-
2
-
-
0034712743
-
The new animal phylogeny: Reliability and implications
-
Adoutte A, Balavoine G, Lartillot N, Lespinet O, Prud'homme B, de Rosa R. 2000. The new animal phylogeny: reliability and implications. Proceedings of the National Academy of Sciences USA 97: 4453-4456.
-
(2000)
Proceedings of the National Academy of Sciences USA
, vol.97
, pp. 4453-4456
-
-
Adoutte, A.1
Balavoine, G.2
Lartillot, N.3
Lespinet, O.4
Prud'homme, B.5
de Rosa, R.6
-
3
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
Aguinaldo AM, Turbeville JM, Linford LS, Rivera MC, Garey JR, Raff RA, Lake JA. 1997. Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 387: 489-493.
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
Raff, R.A.6
Lake, J.A.7
-
4
-
-
1842427267
-
Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase beta-subunit gene
-
Anderson FE, Cordoba AJ, Thollesson M. 2004. Bilaterian phylogeny based on analyses of a region of the sodium-potassium ATPase beta-subunit gene. Journal of Molecular Evolution 58: 252-268.
-
(2004)
Journal of Molecular Evolution
, vol.58
, pp. 252-268
-
-
Anderson, F.E.1
Cordoba, A.J.2
Thollesson, M.3
-
6
-
-
7044229305
-
The dawn of bilaterian animals: The case of acoelomorph flatworms
-
Baguna J, Riutort M. 2004. The dawn of bilaterian animals: the case of acoelomorph flatworms. Bioessays 26: 1046-1057.
-
(2004)
Bioessays
, vol.26
, pp. 1046-1057
-
-
Baguna, J.1
Riutort, M.2
-
7
-
-
33845908745
-
Lack of resolution in the animal phylogeny: Closely spaced cladogeneses or undetected systematic errors?
-
Baurain D, Brinkmann H, Philippe H. 2007. Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? Molecular Biology and Evolution 24: 6-9.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 6-9
-
-
Baurain, D.1
Brinkmann, H.2
Philippe, H.3
-
9
-
-
33749595631
-
A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution
-
Blanquart S, Lartillot N. 2006. A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution. Molecular Biology and Evolution 23: 2058-2071.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 2058-2071
-
-
Blanquart, S.1
Lartillot, N.2
-
10
-
-
47249122561
-
A Site- and Time-Heterogeneous Model of Amino-Acid Replacement
-
Blanquart S, Lartillot N. 2008. A Site- and Time-Heterogeneous Model of Amino-Acid Replacement. Molecular Biology and Evolution 25: 842-858.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 842-858
-
-
Blanquart, S.1
Lartillot, N.2
-
11
-
-
27744524191
-
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
-
Brinkmann H, Giezen M, Zhou Y, Raucourt GP, Philippe H. 2005. An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. Systematic Biology 54: 743-757.
-
(2005)
Systematic Biology
, vol.54
, pp. 743-757
-
-
Brinkmann, H.1
Giezen, M.2
Zhou, Y.3
Raucourt, G.P.4
Philippe, H.5
-
12
-
-
0033015732
-
Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies
-
Brinkmann H, Philippe H. 1999. Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies. Molecular Biology and Evolution 16: 817-825.
-
(1999)
Molecular Biology and Evolution
, vol.16
, pp. 817-825
-
-
Brinkmann, H.1
Philippe, H.2
-
14
-
-
33644536713
-
Tunicates and not cephalochordates are the closest living relatives of vertebrates
-
Delsuc F, Brinkmann H, Chourrout D, Philippe H. 2006. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439: 965-968.
-
(2006)
Nature
, vol.439
, pp. 965-968
-
-
Delsuc, F.1
Brinkmann, H.2
Chourrout, D.3
Philippe, H.4
-
16
-
-
4944257028
-
Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species
-
Dopazo H, Santoyo J, Dopazo J. 2004. Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species. Bioinformatics 20: i116-i121.
