-
1
-
-
18744366334
-
Hox regulation of normal and leukemic hematopoietic stem cells
-
Abramovich C, Humphries RK. 2005. Hox regulation of normal and leukemic hematopoietic stem cells. Curr Opin Hematol 12:210-216.
-
(2005)
Curr Opin Hematol
, vol.12
, pp. 210-216
-
-
Abramovich, C.1
Humphries, R.K.2
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0001383018
-
Construction of PI artificial chromosome (PAC) libraries from lower vertebrates
-
Lai E, Birren B, editors, San Diego: Academic Press. p
-
Amemiya CT, Ota T, Litman GW. 1996. Construction of PI artificial chromosome (PAC) libraries from lower vertebrates. In: Lai E, Birren B, editors, Analysis of nonmamma-lian genomes. San Diego: Academic Press. p 223-256.
-
(1996)
Analysis of nonmamma-lian genomes
, pp. 223-256
-
-
Amemiya, C.T.1
Ota, T.2
Litman, G.W.3
-
4
-
-
0030854106
-
Phylogenetic reconstruction of vertebrate Hox cluster duplications
-
Bailey WJ, Kim J, Wagner G, Ruddle FH. 1997. Phylogenetic reconstruction of vertebrate Hox cluster duplications. Mol Biol Evol 14:843-853.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 843-853
-
-
Bailey, W.J.1
Kim, J.2
Wagner, G.3
Ruddle, F.H.4
-
5
-
-
23144452801
-
GeneMark: Web software for gene finding in prokaryotes, eukaryotes and viruses
-
Besemer J, Borodovsky M. 2005. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 33:W451-W454.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Besemer, J.1
Borodovsky, M.2
-
7
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge CB, Karlin S. 1997. Prediction of complete gene structures in human genomic DNA. J Mol Biol 268:78-94.
-
(1997)
J Mol Biol
, vol.268
, pp. 78-94
-
-
Burge, C.B.1
Karlin, S.2
-
9
-
-
33644641766
-
Unusual gene order and organization of the sea urchin Hox cluster
-
Cameron RA, Rowen L, Nesbitt R, Bloom S, Rast JP, Berney K, Arenas-Mena C, Martinez P, Lucas S, Richardson PM, Davidson EH, Peterson KJ, Hood L. 2006. Unusual gene order and organization of the sea urchin Hox cluster. J Exp Zoolog B Mol Dev Evol 306:45-58.
-
(2006)
J Exp Zoolog B Mol Dev E
, vol.306
, pp. 45-58
-
-
Cameron, R.A.1
Rowen, L.2
Nesbitt, R.3
Bloom, S.4
Rast, J.P.5
Berney, K.6
Arenas-Mena, C.7
Martinez, P.8
Lucas, S.9
Richardson, P.M.10
Davidson, E.H.11
Peterson, K.J.12
Hood, L.13
-
10
-
-
4544252051
-
Gene phylogenies and protein-protein interactions: Possible artifacts resulting from shared protein interaction partners
-
Campos PRA, de Olivera VM, Wagner GP, Stadler PF. 2004. Gene phylogenies and protein-protein interactions: possible artifacts resulting from shared protein interaction partners. J Theor Biol 231:197-202.
-
(2004)
J Theor Biol
, vol.231
, pp. 197-202
-
-
Campos, P.R.A.1
de Olivera, V.M.2
Wagner, G.P.3
Stadler, P.F.4
-
12
-
-
0037117587
-
Molecular evolution of the HoxA cluster in the three major gnathostome lineages
-
Chiu Ch, Amemiya C, Dewar K, Kim CB, Ruddle FH, Wagner GP. 2002. Molecular evolution of the HoxA cluster in the three major gnathostome lineages. Proc Natl Acad Sci USA 99:5492-5497.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5492-5497
-
-
Chiu, C.1
Amemiya, C.2
Dewar, K.3
Kim, C.B.4
Ruddle, F.H.5
Wagner, G.P.6
-
13
-
-
9144273767
-
Bichir HoxA cluster sequence reveals surprising trends in rayfinned fish genomic evolution
-
Chiu CH, Dewar K, Wagner GP, Takahashi K, Ruddle F, Ledje C, Bartsch P, Scemama JL, Stellwag E, Fried C, Prohaska SJ, Stadler PF, Amemiya CT. 2004. Bichir HoxA cluster sequence reveals surprising trends in rayfinned fish genomic evolution. Genome Res 14:11-17.
