메뉴 건너뛰기




Volumn 10, Issue 7, 2004, Pages 1097-1107

A horizontally acquired group II intron in the chloroplast psbA gene of a psychrophilic Chlamydomonas: In vitro self-splicing and genetic evidence for maturase activity

Author keywords

Chlamydomonas; Chloroplast; Group IIB2 intron; Horizontal transfer; Maturase; PsbA gene; Psychrophilic; Self splicing

Indexed keywords

AMMONIA; ENDONUCLEASE; GENE PRODUCT; MAGNESIUM ION; MATURASE; RIBOZYME; RNA DIRECTED DNA POLYMERASE; UNCLASSIFIED DRUG;

EID: 3042625932     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.7140604     Document Type: Article
Times cited : (27)

References (56)
  • 1
    • 0345700253 scopus 로고    scopus 로고
    • A group II intron inserted into a bacterial heat-shock operon shows autocatalytic activity and unusual thermostability
    • Adamidi, C., Fedorova, O., and Pyle, A.M. 2003. A group II intron inserted into a bacterial heat-shock operon shows autocatalytic activity and unusual thermostability. Biochemistry 42: 3409-3418.
    • (2003) Biochemistry , vol.42 , pp. 3409-3418
    • Adamidi, C.1    Fedorova, O.2    Pyle, A.M.3
  • 2
    • 0035368207 scopus 로고    scopus 로고
    • The ins and outs of group II introns
    • Bonen, L. and Vogel, J. 2001. The ins and outs of group II introns. Trends Genet. 17: 322-331.
    • (2001) Trends Genet. , vol.17 , pp. 322-331
    • Bonen, L.1    Vogel, J.2
  • 3
    • 0027286169 scopus 로고
    • Characterization of ribonuclease P RNAs from thermophilic bacteria
    • Brown, J.W., Haas, E.S., and Pace, N.R. 1993. Characterization of ribonuclease P RNAs from thermophilic bacteria. Nucleic Acids Res. 21: 671-679.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 671-679
    • Brown, J.W.1    Haas, E.S.2    Pace, N.R.3
  • 4
    • 0035962836 scopus 로고    scopus 로고
    • Intron-specific RNA binding proteins in the chloroplast of the green alga Chlamydomonas reinhardtii
    • Bunse, A.A., Nickelsen, J., and Kück, U. 2001. Intron-specific RNA binding proteins in the chloroplast of the green alga Chlamydomonas reinhardtii. Biochim. Biophys. Acta 1519: 46-54.
    • (2001) Biochim. Biophys. Acta , vol.1519 , pp. 46-54
    • Bunse, A.A.1    Nickelsen, J.2    Kück, U.3
  • 7
    • 0031555476 scopus 로고    scopus 로고
    • A group II self-splicing intron from the brown alga Pylaiella littoralis is active at unusually low magnesium concentrations and forms populations of molecules with a uniform conformation
    • Costa, M., Fontaine, J.-M., Loiseaux-de Goër, S., and Michel, F. 1997. A group II self-splicing intron from the brown alga Pylaiella littoralis is active at unusually low magnesium concentrations and forms populations of molecules with a uniform conformation. J. Mol. Biol. 274: 353-364.
    • (1997) J. Mol. Biol. , vol.274 , pp. 353-364
    • Costa, M.1    Fontaine, J.-M.2    Loiseaux-De Goër, S.3    Michel, F.4
  • 8
    • 0037278926 scopus 로고    scopus 로고
    • ORF-less and reverse-transcriptase-encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs
    • Dai, L. and Zimmerly, S. 2003. ORF-less and reverse-transcriptase- encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs. RNA 9: 14-19.
    • (2003) RNA , vol.9 , pp. 14-19
    • Dai, L.1    Zimmerly, S.2
  • 9
    • 0029927857 scopus 로고    scopus 로고
    • Two competing pathways for self-splicing by group II introns: A quantitative analysis of in vitro reaction rates and products
    • Daniels, D., Michels, W.J., and Pyle, A.M. 1996. Two competing pathways for self-splicing by group II introns: A quantitative analysis of in vitro reaction rates and products. J. Mol. Biol. 256: 31-49.
    • (1996) J. Mol. Biol. , vol.256 , pp. 31-49
    • Daniels, D.1    Michels, W.J.2    Pyle, A.M.3
  • 10
    • 0031015472 scopus 로고    scopus 로고
    • Evidence for light/redox-regulated splicing of psbA pre-RNAs in Chlamydomonas chloroplasts
    • Deshpande, N.N., Bao, Y., and Herrin, D.L. 1997. Evidence for light/redox-regulated splicing of psbA pre-RNAs in Chlamydomonas chloroplasts. RNA 3: 37-48.