-
(2004)
Bioinformatics
, vol.20
-
-
Dopazo, H.1
Santoyo, J.2
Dopazo, J.3
-
17
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
Dunn CW, Hejnol A, Matus DQ, Pang K, Browne WE, Smith SA, Seaver E, Rouse GW, Obst M, Edgecombe GD, Sorensen MV, Haddock SH, Schmidt-Rhaesa A, Okusu A, Kristensen RM, Wheeler WC, Martindale MQ, Giribet G 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452: 745-749.
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.W.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
Smith, S.A.6
Seaver, E.7
Rouse, G.W.8
Obst, M.9
Edgecombe, G.D.10
Sorensen, M.V.11
Haddock, S.H.12
Schmidt-Rhaesa, A.13
Okusu, A.14
Kristensen, R.M.15
Wheeler, W.C.16
Martindale, M.Q.17
Giribet, G.18
-
18
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
-
(1978)
Systematic Zoology
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
19
-
-
3242701529
-
Modeling compositional heterogeneity
-
Foster PG. 2004. Modeling compositional heterogeneity. Systematic Biology 53: 485-495.
-
(2004)
Systematic Biology
, vol.53
, pp. 485-495
-
-
Foster, P.G.1
-
20
-
-
0035029534
-
Maximum-likelihood phylogenetic analysis under a covarion-like model
-
Galtier N. 2001. Maximum-likelihood phylogenetic analysis under a covarion-like model. Molecular Biology and Evolution 18: 866-873.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 866-873
-
-
Galtier, N.1
-
22
-
-
0033159606
-
Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene
-
Groth JG, Barrowclough GF. 1999. Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene. Molecular Phylogenetics and Evolution 12: 115-123.
-
(1999)
Molecular Phylogenetics and Evolution
, vol.12
, pp. 115-123
-
-
Groth, J.G.1
Barrowclough, G.F.2
-
23
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
-
(2003)
Systematic Biology
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
25
-
-
0028921291
-
Evidence from 18S ribosomal DNA that the lophophorates are protostome animals
-
Halanych KM, Bacheller JD, Aguinaldo AM, Liva SM, Hillis DM, Lake JA. 1995. Evidence from 18S ribosomal DNA that the lophophorates are protostome animals. Science 267: 1641-1643.
-
(1995)
Science
, vol.267
, pp. 1641-1643
-
-
Halanych, K.M.1
Bacheller, J.D.2
Aguinaldo, A.M.3
Liva, S.M.4
Hillis, D.M.5
Lake, J.A.6
-
26
-
-
33747339757
-
Resolution of phylogenetic conflict in large data sets by increased taxon sampling
-
Hedtke SM, Townsend TM, Hillis DM. 2006. Resolution of phylogenetic conflict in large data sets by increased taxon sampling. Systematic Biology 55: 522-529.
-
(2006)
Systematic Biology
, vol.55
, pp. 522-529
-
-
Hedtke, S.M.1
Townsend, T.M.2
Hillis, D.M.3
-
27
-
-
0000084234
-
A framework for the quantitative study of evolutionary trees
-
Hendy MD, Penny D. 1989. A framework for the quantitative study of evolutionary trees. Systematic Zoology 38: 297-309.
-
(1989)
Systematic Zoology
, vol.38
, pp. 297-309
-
-
Hendy, M.D.1
Penny, D.2
-
28
-
-
0029834661
-
Inferring complex phytogenies
-
Hillis DM. 1996. Inferring complex phytogenies. Nature 383: 130-131.
-
(1996)
Nature
, vol.383
, pp. 130-131
-
-
Hillis, D.M.1
-
29
-
-
28944447963
-
Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood
-
Hordijk W, Gascuel O. 2005. Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood. Bioinformatics 21: 4338-4347.
-
(2005)
Bioinformatics
, vol.21
, pp. 4338-4347
-
-
Hordijk, W.1
Gascuel, O.2
-
30
-
-
0036097894
-
Testing a covariotide model of DNA substitution
-
Huelsenbeck JP. 2002. Testing a covariotide model of DNA substitution. Molecular Biology and Evolution 19: 698-707.
