., Howe, C. J., Barbrook, A. C., Larkum, A. W. D. Penny, D. 1999. Spectral analysis, systematic bias, and the evolution of chloroplasts. Mol. Biol. Evol. 16 : 573 6.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 573-6
-
-
Lockhart, P.J.1
Howe, C.J.2
Barbrook, A.C.3
Larkum, A.W.D.4
Penny, D.5
-
22
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart, P. J., Steel, M. A., Hendy, M. D. Penny, D. 1994. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11 : 605 12.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-12
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
24
-
-
0001748678
-
Observations on the fine structure of the zoospore and young germling of Stigeoclonium
-
Manton, I. 1964. Observations on the fine structure of the zoospore and young germling of Stigeoclonium. J. Exp. Bot. 15 : 399 411.
-
(1964)
J. Exp. Bot.
, vol.15
, pp. 399-411
-
-
Manton, I.1
-
25
-
-
0002980248
-
Classification of the green algae: A concept based on comparative cytology
-
In. Irvine, D. E. G. John, D. M. Eds. Academic Press, London, pp.
-
Mattox, K. R. Stewart, K. D. 1984. Classification of the green algae: a concept based on comparative cytology. In Irvine, D. E. G. John, D. M. Eds. The Systematics of the Green Algae. Academic Press, London, pp. 29 72.
-
(1984)
The Systematics of the Green Algae.
, pp. 29-72
-
-
Mattox, K.R.1
Stewart, K.D.2
-
26
-
-
0036845754
-
The Chlamydomonas reinhardtii plastid chromosome: Islands of genes in a sea of repeats
-
Maul, J. E., Lilly, J. W., Cui, L., dePamphilis, C. W., Miller, W., Harris, E. H. Stern, D. B. 2002. The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell 14 : 2659 79.
-
(2002)
Plant Cell
, vol.14
, pp. 2659-79
-
-
Maul, J.E.1
Lilly, J.W.2
Cui, L.3
Depamphilis, C.W.4
Miller, W.5
Harris, E.H.6
Stern, D.B.7
-
27
-
-
0040548674
-
A biochemical and ultrastructural evaluation of the taxonomic position of Glaucosphaera vacuolata Korsch
-
McCracken, D. A., Nadakavukaren, M. J. Cain, J. R. 1980. A biochemical and ultrastructural evaluation of the taxonomic position of Glaucosphaera vacuolata Korsch. New Phytol. 86 : 39 44.
-
(1980)
New Phytol.
, vol.86
, pp. 39-44
-
-
McCracken, D.A.1
Nadakavukaren, M.J.2
Cain, J.R.3
-
28
-
-
0016827958
-
The fine structure of the zoospores of Fritschiella tuberosa Iyeng. (Chaetophorineae, Chlorophyceae) with special reference to the flagellar apparatus
-
Melkonian, M. 1975. The fine structure of the zoospores of Fritschiella tuberosa Iyeng. (Chaetophorineae, Chlorophyceae) with special reference to the flagellar apparatus. Protoplasma 86 : 391 4.
-
(1975)
Protoplasma
, vol.86
, pp. 391-4
-
-
Melkonian, M.1
-
29
-
-
0024428420
-
Comparative and functional anatomy of group II catalytic introns - A review
-
Michel, F., Umesono, K. Ozeki, H. 1989. Comparative and functional anatomy of group II catalytic introns - a review. Gene 82 : 5 30.
-
(1989)
Gene
, vol.82
, pp. 5-30
-
-
Michel, F.1
Umesono, K.2
Ozeki, H.3
-
30
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel, F. Westhof, E. 1990. Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216 : 585 610.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
31
-
-
13444309144
-
Accurate and robust phylogeny estimation based on profile distances: A study of the Chlorophyceae (Chlorophyta)
-
Müller, T., Rahmann, S., Dandekar, T. Wolf, M. 2004. Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta). BMC Evol. Biol. 4 : 20.
-
(2004)
BMC Evol. Biol.
