Chapter 8 Spectral imaging and its use in the measurement of Förster resonance energy transfer in living cells

Laboratory Techniques in Biochemistry and Molecular Biology

Volumn 33, Issue C, 2009, Pages 351-394

  Vogel, Steven S ^a   Blank, Paul S ^b   Koushik, Srinagesh V ^a   Thaler, Christopher ^a  

^a NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM   (United States)

^b EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 59249106090     PISSN: 00757535     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0075-7535(08)00008-9     Document Type: Review

References (49)

1. Förster T. Intermolecular energy migration and fluorescence. Ann. Phys. 2 (1948) 55-75
2. Dickinson M.E., Bearman G., Tille S., Lansford R., and Fraser S.E. Multi-spectral imaging and linear unmixing add a whole new dimension to laser scanning fluorescence microscopy. Biotechniques 31 (2001) 1272-1278
3. Haraguchi T., Shimi T., Koujin T., Hashiguchi N., and Hiraoka Y. Spectral imaging fluorescence microscopy. Genes Cells 7 (2002) 881-887
4. Zimmermann T., Rietdorf J., and Pepperkok R. Spectral imaging and its applications in live cell microscopy. FEBS Lett. 546 (2003) 87-92
5. Harpur A.G., Wouters F.S., and Bastiaens P.I. Imaging FRET between spectrally similar GFP molecules in single cells. Nat. Biotechnol. 19 (2001) 167-169
6. LaMorte V.J., Zoumi A., and Tromberg B.J. Spectroscopic approach for monitoring two-photon excited fluorescence resonance energy transfer from homodimers at the subcellular level. J. Biomed. Opt. 8 (2003) 357-361
7. Neher R.A., and Neher E. Applying spectral fingerprinting to the analysis of FRET images. Microsc. Res. Technol. 64 (2004) 185-195
8. Koepke J., Hu X., Muenke C., Schulten K., and Michel H. The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum. Structure 4 (1996) 581-597
9. Fung B.K., and Stryer L. Surface density determination in membranes by fluorescence energy transfer. Biochemistry 17 (1978) 5241-5248
10. James J.R., Oliveira M.I., Carmo A.M., Iaboni A., and Davis S.J. A rigorous experimental framework for detecting protein oligomerization using bioluminescence resonance energy transfer. Nat. Methods 3 (2006) 1001-1006
11. Vogel S.S., Thaler C., and Koushik S.V. Fanciful FRET. Sci. STKE 2006 (2006) re2
12. Thaler C., Koushik S.V., Blank P.S., and Vogel S.S. Quantitative multiphoton spectral imaging and its use for measuring resonance energy transfer. Biophys. J. 89 (2005) 2736-2749
13. Ecker R.C., de Martin R., Steiner G.E., and Schmid J.A. Application of spectral imaging microscopy in cytomics and fluorescence resonance energy transfer (FRET) analysis. Cytometry A 59 (2004) 172-181
14. Harris A.T. Spectral mapping tools from the earth sciences applied to spectral microscopy data. Cytometry A 69 (2006) 872-879
15. Larson J.M. The Nikon C1si combines high spectral resolution, high sensitivity, and high acquisition speed. Cytometry A 69 (2006) 825-834
16. Levenson R.M. Spectral imaging perspective on cytomics. Cytometry A 69 (2006) 592-600
17. Zimmermann T. Spectral imaging and linear unmixing in light microscopy. Adv. Biochem. Eng. Biotechnol. 95 (2005) 245-265
18. Zucker R.M., Rigby P., Clements I., Salmon W., and Chua M. Reliability of confocal microscopy spectral imaging systems: Use of multispectral beads. Cytometry A 71 (2007) 174-189
19. Rizzo M.A., Springer G.H., Granada B., and Piston D.W. An improved cyan fluorescent protein variant useful for FRET. Nat. Biotechnol. 22 (2004) 445-449
20. Nagai T., Ibata K., Park E.S., Kubota M., Mikoshiba K., and Miyawaki A. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat. Biotechnol. 20 (2002) 87-90
21. Zacharias D.A., Violin J.D., Newton A.C., and Tsien R.Y. Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells. Science 296 (2002) 913-916
22. McNamara G., Gupta A., Reynaert J., Coates T.D., and Boswell C. Spectral imaging microscopy web sites and data. Cytometry A 69 (2006) 863-871
23. Lakowicz J.R. Principles of Fluorescence Spectroscopy (1999), Kluwer/Plenum, New York
24. Thaler C., and Vogel S.S. Quantitative linear unmixing of CFP and YFP from spectral images acquired with two-photon excitation. Cytometry A 69 (2006) 904-911