-
(2002)
Molecular Biology and Evolution
, vol.19
, pp. 698-707
-
-
Huelsenbeck, J.P.1
-
33
-
-
13444259388
-
TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
-
Jobb G, von Haeseler A, Strimmer K. 2004. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evolutionary Biology 4: 18.
-
(2004)
BMC Evolutionary Biology
, vol.4
, pp. 18
-
-
Jobb, G.1
von Haeseler, A.2
Strimmer, K.3
-
34
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN ed, New York: Academic Press
-
Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Munro HN ed. Mammalian protein metabolism. New York: Academic Press.
-
(1969)
Mammalian protein metabolism
-
-
Jukes, T.H.1
Cantor, C.R.2
-
35
-
-
84959806898
-
A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
-
Kluge AG. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Systematic Zoology 38: 7-25.
-
(1989)
Systematic Zoology
, vol.38
, pp. 7-25
-
-
Kluge, A.G.1
-
36
-
-
0030120334
-
Early evolution of the Metazoa and phylogenetic status of diploblasts as inferred from amino acid sequence of elongation factor-1 alpha
-
Kobayashi M, Wada H, Satoh N. 1996. Early evolution of the Metazoa and phylogenetic status of diploblasts as inferred from amino acid sequence of elongation factor-1 alpha. Molecular Phylogenetics and Evolution 5: 414-422.
-
(1996)
Molecular Phylogenetics and Evolution
, vol.5
, pp. 414-422
-
-
Kobayashi, M.1
Wada, H.2
Satoh, N.3
-
37
-
-
7244221755
-
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
-
Kolaczkowski B, Thornton JW. 2004. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Nature 431: 980-984.
-
(2004)
Nature
, vol.431
, pp. 980-984
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
38
-
-
44649184070
-
A mixed branch length model of heterotachy improves phylogenetic accuracy
-
in press
-
Kolaczkowski B, Thornton JW. 2008. A mixed branch length model of heterotachy improves phylogenetic accuracy. Molecular Biology and Evolution. (in press)
-
(2008)
Molecular Biology and Evolution
-
-
Kolaczkowski, B.1
Thornton, J.W.2
-
39
-
-
34248159030
-
Suppression of long-branch attraction artefacts in the animal phytogeny using a site-heterogeneous model
-
Lartillot N, Brinkmann H, Philippe H. 2007. Suppression of long-branch attraction artefacts in the animal phytogeny using a site-heterogeneous model. BMC Evolutionary Biology 7 Suppl 1: S4.
-
(2007)
BMC Evolutionary Biology
, vol.7
, Issue.SUPPL. 1
-
-
Lartillot, N.1
Brinkmann, H.2
Philippe, H.3
-
40
-
-
2442691520
-
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
-
Lartillot N, Philippe H. 2004. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Molecular Biology and Evolution 21: 1095-1109.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1095-1109
-
-
Lartillot, N.1
Philippe, H.2
-
42
-
-
25144447548
-
Poriferan mtDNA and animal phytogeny based on mitochondrial gene arrangements
-
Lavrov DV, Lang BF. 2005. Poriferan mtDNA and animal phytogeny based on mitochondrial gene arrangements. Systematic Biology 54: 651-659.
-
(2005)
Systematic Biology
, vol.54
, pp. 651-659
-
-
Lavrov, D.V.1
Lang, B.F.2
-
44
-
-
33746545695
-
Chaetognath phylogenomics: A protostome with deuterostome-like development
-
Marletaz F, Martin E, Perez Y, Papillon D, Caubit X, Lowe CJ, Freeman B, Fasano L, Dossat C, Wincker P, Weissenbach J, Le Parco Y. 2006. Chaetognath phylogenomics: a protostome with deuterostome-like development. Current Biology 16: R577-578.
