Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II

Journal of Cell Science

Volumn 110, Issue 15, 1997, Pages 1781-1791

  Grande, Marjolein A ^a   Van Der Kraan, Ineke ^a   De Jong, Luitzen ^a   Van Driel, Roel ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

BRG1; Confocal microscopy; E2F 1; Nuclear organization; Octl; RNA polymerase II; TFIIF; TFIIH; Transcription

Indexed keywords

GLUCOCORTICOID RECEPTOR; RNA; RNA POLYMERASE II; TRANSCRIPTION FACTOR;

ARTICLE; CELL CULTURE; CELL NUCLEUS; CONTROLLED STUDY; GENETIC TRANSCRIPTION; HELA CELL; HUMAN; HUMAN CELL; IMMUNOFLUORESCENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN LOCALIZATION; RNA SYNTHESIS; TRANSCRIPTION INITIATION; TRANSCRIPTION TERMINATION;

CARRIER PROTEINS; CELL CYCLE PROTEINS; CELL NUCLEUS; DNA HELICASES; DNA-BINDING PROTEINS; DROSOPHILA PROTEINS; E2F TRANSCRIPTION FACTORS; E2F1 TRANSCRIPTION FACTOR; FLUORESCENT ANTIBODY TECHNIQUE; HELA CELLS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMMUNOBLOTTING; MEMBRANE PROTEINS; MICROSCOPY, CONFOCAL; NUCLEAR PROTEINS; ORGANIC CATION TRANSPORTER 1; RECEPTORS, GLUCOCORTICOID; RNA; RNA POLYMERASE II; S PHASE; TRANS-ACTIVATORS; TRANSCRIPTION FACTOR DP1; TRANSCRIPTION FACTOR TFIIH; TRANSCRIPTION FACTORS; TRANSCRIPTION FACTORS, TFII; TRANSCRIPTION, GENETIC;

EID: 0343683416     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (57)

