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Volumn 4, Issue , 2006, Pages

The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST DNA; RIBOSOME RNA; COMPLEMENTARY DNA; DNA; MITOCHONDRIAL DNA;

EID: 33644938217     PISSN: 17417007     EISSN: 17417007     Source Type: Journal    
DOI: 10.1186/1741-7007-4-3     Document Type: Article
Times cited : (88)

References (44)
  • 1
    • 84989491914 scopus 로고
    • Summary of green plant phylogeny and classification
    • Bremer K: Summary of green plant phylogeny and classification. Cladistics 1985, 1:369-385.
    • (1985) Cladistics , vol.1 , pp. 369-385
    • Bremer, K.1
  • 2
    • 0002087694 scopus 로고
    • The green algal class Ulvophyceae. An ultrastructural survey and classification
    • Sluiman HJ: The green algal class Ulvophyceae. An ultrastructural survey and classification. Crypt Bot 1989, 1:83-94.
    • (1989) Crypt Bot , vol.1 , pp. 83-94
    • Sluiman, H.J.1
  • 3
    • 17644368841 scopus 로고    scopus 로고
    • Green algae and the origin of land plants
    • Lewis LA, McCourt RM: Green algae and the origin of land plants. Am J Bot 2004, 91(10):1535-1556.
    • (2004) Am J Bot , vol.91 , Issue.10 , pp. 1535-1556
    • Lewis, L.A.1    McCourt, R.M.2
  • 4
    • 0036696405 scopus 로고    scopus 로고
    • Phylogenetic relationships of green algae assigned to the genus Planophila (Chlorophyta): Evidence from 18S rDNA sequence data and ultrastructure
    • Friedl T, O'Kelly CJ: Phylogenetic relationships of green algae assigned to the genus Planophila (Chlorophyta): evidence from 18S rDNA sequence data and ultrastructure. Eur J Phycol 2002, 37:373-384.
    • (2002) Eur J Phycol , vol.37 , pp. 373-384
    • Friedl, T.1    O'Kelly, C.J.2
  • 5
    • 1942501620 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the Chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae
    • Pombert JF, Otis C, Lemieux C, Turmel M: The complete mitochondrial DNA sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) highlights distinctive evolutionary trends in the Chlorophyta and suggests a sister-group relationship between the Ulvophyceae and Chlorophyceae. Mol Biol Evol 2004, 21(5):922-935.
    • (2004) Mol Biol Evol , vol.21 , Issue.5 , pp. 922-935
    • Pombert, J.F.1    Otis, C.2    Lemieux, C.3    Turmel, M.4
  • 6
    • 23944523620 scopus 로고    scopus 로고
    • The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages
    • Pombert JF, Otis C, Lemieux C, Turmel M: The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages. Mol Biol Evol 2005, 22(9):1903-1918.
    • (2005) Mol Biol Evol , vol.22 , Issue.9 , pp. 1903-1918
    • Pombert, J.F.1    Otis, C.2    Lemieux, C.3    Turmel, M.4
  • 7
    • 0034628462 scopus 로고    scopus 로고
    • Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution
    • Lemieux C, Otis C, Turmel M: Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution. Nature 2000, 403(6770):649-652.
    • (2000) Nature , vol.403 , Issue.6770 , pp. 649-652
    • Lemieux, C.1    Otis, C.2    Turmel, M.3
  • 8
    • 0036232908 scopus 로고    scopus 로고
    • Phylogenetic relationships among Streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences
    • Turmel M, Ehara M, Otis C, Lemieux C: Phylogenetic relationships among Streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences. J Phycol 2002, 38:364-375.
    • (2002) J Phycol , vol.38 , pp. 364-375
    • Turmel, M.1    Ehara, M.2    Otis, C.3    Lemieux, C.4
  • 9
    • 0036135441 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants
    • Turmel M, Otis C, Lemieux C: The complete mitochondrial DNA sequence of Mesostigma viride identifies this green alga as the earliest green plant divergence and predicts a highly compact mitochondrial genome in the ancestor of all green plants. Mol Biol Evol 2002, 19(1):24-38.
    • (2002) Mol Biol Evol , vol.19 , Issue.1 , pp. 24-38
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 10
    • 0031764595 scopus 로고    scopus 로고
    • Actin phylogeny identifies Mesostigma viride as a flagellate ancestor of the land plants
    • Bhattacharya D, Weber K, An SS, Berning-Koch W: Actin phylogeny identifies Mesostigma viride as a flagellate ancestor of the land plants. J Mol Evol 1998, 47(5):544-550.
    • (1998) J Mol Evol , vol.47 , Issue.5 , pp. 544-550
    • Bhattacharya, D.1    Weber, K.2    An, S.S.3    Berning-Koch, W.4
  • 11
    • 0033381389 scopus 로고    scopus 로고
    • Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons
    • Marin B, Melkonian M: Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons. Protist 1999, 150(4):399-417.
