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Volumn 456, Issue 7218, 2008, Pages 107-111

Molecular basis of xeroderma pigmentosum group C DNA recognition by engineered meganucleases

Author keywords

[No Author keywords available]

Indexed keywords

AMEL3 PROTEIN; AMEL4 PROTEIN; DNA; ENDONUCLEASE; ENDONUCLEASE I CREI; INI3 PROTEIN; INI4 PROTEIN; PROTEIN; UNCLASSIFIED DRUG; XERODERMA PIGMENTOSUM GROUP C PROTEIN;

EID: 55549138062     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature07343     Document Type: Article
Times cited : (143)

References (33)
  • 1
    • 21744452376 scopus 로고    scopus 로고
    • Cancer in xeroderma pigmentosum and related disorders of DNA repair
    • Cleaver, J. E. Cancer in xeroderma pigmentosum and related disorders of DNA repair. Nature Rev. Cancer 5, 564-573 (2005).
    • (2005) Nature Rev. Cancer , vol.5 , pp. 564-573
    • Cleaver, J.E.1
  • 3
    • 0038523969 scopus 로고    scopus 로고
    • Chimeric nucleases stimulate gene targeting in human cells
    • Porteus, M. H. & Baltimore, D. Chimeric nucleases stimulate gene targeting in human cells. Science 300, 763 (2003).
    • (2003) Science , vol.300 , pp. 763
    • Porteus, M.H.1    Baltimore, D.2
  • 4
    • 18944373328 scopus 로고    scopus 로고
    • Highly efficient endogenous human gene correction using designed zinc-finger nucleases
    • Urnov, F. D. et al. Highly efficient endogenous human gene correction using designed zinc-finger nucleases. Nature 435, 646-651 (2005).
    • (2005) Nature , vol.435 , pp. 646-651
    • Urnov, F.D.1
  • 5
    • 0037510038 scopus 로고    scopus 로고
    • Enhancing gene targeting with designed zinc finger nucleases
    • Bibikova, M., Beumer, K., Trautman, J. K. & Carroll, D. Enhancing gene targeting with designed zinc finger nucleases. Science 300, 764 (2003).
    • (2003) Science , vol.300 , pp. 764
    • Bibikova, M.1    Beumer, K.2    Trautman, J.K.3    Carroll, D.4
  • 6
    • 35948946526 scopus 로고    scopus 로고
    • Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery
    • Lombardo, A. et al. Gene editing in human stem cells using zinc finger nucleases and integrase-defective lentiviral vector delivery. Nature Biotechnol. 25, 1298-1306 (2007).
    • (2007) Nature Biotechnol , vol.25 , pp. 1298-1306
    • Lombardo, A.1
  • 7
    • 0036021389 scopus 로고    scopus 로고
    • Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases
    • Bibikova, M., Golic, M., Golic, K. G. & Carroll, D. Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases. Genetics 161, 1169-1175 (2002).
    • (2002) Genetics , vol.161 , pp. 1169-1175
    • Bibikova, M.1    Golic, M.2    Golic, K.G.3    Carroll, D.4
  • 8
    • 34447323568 scopus 로고    scopus 로고
    • Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
    • Szczepek, M. et al. Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases. Nature Biotechnol. 25, 786-793 (2007).
    • (2007) Nature Biotechnol , vol.25 , pp. 786-793
    • Szczepek, M.1
  • 9
    • 34447319080 scopus 로고    scopus 로고
    • An improved zinc-finger nuclease architecture for highly specific genome editing
    • Miller, J. C. et al. An improved zinc-finger nuclease architecture for highly specific genome editing. Nature Biotechnol. 25, 778-785 (2007).
    • (2007) Nature Biotechnol , vol.25 , pp. 778-785
    • Miller, J.C.1
  • 10
    • 0022399493 scopus 로고
    • An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene
    • Jacquier, A. & Dujon, B. An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene. Cell 41, 383-394 (1985).
    • (1985) Cell , vol.41 , pp. 383-394
    • Jacquier, A.1    Dujon, B.2
  • 11
    • 0035883706 scopus 로고    scopus 로고
    • Homing endonucleases: Structural and functional insight into the catalysts of intron/intein mobility
    • Chevalier, B. S. & Stoddard, B. L. Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility. Nucleic Acids Res. 29, 3757-3774 (2001).
    • (2001) Nucleic Acids Res , vol.29 , pp. 3757-3774
    • Chevalier, B.S.1    Stoddard, B.L.2
  • 12
    • 0030930308 scopus 로고    scopus 로고
    • Purification, biochemical characterization and protein-DNA interactions of the I-CreI endonuclease produced in Escherichia coli