    • (1997) RNA , vol.3 , pp. 37-48
    • Deshpande, N.N.1    Bao, Y.2    Herrin, D.L.3
  • 11
    • 0031975280 scopus 로고    scopus 로고
    • A maturase-encoding group III twintron is conserved in deeply rooted euglenoid species: Are group III introns the chicken or the egg?
    • Doetsch, N.A., Thompson, M.D., and Hallick, R.B. 1998. A maturase-encoding group III twintron is conserved in deeply rooted euglenoid species: Are group III introns the chicken or the egg? Mol. Biol. Evol. 15: 76-86.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 76-86
    • Doetsch, N.A.1    Thompson, M.D.2    Hallick, R.B.3
  • 12
    • 0021749978 scopus 로고
    • Lariat structures are in vivo intermediates in yeast pre-mRNA splicing
    • Domdey, H., Apostol, B., Lin, R.-J., Newman, A., Brody, E., and Abelson, J. 1984. Lariat structures are in vivo intermediates in yeast pre-mRNA splicing. Cell 39: 611-621.
    • (1984) Cell , vol.39 , pp. 611-621
    • Domdey, H.1    Apostol, B.2    Lin, R.-J.3    Newman, A.4    Brody, E.5    Abelson, J.6
  • 13
    • 0028014284 scopus 로고
    • Expression of intron-encoded maturase-like polypeptides in potato chloroplasts
    • du Jardin, P., Portetelle, D., Harvengt, L., Dumont, M., and Wathelet, B. 1994. Expression of intron-encoded maturase-like polypeptides in potato chloroplasts. Curr. Genet. 25: 158-163.
    • (1994) Curr. Genet. , vol.25 , pp. 158-163
    • Du Jardin, P.1    Portetelle, D.2    Harvengt, L.3    Dumont, M.4    Wathelet, B.5
  • 14
    • 0029791616 scopus 로고    scopus 로고
    • Double strand break-induced recombination in chloroplasts of Chlamydomonas reinhardtii
    • Durrenberger, F., Thompson, A.J., Herrin, D.L., and Rochaix, J.-D. 1996. Double strand break-induced recombination in chloroplasts of Chlamydomonas reinhardtii. Nucleic Acids Res. 24: 3323-3331.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3323-3331
    • Durrenberger, F.1    Thompson, A.J.2    Herrin, D.L.3    Rochaix, J.-D.4
  • 15
    • 0003158553 scopus 로고
    • Die gattung chlamydomonas ehrenberg (chlamydomonas und die nächstverwandten gattungen II)
    • Ettl, H. 1976. Die Gattung Chlamydomonas Ehrenberg (Chlamydomonas und die nächstverwandten Gattungen II). Nova Hedwigia 49: 1-1122.
    • (1976) Nova Hedwigia , vol.49 , pp. 1-1122
    • Ettl, H.1
  • 17
    • 0027325933 scopus 로고
    • Group II self-splicing introns in bacteria
    • Ferat, J.-L. and Michel, F. 1993. Group II self-splicing introns in bacteria. Nature 364: 358-361.
    • (1993) Nature , vol.364 , pp. 358-361
    • Ferat, J.-L.1    Michel, F.2
  • 18
    • 0031015291 scopus 로고    scopus 로고
    • The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages
    • Fontaine, J.-M., Goux, D., Kloareg, B., and Loiseaux-de Goër, S. 1997. The reverse-transcriptase-like proteins encoded by group II introns in the mitochondrial genome of the brown alga Pylaiella littoralis belong to two different lineages which apparently coevolved with the group II ribosyme lineages. J. Mol. Evol. 44: 33-42.
    • (1997) J. Mol. Evol. , vol.44 , pp. 33-42
    • Fontaine, J.-M.1    Goux, D.2    Kloareg, B.3    Loiseaux-De Goër, S.4
  • 19
    • 0001914227 scopus 로고
    • Culture of phytoplankton for feeding marine invertebrates
    • (eds. W.L. Smith and M.H. Chanley). Plenum Press, New York
    • Guillard, R.R.L. 1975. Culture of phytoplankton for feeding marine invertebrates. In Culture of marine invertebrate animals (eds. W.L. Smith and M.H. Chanley), pp. 26-60. Plenum Press, New York.