-
(2006)
Current Biology
, vol.16
-
-
Marletaz, F.1
Martin, E.2
Perez, Y.3
Papillon, D.4
Caubit, X.5
Lowe, C.J.6
Freeman, B.7
Fasano, L.8
Dossat, C.9
Wincker, P.10
Weissenbach, J.11
Le Parco, Y.12
-
45
-
-
33746533241
-
Broad taxon and gene sampling indicate that chaetognaths are protostomes
-
Matus DQ, Copley RR, Dunn CW, Hejnol A, Eccleston H, Halanych KM, Martindale MQ, Telford MJ. 2006. Broad taxon and gene sampling indicate that chaetognaths are protostomes. Current Biology 16: R575-576.
-
(2006)
Current Biology
, vol.16
-
-
Matus, D.Q.1
Copley, R.R.2
Dunn, C.W.3
Hejnol, A.4
Eccleston, H.5
Halanych, K.M.6
Martindale, M.Q.7
Telford, M.J.8
-
46
-
-
0030794974
-
Molecular evidence that echiurans and pogonophorans are derived annelids
-
McHugh D. 1997. Molecular evidence that echiurans and pogonophorans are derived annelids. Proceedings of the National Academy of Sciences USA 94: 8006-8009.
-
(1997)
Proceedings of the National Academy of Sciences USA
, vol.94
, pp. 8006-8009
-
-
McHugh, D.1
-
47
-
-
34548180091
-
Drop "higher" and "lower" to raise descriptive standards
-
Mogie M. 2007. Drop "higher" and "lower" to raise descriptive standards. Nature 448: 865.
-
(2007)
Nature
, vol.448
, pp. 865
-
-
Mogie, M.1
-
48
-
-
4243140058
-
A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data
-
Pagel M, Meade A. 2004. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Systematic Biology 53: 571-581.
-
(2004)
Systematic Biology
, vol.53
, pp. 571-581
-
-
Pagel, M.1
Meade, A.2
-
49
-
-
33745135433
-
Lophotrochozoan phytogeny assessed with LSU and SSU data: Evidence of lophophorate polyphyly
-
Passamaneck Y, Halanych KM. 2006. Lophotrochozoan phytogeny assessed with LSU and SSU data: evidence of lophophorate polyphyly. Molecular Phylogenetics and Evolution 40: 20-28.
-
(2006)
Molecular Phylogenetics and Evolution
, vol.40
, pp. 20-28
-
-
Passamaneck, Y.1
Halanych, K.M.2
-
50
-
-
17744379783
-
The Opisthokonta and the Ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa
-
Philip GK, Creevey CJ, McInerney JO. 2005. The Opisthokonta and the Ecdysozoa may not be clades: Stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Molecular Biology and Evolution 22: 1175-1184.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1175-1184
-
-
Philip, G.K.1
Creevey, C.J.2
McInerney, J.O.3
-
51
-
-
40249100484
-
Acoel flatworms are not Platyhelminthes: Evidence from phylogenomics
-
Philippe H, Brinkmann H, Martinez P, Riutort M, Baguna J. 2007. Acoel flatworms are not Platyhelminthes: evidence from phylogenomics. PLOS One 2: e717.
-
(2007)
PLOS One
, vol.2
-
-
Philippe, H.1
Brinkmann, H.2
Martinez, P.3
Riutort, M.4
Baguna, J.5
-
52
-
-
0028578194
-
Can the Cambrian explosion be inferred through molecular phytogeny?
-
Philippe H, Chenuil A, Adoutte A. 1994a. Can the Cambrian explosion be inferred through molecular phytogeny? Development 120: S15-S25.
-
(1994)
Development
, vol.120
-
-
Philippe, H.1
Chenuil, A.2
Adoutte, A.3
-
53
-
-
27744441025
-
Phylogenomics
-
Philippe H, Delsuc F, Brinkmann H, Lartillot N. 2005a. Phylogenomics. Annual Review of Ecology, Evolution, and Systematics 36: 541-562.