    • Wang, J., Kim, H. H., Yuan, X. & Herrin, D. L. Purification, biochemical characterization and protein-DNA interactions of the I-CreI endonuclease produced in Escherichia coli. Nucleic Acids Res. 25, 3767-3776 (1997).
    • (1997) Nucleic Acids Res , vol.25 , pp. 3767-3776
    • Wang, J.1    Kim, H.H.2    Yuan, X.3    Herrin, D.L.4
  • 13
    • 0032185110 scopus 로고    scopus 로고
    • DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI
    • Jurica, M. S., Monnat, R. J. Jr & Stoddard, B. L. DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI. Mol. Cell 2, 469-476 (1998).
    • (1998) Mol. Cell , vol.2 , pp. 469-476
    • Jurica, M.S.1    Monnat Jr, R.J.2    Stoddard, B.L.3
  • 14
    • 28944449341 scopus 로고    scopus 로고
    • Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets
    • Arnould, S. et al. Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets. J. Mol. Biol. 355, 443-458 (2006).
    • (2006) J. Mol. Biol , vol.355 , pp. 443-458
    • Arnould, S.1
  • 15
    • 33845914020 scopus 로고    scopus 로고
    • A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences
    • Smith, J. et al. A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences. Nucleic Acids Res. 34, e149 (2006).
    • (2006) Nucleic Acids Res , vol.34
    • Smith, J.1
  • 16
    • 34447109864 scopus 로고    scopus 로고
    • Engineered I-CreI derivatives cleaving sequences from the human XPC gene can induce highly efficient gene correction in mammalian cells
    • Arnould, S. et al. Engineered I-CreI derivatives cleaving sequences from the human XPC gene can induce highly efficient gene correction in mammalian cells. J. Mol. Biol. 371, 49-65 (2007).
    • (2007) J. Mol. Biol , vol.371 , pp. 49-65
    • Arnould, S.1
  • 17
    • 3042574822 scopus 로고    scopus 로고
    • Analysis of the LAGLIDADG interface of the monomeric homing endonuclease I-DmoI
    • Silva, G. H. & Belfort, M. Analysis of the LAGLIDADG interface of the monomeric homing endonuclease I-DmoI. Nucleic Acids Res. 32, 3156-3168 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. 3156-3168
    • Silva, G.H.1    Belfort, M.2
  • 18
    • 23144436398 scopus 로고    scopus 로고
    • The FoldX web server: An online force field
    • Schymkowitz, J. et al. The FoldX web server: an online force field. Nucleic Acids Res. 33, W382-W388 (2005).
    • (2005) Nucleic Acids Res , vol.33
    • Schymkowitz, J.1
  • 19
    • 34447574977 scopus 로고    scopus 로고
    • Positional stability of single double-strand breaks in mammalian cells
    • Soutoglou, E. et al. Positional stability of single double-strand breaks in mammalian cells. Nature Cell Biol. 9, 675-682 (2007).
    • (2007) Nature Cell Biol , vol.9 , pp. 675-682
    • Soutoglou, E.1
  • 20
    • 34247497770 scopus 로고    scopus 로고
    • XRCC4 in G1 suppresses homologous recombination in S/G2, in G1 checkpoint-defective cells
    • Saintigny, Y., Delacote, F., Boucher, D., Averbeck, D. & Lopez, B. S. XRCC4 in G1 suppresses homologous recombination in S/G2, in G1 checkpoint-defective cells. Oncogene 26, 2769-2780 (2007).
    • (2007) Oncogene , vol.26 , pp. 2769-2780
    • Saintigny, Y.1    Delacote, F.2    Boucher, D.3    Averbeck, D.4    Lopez, B.S.5
  • 21
    • 0037459253 scopus 로고    scopus 로고
    • Engineering of restriction endonucleases: Using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity
    • Rimseliene, R., Maneliene, Z., Lubys, A. & Janulaitis, A. Engineering of restriction endonucleases: using methylation activity of the bifunctional endonuclease Eco57I to select the mutant with a novel sequence specificity. J. Mol. Biol. 327, 383-391 (2003).
    • (2003) J. Mol. Biol , vol.327 , pp. 383-391
    • Rimseliene, R.1    Maneliene, Z.2    Lubys, A.3    Janulaitis, A.4
  • 22
    • 0036304570 scopus 로고    scopus 로고
    • Directed evolution of restriction endonuclease BstYI to achieve increased substrate specificity
    • Samuelson, J. C. & Xu, S. Y. Directed evolution of restriction endonuclease BstYI to achieve increased substrate specificity. J. Mol. Biol. 319, 673-683 (2002).
    • (2002) J. Mol. Biol , vol.319 , pp. 673-683
    • Samuelson, J.C.1    Xu, S.Y.2
  • 23
    • 0034754491 scopus 로고    scopus 로고