    • (1975) Culture of Marine Invertebrate Animals , pp. 26-60
    • Guillard, R.R.L.1
  • 21
    • 0026555469 scopus 로고
    • A maturase-encoding group IIA intron of yeast self-splices in vitro
    • Hebbar, S.K., Belcher, S.M., and Perlman, P.S. 1992. A maturase-encoding group IIA intron of yeast self-splices in vitro. Nucleic Acids Res. 20: 1747-1754.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1747-1754
    • Hebbar, S.K.1    Belcher, S.M.2    Perlman, P.S.3
  • 22
    • 0038475911 scopus 로고    scopus 로고
    • Effect of transcription on folding of the Tetrahymena ribozyme
    • Heilman-Miller, S.L. and Woodson, S.A. 2003. Effect of transcription on folding of the Tetrahymena ribozyme. RNA 9: 722-733.
    • (2003) RNA , vol.9 , pp. 722-733
    • Heilman-Miller, S.L.1    Woodson, S.A.2
  • 23
    • 0023967439 scopus 로고
    • Rapid, reversible staining of northern blots prior to hybridization
    • Herrin, D.L. and Schmidt, G.W. 1988. Rapid, reversible staining of northern blots prior to hybridization. Biotechniques 6: 196-200.
    • (1988) Biotechniques , vol.6 , pp. 196-200
    • Herrin, D.L.1    Schmidt, G.W.2
  • 26
    • 0002226280 scopus 로고    scopus 로고
    • Microbial ecology of snow and freshwater ice with emphasis on snow algae
    • (eds. H.G. Jones et al.). Cambridge University Press, Cambridge, UK
    • Hoham, R.W. and Duval, B. 2001. Microbial ecology of snow and freshwater ice with emphasis on snow algae. In Snow ecology: An interdisciplinary examination of snow-covered ecosystems (eds. H.G. Jones et al.), pp. 168-228. Cambridge University Press, Cambridge, UK.
    • (2001) Snow Ecology: An Interdisciplinary Examination of Snow-covered Ecosystems , pp. 168-228
    • Hoham, R.W.1    Duval, B.2
  • 27
    • 0242637333 scopus 로고    scopus 로고
    • The DIVa maturase binding site in the yeast group II intron aI2 is essential for intron homing but not for in vivo splicing
    • Huang, H.-R., Chao, M.Y., Armstrong, B., Wang, Y., Lambowitz, A.M., and Perlman, P.S. 2003. The DIVa maturase binding site in the yeast group II intron aI2 is essential for intron homing but not for in vivo splicing. Mol. Cell. Biol. 23: 8809-8819.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 8809-8819
    • Huang, H.-R.1    Chao, M.Y.2    Armstrong, B.3    Wang, Y.4    Lambowitz, A.M.5    Perlman, P.S.6
  • 28
    • 0028518627 scopus 로고
    • Circadian regulation of lhc gene transcription in Chlamydomonas reinhardtii
    • Hwang, S. and Herrin, D.L. 1994. Circadian regulation of lhc gene transcription in Chlamydomonas reinhardtii. Plant Mol. Biol. 26: 557-569.
    • (1994) Plant Mol. Biol. , vol.26 , pp. 557-569
    • Hwang, S.1    Herrin, D.L.2
  • 30
    • 0023850025 scopus 로고
    • Group II intron self-splicing: Alternative reaction conditions yield novel products
    • Jarrell, K.A., Peebles, C.L., Dietrich, R.C., Romiti, S.L., and Perlman, P.S. 1988. Group II intron self-splicing: Alternative reaction conditions yield novel products. J. Biol. Chem. 263: 3432-3439.
    • (1988) J. Biol. Chem. , vol.263 , pp. 3432-3439
    • Jarrell, K.A.1    Peebles, C.L.2    Dietrich, R.C.3    Romiti, S.L.4    Perlman, P.S.5
  • 31
    • 0031106356 scopus 로고    scopus 로고
    • Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors
    • Jenkins, B.D., Kulhanek, D.J., and Barkan, A. 1997. Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors. Plant Cell 9: 283-296.
    • (1997) Plant Cell , vol.9 , pp. 283-296
    • Jenkins, B.D.1    Kulhanek, D.J.2    Barkan, A.3
  • 33
    • 0002671710 scopus 로고    scopus 로고
    • Group I and group II ribozymes as RNPs: Clues to the past and guides to the future
    • (eds. R.F. Gesteland et al.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • Lambowitz, A.M., Caprara, M.G., Zimmerly, S., and Perlman, P.S. 1999. Group I and group II ribozymes as RNPs: Clues to the past and guides to the future. In The RNA world, 2nd ed. (eds. R.F. Gesteland et al.), pp. 451-485. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1999) The RNA World, 2nd Ed. , pp. 451-485
    • Lambowitz, A.M.1    Caprara, M.G.2    Zimmerly, S.3    Perlman, P.S.4
  • 35
    • 0028958903 scopus 로고
    • RNA-binding activity of the matK protein encoded by the chloroplast trnK intron from mustard (Sinapis alba L.)