25. Press W.H., Flannery B.P., Teukolsky S.A., and Vetterling W.T. Numerical Recipes (1986), Cambridge University Press, Cambridge
26. Denk W., Strickler J.H., and Webb W.W. Two-photon laser scanning fluorescence microscopy. Science 248 (1990) 73-76
27. Patterson G.H., and Piston D.W. Photobleaching in two-photon excitation microscopy. Biophys. J. 78 (2000) 2159-2162
28. Neher R., and Neher E. Optimizing imaging parameters for the separation of multiple labels in a fluorescence image. J. Microsc. 213 (2004) 46-62
29. Berney C., and Danuser G. FRET or no FRET: A quantitative comparison. Biophys. J. 84 (2003) 3992-4010
30. Gu Y., Di W.L., Kelsell D.P., and Zicha D. Quantitative fluorescence resonance energy transfer (FRET) measurement with acceptor photobleaching and spectral unmixing. J. Microsc. 215 (2004) 162-173
31. Hanley Q.S., Murray P.I., and Forde T.S. Microspectroscopic fluorescence analysis with prism-based imaging spectrometers: Review and current studies. Cytometry A 69 (2006) 759-766
32. Kenworthy A.K. Imaging protein-protein interactions using fluorescence resonance energy transfer microscopy. Methods 24 (2001) 289-296
33. Raicu V., Jansma D.B., Miller R.J., and Friesen J.D. Protein interaction quantified in vivo by spectrally resolved fluorescence resonance energy transfer. Biochem. J. 385 (2005) 265-277
34. Vermeer J.E., Van Munster E.B., Vischer N.O., and Gadella Jr. T.W. Probing plasma membrane microdomains in cowpea protoplasts using lipidated GFP-fusion proteins and multimode FRET microscopy. J. Microsc. 214 (2004) 190-200
35. Bastiaens P.I., and Squire A. Fluorescence lifetime imaging microscopy: Spatial resolution of biochemical processes in the cell. Trends Cell Biol. 9 (1999) 48-52
36. Gadella T.W.J., Jovin T.M., and Clegg R.M. Fluorescence lifetime imaging microscopy (FLIM): Spacial resolution of microstructures on the nanosecond time scale. Biophys. Chem. 48 (1993) 221-239
37. van Kuppeveld F.J., Melchers W.J., Willems P.H., and Gadella Jr. T.W. Homomultimerization of the coxsackievirus 2B protein in living cells visualized by fluorescence resonance energy transfer microscopy. J. Virol. 76 (2002) 9446-9456
38. Wang X.F., Periasamy A., and Herman B. Fluorescence lifetime imaging microscopy (FLIM): Instrumentation and applications. Crit. Rev. Anal. Chem. 23 (1992) 369-395
39. Wlodarczyk J., Woehler A., Kobe F., Ponimaskin E., Zeug A., and Neher E. Analysis of FRET signals in the presence of free donors and acceptors. Biophys. J. 94 (2008) 986-1000
40. Koushik S.V., Chen H., Thaler C., Puhl III H.L., and Vogel S.S. Cerulean, Venus, and VenusY67C FRET reference standards. Biophys. J. 91 (2006) L99-L101
41. Rizzo M.A., Springer G., Segawa K., Zipfel W.R., and Piston D.W. Optimization of pairings and detection conditions for measurment of FRET between cyan and yellow fluorescent proteins. Microsc. Microanal. 12 (2006) 238-254
42. Chen H., Puhl III H.L., Koushik S.V., Vogel S.S., and Ikeda S.R. Measurement of FRET efficiency and ratio of donor to acceptor concentration in living cells. Biophys. J. 91 (2006) L39-41
43. Gadella Jr. T.W., and Jovin T.M. Oligomerization of epidermal growth factor receptors on A431 cells studied by time-resolved fluorescence imaging microscopy. A stereochemical model for tyrosine kinase receptor activation. J. Cell Biol. 129 (1995) 1543-1558
44. Wallrabe H., and Periasamy A. Imaging protein molecules using FRET and FLIM microscopy. Curr. Opin. Biotechnol. 16 (2005) 19-27
45. Zal T., and Gascoigne N.R. Photobleaching-corrected FRET efficiency imaging of live cells. Biophys. J. 86 (2004) 3923-3939
46. Becker W. Advanced Time-Correlated Single Photon Counting Techniques (2005), Springer, Berlin
47. Cho E.H., and Lockett S.J. Calibration and standardization of the emission light path of confocal microscopes. J. Microsc. 223 (2006) 15-25
48. Pelet S., Previte M.J., and So P.T. Comparing the quantification of Forster resonance energy transfer measurement accuracies based on intensity, spectral, and lifetime imaging. J. Biomed. Opt. 11 (2006) 34017
49. Muller B.K., Zaychikov E., Brauchle C., and Lamb D.C. Pulsed interleaved excitation. Biophys. J. 89 (2005) 3508-3522