-
(2005)
Annual Review of Ecology, Evolution, and Systematics
, vol.36
, pp. 541-562
-
-
Philippe, H.1
Delsuc, F.2
Brinkmann, H.3
Lartillot, N.4
-
54
-
-
0000909802
-
The pitfalls of molecular phytogeny based on four species, as illustrated by the Cetacea/Artiodactyla relationships
-
Philippe H, Douzery E. 1994. The pitfalls of molecular phytogeny based on four species, as illustrated by the Cetacea/Artiodactyla relationships. Journal of Mammalian Evolution 2: 133-152.
-
(1994)
Journal of Mammalian Evolution
, vol.2
, pp. 133-152
-
-
Philippe, H.1
Douzery, E.2
-
56
-
-
17744386162
-
Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
-
Philippe H, Lartillot N, Brinkmann H. 2005b. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Molecular Biology and Evolution 22: 1246-1253.
-
(2005)
Molecular Biology and Evolution
, vol.22
, pp. 1246-1253
-
-
Philippe, H.1
Lartillot, N.2
Brinkmann, H.3
-
57
-
-
4143122089
-
Phylogenomics of eukaryotes: Impact of missing data on large alignments
-
Philippe H, Snell EA, Bapteste E, Lopez P, Holland PW, Casane D. 2004. Phylogenomics of eukaryotes: impact of missing data on large alignments. Molecular Biology and Evolution 21: 1740-1752.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1740-1752
-
-
Philippe, H.1
Snell, E.A.2
Bapteste, E.3
Lopez, P.4
Holland, P.W.5
Casane, D.6
-
58
-
-
0028176239
-
Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record
-
Philippe H, Sörhannus U, Baroin A, Perasso R, Gasse F, Adoutte A. 1994b. Comparison of molecular and paleontological data in diatoms suggests a major gap in the fossil record. Journal of Evolutionary Biology 7: 247-265.
-
(1994)
Journal of Evolutionary Biology
, vol.7
, pp. 247-265
-
-
Philippe, H.1
Sörhannus, U.2
Baroin, A.3
Perasso, R.4
Gasse, F.5
Adoutte, A.6
-
61
-
-
12444313041
-
Identifying and removing fast-evolving sites using compatibility analysis: An example from the arthropoda
-
Pisani D. 2004. Identifying and removing fast-evolving sites using compatibility analysis: An example from the arthropoda. Systematic Biology 53: 978-989.
-
(2004)
Systematic Biology
, vol.53
, pp. 978-989
-
-
Pisani, D.1
-
62
-
-
48549092314
-
Inference of phylogenetic relationships among key angiosperm lineages using a compatibility method on a molecular data set
-
Qiu Y-L, Estabrook GF. 2008. Inference of phylogenetic relationships among key angiosperm lineages using a compatibility method on a molecular data set. Journal of Systematics and Evolution 46: 130-141.
-
(2008)
Journal of Systematics and Evolution
, vol.46
, pp. 130-141
-
-
Qiu, Y.-L.1
Estabrook, G.F.2
-
64
-
-
33847656285
-
Detecting and overcoming systematic errors in genome-scale phylogenies
-
Rodriguez-Ezpeleta N, Brinkmann H, Roure B, Lartillot N, Lang BF, Philippe H. 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Systematic Biology 56: 389-399.
-
(2007)
Systematic Biology
, vol.56
, pp. 389-399
-
-
Rodriguez-Ezpeleta, N.1
Brinkmann, H.2
Roure, B.3
Lartillot, N.4
Lang, B.F.5
Philippe, H.6
-
65
-
-
29344441657
-
Animal evolution and the molecular signature of radiations compressed in time
-
Rokas A, Kruger D, Carroll SB. 2005. Animal evolution and the molecular signature of radiations compressed in time. Science 310: 1933-1938.
-
(2005)
Science
, vol.310
, pp. 1933-1938
-
-
Rokas, A.1
Kruger, D.2
Carroll, S.B.3
-
66
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
67
-
-
34248188251
-
SCaFoS: A tool for Selection, Concatenation and Fusion of Sequences for phylogenomics
-
Roure B, Rodriguez-Ezpeleta N, Philippe H. 2007. SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics. BMC Evolutionary Biology 7 Suppl 1: S2.