-
(2004)
Genome Res
, vol.14
, pp. 11-17
-
-
Chiu, C.H.1
Dewar, K.2
Wagner, G.P.3
Takahashi, K.4
Ruddle, F.5
Ledje, C.6
Bartsch, P.7
Scemama, J.L.8
Stellwag, E.9
Fried, C.10
Prohaska, S.J.11
Stadler, P.F.12
Amemiya, C.T.13
-
14
-
-
0033600273
-
Hox genes in brachiopods and priapulids and protostome evolution
-
de Rosa R, Grenier JK, Andreeva T, Cook CE, Adoutte A, Akam M, Carroll SB, Balavoine G. 1999. Hox genes in brachiopods and priapulids and protostome evolution. Nature 399:772-776.
-
(1999)
Nature
, vol.399
, pp. 772-776
-
-
de Rosa, R.1
Grenier, J.K.2
Andreeva, T.3
Cook, C.E.4
Adoutte, A.5
Akam, M.6
Carroll, S.B.7
Balavoine, G.8
-
15
-
-
33644536713
-
Tunicates and not cephalochordates are the closest living relatives of vertebrates
-
Delsuc F, Brinkmann H, Chourrout D, Philippe H. 2006. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439:923-924.
-
(2006)
Nature
, vol.439
, pp. 923-924
-
-
Delsuc, F.1
Brinkmann, H.2
Chourrout, D.3
Philippe, H.4
-
16
-
-
34547819351
-
The rise and fall of Hox gene clusters
-
Duboule D. 2007. The rise and fall of Hox gene clusters. Development 134:2549-2560.
-
(2007)
Development
, vol.134
, pp. 2549-2560
-
-
Duboule, D.1
-
17
-
-
2942596458
-
Colinearity loops out
-
Duboule D, Deschamps J. 2004. Colinearity loops out. Dev Cell 6:738-740.
-
(2004)
Dev Cell
, vol.6
, pp. 738-740
-
-
Duboule, D.1
Deschamps, J.2
-
18
-
-
33646786144
-
The role of HOX genes in myeloid leukemogenesis
-
Eklund EA. 2006. The role of HOX genes in myeloid leukemogenesis. Curr Opin Hematol 13:67-73.
-
(2006)
Curr Opin Hematol
, vol.13
, pp. 67-73
-
-
Eklund, E.A.1
-
19
-
-
1842432616
-
Hox genes: Did the vertebrate ancestor have a Hoxl4?
-
Ferrier DEK. 2004. Hox genes: did the vertebrate ancestor have a Hoxl4? Curr Biol 14:R210-R211.
-
(2004)
Curr Biol
, vol.14
-
-
Ferrier, D.E.K.1
-
21
-
-
0028897837
-
Evolutionary-conserved enhancers direct region-specific expression of the murine Hoxa-1 and Hoxa-2 loci in both mice and Drosophila
-
Frasch M, Chen X, Lufkin T. 1995. Evolutionary-conserved enhancers direct region-specific expression of the murine Hoxa-1 and Hoxa-2 loci in both mice and Drosophila. Development 121:957-974.
-
(1995)
Development
, vol.121
, pp. 957-974
-
-
Frasch, M.1
Chen, X.2
Lufkin, T.3
-
22
-
-
1842852702
-
Exclusion of repetitive DNA elements from gnathostome Hox clusters
-
Fried C, Prohaska SJ, Stadler PF. 2004. Exclusion of repetitive DNA elements from gnathostome Hox clusters. J Exp Zoolog Mol Dev Evol 302B:165-173.