    • (1999) Protist , vol.150 , Issue.4 , pp. 399-417
    • Marin, B.1    Melkonian, M.2
  • 13
    • 0037143760 scopus 로고    scopus 로고
    • The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants
    • Turmel M, Otis C, Lemieux C: The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants. Proc Natl Acad Sci USA 2002, 99(17):11275-11280.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.17 , pp. 11275-11280
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 14
    • 0033621040 scopus 로고    scopus 로고
    • The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
    • Turmel M, Otis C, Lemieux C: The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes. Proc Natl Acad Sci USA 1999, 96(18):10248-102523.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.18 , pp. 10248-102523
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 19
    • 0010540676 scopus 로고
    • Oltmannsiellopsis, a new genus of marine flagellate (Dunaliellaceae, Chlorophyceae)
    • Chihara M, Inouye I, Takahata N: Oltmannsiellopsis, a new genus of marine flagellate (Dunaliellaceae, Chlorophyceae). Arch Protistenkd 1986, 132:313-324.
    • (1986) Arch Protistenkd , vol.132 , pp. 313-324
    • Chihara, M.1    Inouye, I.2    Takahata, N.3
  • 20
    • 0002453167 scopus 로고
    • The flagellar apparatus in the marine flagellate algal genus Oltmannsiellopsis (Dunaliellales, Chlorophyceae)
    • Lokhorst GM, Star W: The flagellar apparatus in the marine flagellate algal genus Oltmannsiellopsis (Dunaliellales, Chlorophyceae). Arch Protistenkd 1993, 143:13-32.
    • (1993) Arch Protistenkd , vol.143 , pp. 13-32
    • Lokhorst, G.M.1    Star, W.2
  • 21
    • 0010542091 scopus 로고
    • Morphology and ecology of Oltmannsiella virida, sp. nov. (Chlorophyceae: Volvocales)
    • Hargraves PE, Steele RL: Morphology and ecology of Oltmannsiella virida, sp. nov. (Chlorophyceae: Volvocales). Phycologia 1980, 19:96-102.
    • (1980) Phycologia , vol.19 , pp. 96-102
    • Hargraves, P.E.1    Steele, R.L.2
  • 22
    • 33846315982 scopus 로고    scopus 로고
    • Phylogeny of wall-less green flagellates inferred from 18S rDNA sequence data
    • Nakayama T, Watanabe S, Inouye I: Phylogeny of wall-less green flagellates inferred from 18S rDNA sequence data. Phycological Research 1996, 44:151-161.
    • (1996) Phycological Research , vol.44 , pp. 151-161
    • Nakayama, T.1    Watanabe, S.2    Inouye, I.3
  • 23
    • 4043084930 scopus 로고    scopus 로고
    • Gene sequence diversity and the phylogenetic position of algae assigned to the genera Phaeophila and Ochlochaete (Ulvophyceae, Chlorophyta)
    • O'Kelly CJ, Wysor B, Bellows WK: Gene sequence diversity and the phylogenetic position of algae assigned to the genera Phaeophila and Ochlochaete (Ulvophyceae, Chlorophyta). J Phycol 2004, 40:789-799.
    • (2004) J Phycol , vol.40 , pp. 789-799
    • O'Kelly, C.J.1    Wysor, B.2    Bellows, W.K.3
  • 24
    • 0442328803 scopus 로고    scopus 로고
    • Collinsiella (Ulvophyceae, Chlorophyta) and other ulotrichalean taxa with shell-boring sporophytes form a monophyletic clade
    • O'Kelly CJ, Wysor B, Bellows WK: Collinsiella (Ulvophyceae, Chlorophyta) and other ulotrichalean taxa with shell-boring sporophytes form a monophyletic clade. Phycologia 2004, 43(1):41-49.
    • (2004) Phycologia , vol.43 , Issue.1 , pp. 41-49
    • O'Kelly, C.J.1    Wysor, B.2    Bellows, W.K.3
  • 25
    • 1342290814 scopus 로고    scopus 로고
    • Phylogenetic position of Bolbocoleon piliferum (Ulvophyceae, Chlorophyta): Evidence from reproduction, zoospore and gamete ultrastructure, and small subunit rRNA gene sequences
    • O'Kelly CJ, Bellows WK, Wysor B: Phylogenetic position of Bolbocoleon piliferum (Ulvophyceae, Chlorophyta): Evidence from reproduction, zoospore and gamete ultrastructure, and small subunit rRNA gene sequences. J Phycol 2004, 40:209-222.