-
(2007)
BMC Evolutionary Biology
, vol.7
, Issue.SUPPL. 1
-
-
Roure, B.1
Rodriguez-Ezpeleta, N.2
Philippe, H.3
-
68
-
-
15444379114
-
Resolution of a deep animal divergence by the pattern of intron conservation
-
Roy SW, Gilbert W. 2005. Resolution of a deep animal divergence by the pattern of intron conservation. Proceedings of the National Academy of Sciences USA 102: 4403-4408.
-
(2005)
Proceedings of the National Academy of Sciences USA
, vol.102
, pp. 4403-4408
-
-
Roy, S.W.1
Gilbert, W.2
-
69
-
-
0037143719
-
A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians
-
Ruiz-Trillo I, Paps J, Loukota M, Ribera C, Jondelius U, Baguna J, Riutort M. 2002. A phylogenetic analysis of myosin heavy chain type II sequences corroborates that Acoela and Nemertodermatida are basal bilaterians. Proceedings of the National Academy of Sciences USA 99: 11246-11251.
-
(2002)
Proceedings of the National Academy of Sciences USA
, vol.99
, pp. 11246-11251
-
-
Ruiz-Trillo, I.1
Paps, J.2
Loukota, M.3
Ribera, C.4
Jondelius, U.5
Baguna, J.6
Riutort, M.7
-
70
-
-
3142770785
-
Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes
-
Ruiz-Trillo I, Riutort M, Fourcade HM, Baguna J, Boore JL. 2004. Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes. Molecular Phylogenetics and Evolution 33: 321-332.
-
(2004)
Molecular Phylogenetics and Evolution
, vol.33
, pp. 321-332
-
-
Ruiz-Trillo, I.1
Riutort, M.2
Fourcade, H.M.3
Baguna, J.4
Boore, J.L.5
-
71
-
-
0033583163
-
Acoel flatworms: Earliest extant bilaterian Metazoans, not members of Platyhelminthes
-
Ruiz-Trillo I, Riutort M, Littlewood DT, Herniou EA, Baguna J. 1999. Acoel flatworms: earliest extant bilaterian Metazoans, not members of Platyhelminthes. Science 283: 1919-1923.
-
(1999)
Science
, vol.283
, pp. 1919-1923
-
-
Ruiz-Trillo, I.1
Riutort, M.2
Littlewood, D.T.3
Herniou, E.A.4
Baguna, J.5
-
72
-
-
0022833247
-
The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence
-
Saitou N, Nei M. 1986. The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence. Journal of Molecular Evolution 24: 189-204.
-
(1986)
Journal of Molecular Evolution
, vol.24
, pp. 189-204
-
-
Saitou, N.1
Nei, M.2
-
74
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
75
-
-
0034702092
-
Phylogenetic analysis of arthropods using two nuclear protein-encoding genes supports a crustacean + hexapod clade
-
Shultz JW, Regier JC. 2000. Phylogenetic analysis of arthropods using two nuclear protein-encoding genes supports a crustacean + hexapod clade. Proceedings of the Royal Society: Biological Sciences 267: 1011-1019.
-
(2000)
Proceedings of the Royal Society: Biological Sciences
, vol.267
, pp. 1011-1019
-
-
Shultz, J.W.1
Regier, J.C.2
-
76
-
-
0028465508
-
A molecular evolutionary framework for eukaryotic model organisms
-
Sidow A, Thomas WK. 1994. A molecular evolutionary framework for eukaryotic model organisms. Current Biology 4: 596-603.
-
(1994)
Current Biology
, vol.4
, pp. 596-603
-
-
Sidow, A.1
Thomas, W.K.2
-
77
-
-
14644397888
-
RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis A, Ludwig T, Meier H. 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21: 456-463.
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
78
-
-
0035527373
-
Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated?