    • Liere, K. and Link, G. 1995. RNA-binding activity of the matK protein encoded by the chloroplast trnK intron from mustard (Sinapis alba L.). Nucleic Acids Res. 23: 917-921.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 917-921
    • Liere, K.1    Link, G.2
  • 36
    • 0029739286 scopus 로고    scopus 로고
    • Effect of temperature on two enzymes from a psychrophilic Chloromonas (Chlorophyta)
    • Loppes, R., Devos, N., Willem, S., Barthélemy, P., and Matagne, R.F. 1996. Effect of temperature on two enzymes from a psychrophilic Chloromonas (Chlorophyta). J. Phycol. 32: 276-278.
    • (1996) J. Phycol. , vol.32 , pp. 276-278
    • Loppes, R.1    Devos, N.2    Willem, S.3    Barthélemy, P.4    Matagne, R.F.5
  • 37
    • 0037126592 scopus 로고    scopus 로고
    • Mechanism of maturase-promoted group II intron splicing
    • Matsuura, M., Noah, J.W., and Lambowitz, A.M. 2001. Mechanism of maturase-promoted group II intron splicing. EMBO J. 20: 7259-7270.
    • (2001) EMBO J. , vol.20 , pp. 7259-7270
    • Matsuura, M.1    Noah, J.W.2    Lambowitz, A.M.3
  • 38
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel, F. and Ferat, J.-L. 1995. Structure and activities of group II introns. Annu. Rev. Biochem. 64: 435-461.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.-L.2
  • 39
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns - A review
    • Michel, F., Umesono, K., and Ozeki, H. 1989. Comparative and functional anatomy of group II catalytic introns - A review. Gene 82: 5-30.
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 40
    • 0032730479 scopus 로고    scopus 로고
    • On the status of seagrass communities in the Black Sea
    • Milchakova, N. 1999. On the status of seagrass communities in the Black Sea. Aquatic Bot. 65: 21-32.
    • (1999) Aquatic Bot. , vol.65 , pp. 21-32
    • Milchakova, N.1
  • 41
    • 0031691542 scopus 로고    scopus 로고
    • Structure and composition of the photochemical apparatus of the Antarctic green alga, Chlamydomonas subcaudata
    • Morgan, R.M., Ivanov, A.G., Priscu, J.C., Maxwell, D.P., and Huner, N.P.A. 1998. Structure and composition of the photochemical apparatus of the Antarctic green alga, Chlamydomonas subcaudata. Photosyn. Res. 56: 303-314.
    • (1998) Photosyn. Res. , vol.56 , pp. 303-314
    • Morgan, R.M.1    Ivanov, A.G.2    Priscu, J.C.3    Maxwell, D.P.4    Huner, N.P.A.5
  • 42
    • 0036935385 scopus 로고    scopus 로고
    • The Antarctic psychrophile, Chlamydomonas subcaudata, is deficient in state I-state II transitions
    • Morgan-Kiss, R.M., Ivanov, A.G., and Huner, N.P.A. 2002. The Antarctic psychrophile, Chlamydomonas subcaudata, is deficient in state I-state II transitions. Planta 214: 435-445.
    • (2002) Planta , vol.214 , pp. 435-445
    • Morgan-Kiss, R.M.1    Ivanov, A.G.2    Huner, N.P.A.3
  • 43
    • 0029109407 scopus 로고
    • The photosynthetic apparatus of phytoplankton from a perenially ice-covered Antarctic lake: Acclimation to an extreme shade environment
    • Neale, P.J. and Priscu, J.C. 1995. The photosynthetic apparatus of phytoplankton from a perenially ice-covered Antarctic lake: Acclimation to an extreme shade environment. Plant Cell Physiol. 36: 253-263.
    • (1995) Plant Cell Physiol. , vol.36 , pp. 253-263
    • Neale, P.J.1    Priscu, J.C.2
  • 44
    • 0141814674 scopus 로고    scopus 로고
    • Active self-splicing group I introns in 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles
    • Nesbo, C.L. and Doolittle, W.F. 2003. Active self-splicing group I introns in 23S rRNA genes of hyperthermophilic bacteria, derived from introns in eukaryotic organelles. Proc. Natl. Acad. Sci. 100: 10806-10811.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 10806-10811
    • Nesbo, C.L.1    Doolittle, W.F.2
  • 45
    • 0034544458 scopus 로고    scopus 로고
    • Cyanobacterial-bacterial mat consortia: Examining the functioning unit of microbial survival and growth in extreme environments
    • Paerl, H.W., Pinckney, J.L., and Steppe, T.F. 2000. Cyanobacterial- bacterial mat consortia: Examining the functioning unit of microbial survival and growth in extreme environments. Environ. Microbiol. 2: 11-26.