1. Bentley, D. L. (1995). Regulation of transcription elongation by RNA polymerase II. Curr. Opin. Genet. Der. 5, 210-216.
2. Bohmann, K., Ferreira, J., Santama, N., Weis, K. and Lamond, A. I. (1995a). Molecular analysis of the coiled body. J. Cell Sci. Suppl. 19, 107-113.
3. Bohmann, K., Ferreira, J. A. and Lamond, A. I. (1995b). Mutational analysis of p80 coilin indicates a functional interaction between coiled bodies and the nucleolus. J. Cell Biol. 131, 817-831.
4. Bregman, D. B., Du, L., Van der Zee, S. and Warren, S. L. (1995). Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains. J. Cell Biol. 129, 287-298.
5. Cadena, D. C. and Dahmus, M. E. (1987). Messenger RNA synthesis in mammalian cells is catalyzed by the phosphorylated form of RNA polymerase II. J. Biol. Chem. 262, 12468-12474.
6. Cao, L., Faha, B., Dembski, M., Tsai, L. H., Harlow, E. and Dyson, N. (1992). Independent binding of the retinoblastoma protein and p107 to the transcription factor E2F. Nature 355, 176-179.
7. Cidlowski, J. A., Bellingham, D. L., Powell-Oliver, F. E., Lubahn, D. B. and Sar, M. (1990). Novel antipeptidc antibodies to the human glucocorticoid receptor: recognition of multiple receptor forms in vitro and distinct localization of cytoplasmic and nuclear receptors. Mol. Endocrinol. 4, 1427-1437.
8. Cobrinik, D., Whyte, P., Peeper, D. S., Jacks, T. and Weinberg, R. A. (1993). Cell cycle-specific association of E2F with the p130 E1A-binding protein. Genes Dev. 7, 2392-2404.
9. Compton, D. A., Szilak, I. and Cleveland, D. W. (1992). Primary structure of NuMA, an intranuclear protein that defines a novel pathway for segregation of proteins at mitosis. J. Cell Biol. 116, 1395-1408.
10. Dahmus, M. E. (1981). Phosphorylation of eukaryotic DNA-dependent RNA polymerase. J. Biol. Chem. 256, 3332-3339.
11. Dyson, N., Dembski, M., Fattaey, A., Ngwu, C., Ewen, M. and Helin, K. (1993). Analysis of p107-associated proteins: p107 associates with a form of E2F that differs from pRB-associated E2F-1. J. Virol. 67, 7641-7647.
12. Fletcher, C., Heintz, N. and Roeder, R. G. (1987). Purification and characterization of OTF-1, a transcription factor regulating cell cycle expression of a human histone H2b gene. Cell 51, 773-781.
13. Ghetti, A., Pinol-Roma, S., Michael, W. M., Morandi, C. and Dreyfuss, G. (1992). hnRNP-1, the polypyrimidine tract-binding protein - distinct nuclear localization and association with hnRNAs. Nucl. Acids Res. 20, 3671-3678.
14. Gonzalez, R. C. and Wintz, P. (1987). Digital Image Processing, 2nd edn, Cambridge, Massachusetts, USA: Addison-Wesley Publication Company.
15. Heintz, N. (1991). The regulation of histone gene expression during the cell cycle. Biochim. Biophys. Acta 188, 327-329.
16. Helin, K., Harlow, E. and Fattaey, A. (1993). Inhibition of E2F-1 transactivation by direct binding of the retinoblastoma protein. Mol. Cell. Biol. 13, 6501-6508.
17. Hiebert, S. W., Chellapan, S. P., Horowitz, J. M. and Nevins, J. R. (1992). The Interaction of RB with E2F coincides with an inhibition of the transcriptional activity of E2F. Genes Dev. 6, 177-185.
18. Hirschhorn, J. N., Brown, S. A., Clark, C. D. and Winston, F. (1992). Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. Genes Dev. 6, 2288-2298.
19. Huang, S. and Spector, D. L. (1996a). Intron-dependent recruitment of pre-mRNA splicing factors to sites of transcription. J. Cell Biol. 133, 719-732.
20. Huang, S. and Spector, D. L. (1996b). Dynamic organization of pre-mRNA splicing factors. J. Cell. Biochem. 62, 191-197.
21. Jackson, D. A., Hassan, A. B., Errington, R. J. and Cook, P. R. (1993). Visualization of focal sites of transcription within human nuclei. EMBO J. 12, 1059-1065.
22. Jones, K. A. and Peterlin, B. M. (1994). Control of RNA initiation and elongation at the HIV-1 promoter. Annu. Rev. Biochem. 63, 717-743.
23. Khavari, P. A., Peterson, C. L., Tamkun, J. W., Mendel, D. B. and Crabtree, G. R. (1993). BRG1 contains a conserved domain of the SW12/SNF2 family necessary for normal mitotic growth and transcription. Nature 366, 170-174.
24. Kruger, W. and Herskowitz, I. (1991). A negative regulator of HO-transcription. SIN1 (SPT2), is a nonspecific DNA-binding protein related to HMG1. Mol. Cell. Biol. 11, 4135-4146.
25. Kruger, W., Peterson, C. L., Sil, A., Coburn, C., Arents, G., Moudrianakis, E. N. and Herskowitz, I. (1995). Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription. Genes Dev. 9, 2770-2779.
26. Krumm, A. and Groudine, M. (1995). Tumor suppression and transcription elongation: The dire consequences of changing partners. Science 269, 1400-1401.
27. Kwon, H., Imbalzano, A. N., Khavari, P. A., Kingston, R. E. and Green, M. R. (1994). Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370, 477-481.
28. Lamond, A. I. and Carmo-Fonseca, M. (1993). The coiled body. Trends Cell Biol. 3, 198-204.
29. Lathangue, N. B. (1994). Drtf1/E2F - An expanding family of heterodimeric transcription factors implicated in cell-cycle control. Trends Biochem. Sci. 19, 108-114.
30. Laybourn, P. J. and Dahmus, M. E. (1990). Phosphorylation of RNA polymerase IIA occurs subsequent to interaction with the promoter and before the initiation of transcription. J. Biol. Chem. 265, 13165-13173.
31. Lehmann, A. R. (1995). Nucleotide excision repair and the link with transcription. Trends Biochem. Sci. 20, 402-405.