-
Sullivan J, Swofford DL. 2001. Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated? Systematic Biology 50: 723-729.
-
(2001)
Systematic Biology
, vol.50
, pp. 723-729
-
-
Sullivan, J.1
Swofford, D.L.2
-
79
-
-
0034143979
-
Molecular systematics of the African electric fishes (Mormyroidea: Teleostei) and a model for the evolution of their electric organs
-
Sullivan JP, Lavoue S, Hopkins CD. 2000. Molecular systematics of the African electric fishes (Mormyroidea: Teleostei) and a model for the evolution of their electric organs. Journal of Experimental Biology 203: 665-683.
-
(2000)
Journal of Experimental Biology
, vol.203
, pp. 665-683
-
-
Sullivan, J.P.1
Lavoue, S.2
Hopkins, C.D.3
-
80
-
-
3242801484
-
IQPNNI: Moving fast through tree space and stopping in time
-
Vinh le S, Von Haeseler A. 2004. IQPNNI: moving fast through tree space and stopping in time. Molecular Biology and Evolution 21: 1565-1571.
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 1565-1571
-
-
Vinh le, S.1
Von Haeseler, A.2
-
81
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan S, Goldman N. 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Molecular Biology and Evolution 18: 691-699.
-
(2001)
Molecular Biology and Evolution
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
82
-
-
0025952777
-
Archaeal phylogeny: Reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts
-
Woese CR, Achenbach L, Rouviere P, Mandelco L. 1991. Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts. Systematic and Applied Microbiology 14: 364-371.
-
(1991)
Systematic and Applied Microbiology
, vol.14
, pp. 364-371
-
-
Woese, C.R.1
Achenbach, L.2
Rouviere, P.3
Mandelco, L.4
-
83
-
-
0345874732
-
Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis
-
Wolf YI, Rogozin IB, Koonin EV. 2004. Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis. Genome Research 14: 29-36.
-
(2004)
Genome Research
, vol.14
, pp. 29-36
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Koonin, E.V.3
-
84
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Journal of Molecular Evolution 39: 306-314.
-
(1994)
Journal of Molecular Evolution
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
85
-
-
0030451420
-
Among-site rate variation and its impact on phylogenetic analyses
-
Yang Z. 1996. Among-site rate variation and its impact on phylogenetic analyses. Trends in Ecology & Evolution 11: 367-370.
-
(1996)
Trends in Ecology & Evolution
, vol.11
, pp. 367-370
-
-
Yang, Z.1
-
86
-
-
0030638573
-
How often do wrong models produce better phylogenies?
-
Yang Z. 1997. How often do wrong models produce better phylogenies? Molecular Biology and Evolution 144: 105-108.
-
(1997)
Molecular Biology and Evolution
, vol.144
, pp. 105-108
-
-
Yang, Z.1
-
87
-
-
0028961933
-
On the use of nucleic acid sequences to infer early branchings in the tree of life
-
Yang Z, Roberts D. 1995. On the use of nucleic acid sequences to infer early branchings in the tree of life. Molecular Biology and Evolution 12: 451-458.
-
(1995)
Molecular Biology and Evolution
, vol.12
, pp. 451-458
-
-
Yang, Z.1
Roberts, D.2
-
88
-
-
35848952076
-
Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation
-
Zheng J, Rogozin IB, Koonin EV, Przytycka TM. 2007. Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation. Molecular Biology and Evolution 24: 2583-2592.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 2583-2592
-
-
Zheng, J.1
Rogozin, I.B.2
Koonin, E.V.3
Przytycka, T.M.4
-
90
-
-
0036699481
-
Increased taxon sampling greatly reduces phylogenetic error
-
Zwickl DJ, Hillis DM. 2002. Increased taxon sampling greatly reduces phylogenetic error. Systematic Biology 51: 588-598.
-
(2002)
Systematic Biology
, vol.51
, pp. 588-598
-
-
Zwickl, D.J.1
Hillis, D.M.2
|