    • (2000) Environ. Microbiol. , vol.2 , pp. 11-26
    • Paerl, H.W.1    Pinckney, J.L.2    Steppe, T.F.3
  • 46
    • 0032568012 scopus 로고    scopus 로고
    • Group II intron splicing in vivo by first-step hydrolysis
    • Podar, M., Chu, V.T., Pyle, A.M., and Perlman, P.S. 1998. Group II intron splicing in vivo by first-step hydrolysis. Nature 391: 915-918.
    • (1998) Nature , vol.391 , pp. 915-918
    • Podar, M.1    Chu, V.T.2    Pyle, A.M.3    Perlman, P.S.4
  • 47
    • 0011275604 scopus 로고
    • The biphasic or soil-water culture method for growing algae and flagellata
    • Pringsheim, E.G. 1946. The biphasic or soil-water culture method for growing algae and flagellata. J. Ecol. 33: 193-204.
    • (1946) J. Ecol. , vol.33 , pp. 193-204
    • Pringsheim, E.G.1
  • 48
    • 1342263796 scopus 로고    scopus 로고
    • Recent horizontal intron transfer to a chloroplast genome
    • Sheveleva, E.V. and Hallick, R.B. 2004. Recent horizontal intron transfer to a chloroplast genome. Nucleic Acids Res. 32: 803-810.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 803-810
    • Sheveleva, E.V.1    Hallick, R.B.2
  • 49
    • 0037169083 scopus 로고    scopus 로고
    • Antarctic sea ice - A habitat for extremophiles
    • Thomas, D.N. and Dieckmann, G.S. 2002. Antarctic sea ice - A habitat for extremophiles. Science 295: 641-644.
    • (2002) Science , vol.295 , pp. 641-644
    • Thomas, D.N.1    Dieckmann, G.S.2
  • 50
    • 0034910710 scopus 로고    scopus 로고
    • Coevolution of group II intron RNA structures and their intron-encoded reverse-transcriptases
    • Toor, N., Hausner, G., and Zimmerly, S. 2001. Coevolution of group II intron RNA structures and their intron-encoded reverse-transcriptases. RNA 7: 1142-1152.
    • (2001) RNA , vol.7 , pp. 1142-1152
    • Toor, N.1    Hausner, G.2    Zimmerly, S.3
  • 51
    • 0037099679 scopus 로고    scopus 로고
    • Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing
    • Vogel, J. and Börner, T. 2002. Lariat formation and a hydrolytic pathway in plant chloroplast group II intron splicing. EMBO J. 21: 3794-3803.
    • (2002) EMBO J. , vol.21 , pp. 3794-3803
    • Vogel, J.1    Börner, T.2
  • 52
    • 0030786461 scopus 로고    scopus 로고
    • Precise branch point mapping and quantification of splicing intermediates
    • Vogel, J., Hess, W.R., and Börner, T. 1997. Precise branch point mapping and quantification of splicing intermediates. Nucleic Acids Res. 25: 2030-2031.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2030-2031
    • Vogel, J.1    Hess, W.R.2    Börner, T.3
  • 53
    • 0345062264 scopus 로고    scopus 로고
    • Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants
    • Vogel, J., Börner, T., and Hess, W.R. 1999. Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants. Nucleic Acids Res. 27: 3866-3874.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 3866-3874
    • Vogel, J.1    Börner, T.2    Hess, W.R.3
  • 55
    • 0033180584 scopus 로고    scopus 로고
    • A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA
    • Wank, H., SanFilippo, J., Singh, R.N., Matsuura, M., and Lambowitz, A.M. 1999. A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA. Mol. Cell 4: 239-250.
    • (1999) Mol. Cell , vol.4 , pp. 239-250
    • Wank, H.1    SanFilippo, J.2    Singh, R.N.3    Matsuura, M.4    Lambowitz, A.M.5
  • 56
    • 0025932759 scopus 로고
    • The group IIB intron from the green alga Scenedesmus obliquus mitochondrion: Molecular characterization of the in vitro splicing products
    • Winkler, M. and Kück, U. 1991. The group IIB intron from the green alga Scenedesmus obliquus mitochondrion: Molecular characterization of the in vitro splicing products. Curr. Genet. 20: 495-502.
    • (1991) Curr. Genet. , vol.20 , pp. 495-502
    • Winkler, M.1    Kück, U.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.