, vol.4
, pp. 20
-
-
Müller, T.1
Rahmann, S.2
Dandekar, T.3
Wolf, M.4
-
32
-
-
0344530907
-
Phylogeny of the quadriflagellate Volvocales (Chlorophyceae) based on chloroplast multigene sequences
-
Nozaki, H., Misumi, O. Kuroiwa, T. 2003. Phylogeny of the quadriflagellate Volvocales (Chlorophyceae) based on chloroplast multigene sequences. Mol. Phylogenet. Evol. 29 : 58 66.
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 58-66
-
-
Nozaki, H.1
Misumi, O.2
Kuroiwa, T.3
-
33
-
-
0020963089
-
Flagellar apparatus absolute orientations and the phylogeny of the green algae
-
O'Kelly, C. J. Floyd, G. L. 1984. Flagellar apparatus absolute orientations and the phylogeny of the green algae. Biosystems 16 : 227 51.
-
(1984)
Biosystems
, vol.16
, pp. 227-51
-
-
O'Kelly, C.J.1
Floyd, G.L.2
-
34
-
-
0028121253
-
Ultrastructure and phylogenetic relationships of Chaetopeltidales ord. nov. (Chlorophyta, Chlorophyceae)
-
O'Kelly, C. J., Watanabe, S. Floyd, G. L. 1994. Ultrastructure and phylogenetic relationships of Chaetopeltidales ord. nov. (Chlorophyta, Chlorophyceae). J. Phycol. 30 : 118 28.
-
(1994)
J. Phycol.
, vol.30
, pp. 118-28
-
-
O'Kelly, C.J.1
Watanabe, S.2
Floyd, G.L.3
-
35
-
-
0036084146
-
InBase: The Intein database
-
Perler, F. B. 2002. InBase: the Intein database. Nucleic Acids Res. 30 : 383 4.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 383-4
-
-
Perler, F.B.1
-
36
-
-
0003798517
-
-
Sinauer Associates, Sunderland, Massachusetts, 606. pp.
-
Pickett-Heaps, J. 1975. Green Algae: Structure, Reproduction and Evolution in Selected Genera. Sinauer Associates, Sunderland, Massachusetts, 606 pp.
-
(1975)
Green Algae: Structure, Reproduction and Evolution in Selected Genera.
-
-
Pickett-Heaps, J.1
-
37
-
-
1942501620
-
The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the Chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae
-
Pombert, J. F., Otis, C., Lemieux, C. Turmel, M. 2004. The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the Chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae. Mol. Biol. Evol. 21 : 922 35.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 922-35
-
-
Pombert, J.F.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
38
-
-
23944523620
-
The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages
-
Pombert, J. F., Otis, C., Lemieux, C. Turmel, M. 2005. The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages. Mol. Biol. Evol. 22 : 1903 18.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1903-18
-
-
Pombert, J.F.1
Otis, C.2
Lemieux, C.3
Turmel, M.4
-
39
-
-
0031773680
-
Modeltest: Testing the model of DNA substitution
-
Posada, D. Crandall, K. A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14 : 817 8.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-8
-
-
Posada, D.1
Crandall, K.A.2
-
40
-
-
33750303564
-
The deepest divergences in land plants inferred from phylogenomic evidence
-
Qiu, Y.-L., Li, L., Wang, B., Chen, Z., Knoop, V., Groth-Malonek, M., Dombrovska, O., et al. 2006. The deepest divergences in land plants inferred from phylogenomic evidence. Proc. Natl. Acad. Sci. U. S. A. 103 : 15511 6.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 15511-6
-
-
Qiu, Y.-L.1
Li, L.2
Wang, B.3
Chen, Z.4
Knoop, V.5
Groth-Malonek, M.6
Dombrovska, O.7
-
41
-
-
33845891330
-
The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: Evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts
-
Rogers, M. B., Gilson, P. R., Su, V., McFadden, G. I. Keeling, P. J. 2007. The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts. Mol. Biol. Evol. 24 : 54 62.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 54-62
-
-
Rogers, M.B.1
Gilson, P.R.2
Su, V.3
McFadden, G.I.4
Keeling, P.J.5
-
42
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt, H. A., Strimmer, K., Vingron, M. von Haeseler, A. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 : 502 4.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-4
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
Von Haeseler, A.4
-
43
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51 : 492 508.