    • (2004) J Phycol , vol.40 , pp. 209-222
    • O'Kelly, C.J.1    Bellows, W.K.2    Wysor, B.3
  • 26
    • 1842332875 scopus 로고
    • Splitting of the ribosomal RNA operon on chloroplast DNA from Chlorella ellipsoidea
    • Yamada T, Shimaji M: Splitting of the ribosomal RNA operon on chloroplast DNA from Chlorella ellipsoidea. Mol Gen Genet 1987, 208(3):377-383.
    • (1987) Mol Gen Genet , vol.208 , Issue.3 , pp. 377-383
    • Yamada, T.1    Shimaji, M.2
  • 27
    • 0024653980 scopus 로고
    • Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping
    • Manhart JR, Kelly K, Dudock BS, Palmer JD: Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping. Mol Gen Genet 1989, 216(2-3):417-421.
    • (1989) Mol Gen Genet , vol.216 , Issue.2-3 , pp. 417-421
    • Manhart, J.R.1    Kelly, K.2    Dudock, B.S.3    Palmer, J.D.4
  • 28
    • 0029152633 scopus 로고
    • Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat
    • Boudreau E, Turmel M: Gene rearrangements in Chlamydomonas chloroplast DNAs are accounted for by inversions and by the expansion/contraction of the inverted repeat. Plant Mol Biol 1995, 27(2):351-364.
    • (1995) Plant Mol Biol , vol.27 , Issue.2 , pp. 351-364
    • Boudreau, E.1    Turmel, M.2
  • 29
    • 0030061828 scopus 로고    scopus 로고
    • Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonas species featuring multiple dispersed repeats
    • Boudreau E, Turmel M: Extensive gene rearrangements in the chloroplast DNAs of Chlamydomonas species featuring multiple dispersed repeats. Mol Biol Evol 1996, 13(1):233-243.
    • (1996) Mol Biol Evol , vol.13 , Issue.1 , pp. 233-243
    • Boudreau, E.1    Turmel, M.2
  • 30
    • 5444264964 scopus 로고    scopus 로고
    • Chloroplast DNA rearrangements in Campanulaceae: Phylogenetic utility of highly rearranged genomes
    • Cosner ME, Raubeson LA, Jansen RK: Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes. BMC Evol Biol 2004, 4(1):27.
    • (2004) BMC Evol Biol , vol.4 , Issue.1 , pp. 27
    • Cosner, M.E.1    Raubeson, L.A.2    Jansen, R.K.3
  • 31
    • 0024692036 scopus 로고
    • Dispersed repeats and structural reorganization in subclover chloroplast DNA
    • Milligan BG, Hampton JN, Palmer JD: Dispersed repeats and structural reorganization in subclover chloroplast DNA. Mol Biol Evol 1989, 6(4):355-368.
    • (1989) Mol Biol Evol , vol.6 , Issue.4 , pp. 355-368
    • Milligan, B.G.1    Hampton, J.N.2    Palmer, J.D.3
  • 37
    • 0035230042 scopus 로고    scopus 로고
    • A clustering method for repeat analysis in DNA sequences
    • Research0027
    • Volfovsky N, Haas BJ, Salzberg SL: A clustering method for repeat analysis in DNA sequences. Genome Biol 2001, 2(8):Research0027.
    • (2001) Genome Biol , vol.2 , Issue.8
    • Volfovsky, N.1    Haas, B.J.2    Salzberg, S.L.3
  • 38
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 1999, 41:95-98.
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 39
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A: EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 2000, 16(6):276-277.
    • (2000) Trends Genet , vol.16 , Issue.6 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 40
    • 84870663378 scopus 로고    scopus 로고
    • The GNU Image Manipulation Program
    • The GNU Image Manipulation Program [http://www.gimp.org]
  • 41
    • 33644963869 scopus 로고    scopus 로고
    • The Vmatch large scale analysis software
    • The Vmatch large scale analysis software [http://www.vmatch.de]
  • 42
    • 4444302046 scopus 로고    scopus 로고
    • GenAlyzer: Interactive visualization of sequence similarities between entire genomes
    • Choudhuri JV, Schleiermacher C, Kurtz S, Giegerich R: GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinformatics 2004, 20(12):1964-1965.
    • (2004) Bioinformatics , vol.20 , Issue.12 , pp. 1964-1965
    • Choudhuri, J.V.1    Schleiermacher, C.2    Kurtz, S.3    Giegerich, R.4
  • 43
    • 0036211065 scopus 로고    scopus 로고
    • GRIMM: Genome rearrangements web server
    • Tesler G: GRIMM: genome rearrangements web server. Bioinformatics 2002, 18(3):492-493.
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 492-493
    • Tesler, G.1
  • 44
    • 0025678737 scopus 로고
    • Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
    • Michel F, Westhof E: Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J Mol Biol 1990, 216(3):585-610.
    • (1990) J Mol Biol , vol.216 , Issue.3 , pp. 585-610
    • Michel, F.1    Westhof, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.