32. Maldonado, E., Shiekhattar, R., Sheldon, M., Cho, H., Drapkin, R., Rickert, P., Lees, E., Anderson, C. W., Linn, S. and Reinberg, D. (1996). A human RNA polymerase II complex associated with SRB and DNA-repair proteins. Nature 381, 86-89.
33. Manders, E. M. M., Stap, J., Brakenhoff, G. J., Van Driel, R. and Aten, J. A. (1992). Dynamics of three-dimensional replication patterns during the S-phase, analysed by double labelling of DNA and confocal microscopy. J. Cell Sci. 103, 857-862.
34. Muchardt, C. and Yaniv, M. (1993). A human homologue of saccharomyces-cerevisiae SNF2/SWI2 and drosophila-brm genes potentiates transcriptional activation by the glucocorticoid receptor. EMBO J. 12, 4279-4290.
35. Muller, R. (1995). Transcriptional regulation during the mammalian cell cycle. Trends Genet. 11, 173-178.
36. Murphy, S., Pierani, A., Scheidereit, C., Melli, M. and Roeder, R. G. (1989). Purified octamer binding transcription factors stimulate RNA polymerase-III-mediated transcription of the 7SK RNA gene. Cell 59, 1071-1080.
37. Payne, J. M., Laybourn, P. J. and Dahmus, M. E. (1989). The transition of RNA polymerase II from initiation to elongation is associated with phosphorylation of the carboxyl-terminal domain of subunit IIa. J. Biol. Chem. 264, 19621-19629.
38. Pinol-Roma, S., Swanson, M. S., Gall, J. G. and Dreyfuss, G. (1989). A novel heterogeneous nuclear RNP protein with a unique distribution on nascent transcripts. J. Cell Biol. 109, 2575-2587.
39. Prelich, G. and Winston, F. (1993). Mutations that suppress the deletion of an upstream activating sequence in yeast - involvement of a protein kinase and histone-H3 in repressing transcription in vivo. Genetics 135, 665-676.
40. Roberts, S. B., Segil, N. and Heintz, N. (1991). Differential phosphorylation of the transcription factor Oct1 during the cell cycle. Science 253, 1022-1026.
41. Ross, I. L., Browne, C. M. and Hume, D. A. (1994). Transcription of individual genes in eukaryotic cells occurs randomly and infrequently. Immunol. Cell Biol. 72, 177-185.
42. Schaeffer, L., Moncollin, V., Roy, R., Staub, A., Mezzina, M., Sarasin, A., Weeda, G., Hoeijmakers, J. H. and Egly, J. M. (1994). The ERCC2/DNA repair proteinis associated with the class II BTF2/TFIIH transcription factor. EMBO J. 13, 2388-2392.
43. Sive, H. L. and Roeder, R. G. (1986). Interaction of a common factor with conserved promoter and enhancer sequences in histon H2B, immunoglobin and U2 small nuclear RNA (snRNA) genes. Proc. Nat. Acad. Sci. USA 83, 6382-6386.
44. Tanaka, M., Grossniklaus, U., Herr, W. and Hernandez, W. (1988). Activation of the U2 snRNA promoter defines a new class of RNA polymerase II enhancer elements. Genes Dev. 2, 1764-1778.
45. Van Baien, R., Ten Kate, T., Koelma, D., Mosterd, B. and Smeulders, A. W. M. (1994). Scillmage: a multi-layered environment for use and development of image processing software. In Experimental Environments for Computer Vision and Image Processing (ed. H. I. C. and J. L. Crowley), pp. 107-126. Singapore: World Scientific Press.
46. Van Steensel, B., Van Binnendijk, E. P. and Van Driel, R. (1994). Confocal scanning laser microscopy of steroid receptors in brain. In Neurobiology of Steroids (ed. E. R. De Kloet and W. Sutanto), pp. 162-174. Academic Press Inc, San Diego/CA.
47. Van Steensel, B., Brink, M., Van der Meulen, K., Van Binnendijk, E. P., Wansink, D. G., De Jong, L., De Kloet, E. R. and Van Driel, R. (1995a). Localization of the glucocorticoid receptor in discrete clusters in the cell nucleus. J. Cell Sci. 108, 3003-3011.
48. Van Steensel, B., Jenster, G., Damm, K., Brinkmann, A. O. and Van Driel, R. (1995b). Domains of the human androgen receptor and glucocorticoid receptor involved in binding to the nuclear matrix. J. Cell. Biochem. 57, 465-478.
49. Van Steensel, B., Van Binnendijk, E. P., Hornsby, C. D., Van der Voort, H. T. M., Krozowski, Z. S., De Kloet, E. R. and Van Driel, R. (1996). Partial colocalization of glucocorticoid and mineralocorticoid receptors in discrete compartments in nuclei of rat hippocampus neurons. J. Cell Sci. 109, 787-792.
50. Van der Voort, H. T. M. and Strasters, K. C. (1995). Restoration of confocal images for quantitative image analysis. J. Microsc. 178, 165-181.
51. Wansink, D. G., Schul, W., Van der Kraan, I., Van Steensel, B., Van Driel, R. and De Jong, L. (1993). Fluorescent labelling of nascent RNA reveals transcription by RNA polymerase-II in domains scattered throughout the nucleus. J. Cell Biol. 122, 283-293.
52. Weeks, J. R., Hardin, S. E., Shen, J., Lee, J. M. and Greenleaf, A. L. (1993). Locus-specific variation in phosphorylation state of RNA polymerase II in vivo: correlations with gene activity and transcript processing. Genes Dev. 7, 2329-2344.
53. Weinberg, R. A. (1995). The retinoblastoma protein and cell cycle control. Cell 81, 323-330.
54. Yankulov, K., Blau, J., Purton, T., Roberts, S. and Bentley, D. L. (1994). Transcriptional elongation by RNA polymerase II is stimulated by transactivators. Cell 77, 749-759.
55. Yonaha, M., Aso, T., Kobayashi, Y., Vasavada, H., Yasukochi, Y., Weissman, S. M. and Kitajima, S. (1993). Domain structure of a human general transcription initiation factor, TFIIF. Nucl. Acids Res. 21, 273-279.
56. Zhang, J. and Corden, J. L. (1991). Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase-II largest subunit. J. Biol. Chem. 266, 2290-2296.
57. Zwilling, S., Annweiler, A. and Wirth, T. (1994). The POU domains of the Oct1 and Oct2 transcription factors mediate specific interaction with TBP. Nucl. Acids Res. 2, 1655-1662.