-
(2002)
Syst. Biol.
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
44
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira, H. Hasegawa, M. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 : 1114 6.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-6
-
-
Shimodaira, H.1
Hasegawa, M.2
-
45
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira, H. Hasegawa, M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17 : 1246 7.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-7
-
-
Shimodaira, H.1
Hasegawa, M.2
-
46
-
-
0041563979
-
Polyphyletic origin of parallel basal bodies in swimming cells of chlorophycean green algae (Chlorophyta)
-
Shoup, S. Lewis, L. A. 2003. Polyphyletic origin of parallel basal bodies in swimming cells of chlorophycean green algae (Chlorophyta). J. Phycol. 39 : 789 96.
-
(2003)
J. Phycol.
, vol.39
, pp. 789-96
-
-
Shoup, S.1
Lewis, L.A.2
-
47
-
-
0033785582
-
A fundamental problem with amino-acid-sequence characters for phylogenetic analyses
-
Simmons, M. P. 2000. A fundamental problem with amino-acid-sequence characters for phylogenetic analyses. Cladistics 16 : 274 82.
-
(2000)
Cladistics
, vol.16
, pp. 274-82
-
-
Simmons, M.P.1
-
48
-
-
4644350604
-
Genome-scale data, angiosperm relationships, and "ending incongruence": A cautionary tale in phylogenetics
-
Soltis, D. E., Albert, V. A., Savolainen, V., Hilu, K., Qiu, Y. L., Chase, M. W., Farris, J. S., Stefanovic, S., Rice, D. W., Palmer, J. D. Soltis, P. S. 2004. Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics. Trends Plant Sci. 9 : 477 83.
-
(2004)
Trends Plant Sci.
, vol.9
, pp. 477-83
-
-
Soltis, D.E.1
Albert, V.A.2
Savolainen, V.3
Hilu, K.4
Qiu, Y.L.5
Chase, M.W.6
Farris, J.S.7
Stefanovic, S.8
Rice, D.W.9
Palmer, J.D.10
Soltis, P.S.11
-
49
-
-
0034350429
-
Invariable sites models and their use in phylogeny reconstruction
-
Steel, M., Huson, D. Lockhart, P. J. 2000. Invariable sites models and their use in phylogeny reconstruction. Syst. Biol. 49 : 225 32.
-
(2000)
Syst. Biol.
, vol.49
, pp. 225-32
-
-
Steel, M.1
Huson, D.2
Lockhart, P.J.3
-
51
-
-
1342288009
-
LDDist: A Perl module for calculating LogDet pair-wise distances for protein and nucleotide sequences
-
Thollesson, M. 2004. LDDist: a Perl module for calculating LogDet pair-wise distances for protein and nucleotide sequences. Bioinformatics 20 : 416 8.
-
(2004)
Bioinformatics
, vol.20
, pp. 416-8
-
-
Thollesson, M.1
-
52
-
-
0033197514
-
The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: Two radically different evolutionary patterns within green algae
-
Turmel, M., Lemieux, C., Burger, G., Lang, B. F., Otis, C., Plante, I. Gray, M. W. 1999. The complete mitochondrial DNA sequences of Nephroselmis olivacea and Pedinomonas minor: two radically different evolutionary patterns within green algae. Plant Cell 11 : 1717 29.
-
(1999)
Plant Cell
, vol.11
, pp. 1717-29
-
-
Turmel, M.1
Lemieux, C.2
Burger, G.3
Lang, B.F.4
Otis, C.5
Plante, I.6
Gray, M.W.7
-
53
-
-
0042922459
-
The mitochondrial genome of Chara vulgaris: Insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants
-
Turmel, M., Otis, C. Lemieux, C. 2003. The mitochondrial genome of Chara vulgaris: insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants. Plant Cell 15 : 1888 903.