    • Alteration of Cre recombinase site specificity by substrate-linked protein evolution
    • Buchholz, F. & Stewart, A. F. Alteration of Cre recombinase site specificity by substrate-linked protein evolution. Nature Biotechnol. 19, 1047-1052 (2001).
    • (2001) Nature Biotechnol , vol.19 , pp. 1047-1052
    • Buchholz, F.1    Stewart, A.F.2
  • 24
    • 0037007010 scopus 로고    scopus 로고
    • Directed evolution of the site specificity of Cre recombinase
    • Santoro, S. W. & Schultz, P. G. Directed evolution of the site specificity of Cre recombinase. Proc. Natl Acad. Sci. USA 99, 4185-4190 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 4185-4190
    • Santoro, S.W.1    Schultz, P.G.2
  • 25
    • 0037423742 scopus 로고    scopus 로고
    • Stepwise manipulation of DNA specificity in Flp recombinase: Progressively adapting Flp to individual and combinatorial mutations in its target site
    • Voziyanov, Y., Konieczka, J. H., Stewart, A. F.&Jayaram, M. Stepwise manipulation of DNA specificity in Flp recombinase: progressively adapting Flp to individual and combinatorial mutations in its target site. J. Mol. Biol. 326, 65-76 (2003).
    • (2003) J. Mol. Biol , vol.326 , pp. 65-76
    • Voziyanov, Y.1    Konieczka, J.H.2    Stewart, A.F.3    Jayaram, M.4
  • 26
  • 27
    • 33745278855 scopus 로고    scopus 로고
    • Computational redesign of endonuclease DNA binding and cleavage specificity
    • Ashworth, J. et al. Computational redesign of endonuclease DNA binding and cleavage specificity. Nature 441, 656-659 (2006).
    • (2006) Nature , vol.441 , pp. 656-659
    • Ashworth, J.1
  • 28
    • 0034933830 scopus 로고    scopus 로고
    • Clues to epidermal cancer proneness revealed by reconstruction of DNA repair-deficient xeroderma pigmentosum skin in vitro
    • Bernerd, F. et al. Clues to epidermal cancer proneness revealed by reconstruction of DNA repair-deficient xeroderma pigmentosum skin in vitro. Proc. Natl Acad. Sci. USA 98, 7817-7822 (2001).
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 7817-7822
    • Bernerd, F.1
  • 29
    • 34250828453 scopus 로고    scopus 로고
    • The C-terminal loop of the homing endonuclease I-CreI is essential for site recognition, DNA binding and cleavage
    • Prieto, J. et al. The C-terminal loop of the homing endonuclease I-CreI is essential for site recognition, DNA binding and cleavage. Nucleic Acids Res. 35, 3262-3271 (2007).
    • (2007) Nucleic Acids Res , vol.35 , pp. 3262-3271
    • Prieto, J.1
  • 30
    • 0032010153 scopus 로고    scopus 로고
    • A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra
    • Zhang, Z. & Marshall, A. G. A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra. J. Am. Soc. Mass Spectrom. 9, 225-233 (1998).
    • (1998) J. Am. Soc. Mass Spectrom , vol.9 , pp. 225-233
    • Zhang, Z.1    Marshall, A.G.2
  • 31
    • 34548232365 scopus 로고    scopus 로고
    • Inference of macromolecular assemblies from crystalline state
    • Krissinel, E. & Henrick, K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774-797 (2007).
    • (2007) J. Mol. Biol , vol.372 , pp. 774-797
    • Krissinel, E.1    Henrick, K.2
  • 32
    • 0031574026 scopus 로고    scopus 로고
    • NUCPLOT: A program to generate schematic diagrams of protein-nucleic acid interactions
    • Luscombe, N. M., Laskowski, R. A. & Thornton, J. M. NUCPLOT: a program to generate schematic diagrams of protein-nucleic acid interactions. Nucleic Acids Res. 25, 4940-4945 (1997).
    • (1997) Nucleic Acids Res , vol.25 , pp. 4940-4945
    • Luscombe, N.M.1    Laskowski, R.A.2    Thornton, J.M.3
  • 33
    • 0036682122 scopus 로고    scopus 로고
    • An xrcc4 defect or Wortmannin stimulates homologous recombination specifically induced by double-strand breaks in mammalian cells
    • Delacote, F., Han, M., Stamato, T. D., Jasin, M. & Lopez, B. S. An xrcc4 defect or Wortmannin stimulates homologous recombination specifically induced by double-strand breaks in mammalian cells. Nucleic Acids Res. 30, 3454-3463 (2002).
    • (2002) Nucleic Acids Res , vol.30 , pp. 3454-3463
    • Delacote, F.1    Han, M.2    Stamato, T.D.3    Jasin, M.4    Lopez, B.S.5


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