-
(2003)
Plant Cell
, vol.15
, pp. 1888-903
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
54
-
-
27744492579
-
The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales
-
Turmel, M., Otis, C. Lemieux, C. 2005. The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales. BMC Biol. 3 : 22.
-
(2005)
BMC Biol.
, vol.3
, pp. 22
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
55
-
-
33646890404
-
The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants
-
Turmel, M., Otis, C. Lemieux, C. 2006. The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants. Mol. Biol. Evol. 23 : 1324 38.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1324-38
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
56
-
-
34249808815
-
The green algal ancestry of land plants as revealed by the chloroplast genome
-
Turmel, M., Pombert, J. F., Charlebois, P., Otis, C. Lemieux, C. 2007. The green algal ancestry of land plants as revealed by the chloroplast genome. Int. J. Plant Sci. 168 : 679 89.
-
(2007)
Int. J. Plant Sci.
, vol.168
, pp. 679-89
-
-
Turmel, M.1
Pombert, J.F.2
Charlebois, P.3
Otis, C.4
Lemieux, C.5
-
57
-
-
0030959311
-
Identification of an unusual intein in chloroplast ClpP protease of Chlamydomonas eugametos
-
Wang, S. Liu, X. Q. 1997. Identification of an unusual intein in chloroplast ClpP protease of Chlamydomonas eugametos. J. Biol. Chem. 272 : 11869 73.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 11869-73
-
-
Wang, S.1
Liu, X.Q.2
-
58
-
-
51249176369
-
Ultrastructure of the quadriflagellate zoospores of the filamentous green algae Chaetophora incrassata and Pseudoschizomeris caudata (Chaetophorales, Chlorophyceae) with emphasis on the flagellar apparatus
-
Watanabe, S. Floyd, G. L. 1989. Ultrastructure of the quadriflagellate zoospores of the filamentous green algae Chaetophora incrassata and Pseudoschizomeris caudata (Chaetophorales, Chlorophyceae) with emphasis on the flagellar apparatus. Bot. Mag. Tokyo 102 : 533 46.
-
(1989)
Bot. Mag. Tokyo
, vol.102
, pp. 533-46
-
-
Watanabe, S.1
Floyd, G.L.2
-
59
-
-
33744482838
-
Hemiflagellochloris kazakhstanica gen. et sp. nov.: A new coccoid green alga with flagella of considerably unequal lengths from a saline irrigation land in Kazakhstan (Chlorophyceae, Chlorophyta)
-
Watanabe, S., Tsujimura, S., Misono, T., Nakamura, S. Inoue, H. 2006. Hemiflagellochloris kazakhstanica gen. et sp. nov.: a new coccoid green alga with flagella of considerably unequal lengths from a saline irrigation land in Kazakhstan (Chlorophyceae, Chlorophyta). J. Phycol. 42 : 696 706.
-
(2006)
J. Phycol.
, vol.42
, pp. 696-706
-
-
Watanabe, S.1
Tsujimura, S.2
Misono, T.3
Nakamura, S.4
Inoue, H.5
-
60
-
-
0036189709
-
Phylogenetic position of the Sphaeropleaceae (Chlorophyta)
-
Wolf, M., Buchheim, M., Hegewald, E., Krienitz, L. Hepperle, D. 2002. Phylogenetic position of the Sphaeropleaceae (Chlorophyta). Plant Syst. Evol. 230 : 161 71.
-
(2002)
Plant Syst. Evol.
, vol.230
, pp. 161-71
-
-
Wolf, M.1
Buchheim, M.2
Hegewald, E.3
Krienitz, L.4
Hepperle, D.5
-
61
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Bioinformatics 13 : 555 6.
-
(1997)
Bioinformatics
, vol.13
, pp. 555-6
-
-
Yang, Z.1
|