-
(2004)
J Exp Zoolog Mol Dev Evol
, vol.302 B
, pp. 165-173
-
-
Fried, C.1
Prohaska, S.J.2
Stadler, P.F.3
-
23
-
-
48649106830
-
A PCR survey of Xenoturbella bocki Hox genes
-
Fritzsch G, Böhme MU, Thorndyke M, Nakano H, Israelsson O, Stach T, Schlegel M, Hankeln T, Stadler Peter F. 2007. A PCR survey of Xenoturbella bocki Hox genes. J Exp Zool Mol Dev Evol, 306B:45-58.
-
(2007)
J Exp Zool Mol Dev Evol
, vol.306 B
, pp. 45-58
-
-
Fritzsch, G.1
Böhme, M.U.2
Thorndyke, M.3
Nakano, H.4
Israelsson, O.5
Stach, T.6
Schlegel, M.7
Hankeln, T.8
Stadler Peter, F.9
-
24
-
-
0028065237
-
Archetypal organization of the amphioxus hox gene cluster
-
Garcia-Ferǹandez J, Holland PW. 1994. Archetypal organization of the amphioxus hox gene cluster. Nature 370:563-566.
-
(1994)
Nature
, vol.370
, pp. 563-566
-
-
Garcia-Ferǹandez, J.1
Holland, P.W.2
-
25
-
-
0030320547
-
Amphioxus Hox genes: Insights into evolution and development
-
Garcia-Ferǹandez J, Holland PW. 1996. Amphioxus Hox genes: insights into evolution and development. Int J Dev Biol Suppl 1:71S-72S.
-
(1996)
Int J Dev Biol
, Issue.SUPPL. 1
-
-
Garcia-Ferǹandez, J.1
Holland, P.W.2
-
26
-
-
0032005387
-
Shaping animal body plans in development and evolution by modulation of Hox expression patterns
-
Gellon G, McGinnis W. 1998. Shaping animal body plans in development and evolution by modulation of Hox expression patterns. Bioessays 20:116-125.
-
(1998)
Bioessays
, vol.20
, pp. 116-125
-
-
Gellon, G.1
McGinnis, W.2
-
27
-
-
0031003129
-
Positive cross-regulation and enhancer sharing: Two mechanisms for specifying overlapping Hox expression patterns
-
Gould A, Morrison A, Sproat G, White RA, Krumlauf R. 1997. Positive cross-regulation and enhancer sharing: two mechanisms for specifying overlapping Hox expression patterns. Genes Dev 11:900-913.
-
(1997)
Genes Dev
, vol.11
, pp. 900-913
-
-
Gould, A.1
Morrison, A.2
Sproat, G.3
White, R.A.4
Krumlauf, R.5
-
28
-
-
33750847512
-
Expression patterns of hox genes in larvae of the sea lily Metacrinus rotundus
-
Hara Y, Yamaguchi M, Akasaka K, Nakano H, Nonaka M, Amemiya S. 2006. Expression patterns of hox genes in larvae of the sea lily Metacrinus rotundus. Dev Genes Evol 216:797-809.
-
(2006)
Dev Genes Evol
, vol.216
, pp. 797-809
-
-
Hara, Y.1
Yamaguchi, M.2
Akasaka, K.3
Nakano, H.4
Nonaka, M.5
Amemiya, S.6
-
29
-
-
33644772270
-
-
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF, The Students of Bioinformatics Computer Labs 2004 and 2005. 2006. The expansion of the metazoan microRNA repertoire. BMC Genomics 7:15 [epub].
-
Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF, The Students of Bioinformatics Computer Labs 2004 and 2005. 2006. The expansion of the metazoan microRNA repertoire. BMC Genomics 7:15 [epub].
-
-
-
-
30
-
-
36248967647
-
Comparative phylogenomic analyses of teleost fish Hox gene clusters: Lessons from the cichlid fish Astatotilapia burtoni
-
Hoegg S, Boore JL, Kuehl JV, Meyer A. 2007. Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni. BMC Genomics 8:317.
-
(2007)
BMC Genomics
, vol.8
, pp. 317
-
-
Hoegg, S.1
Boore, J.L.2
Kuehl, J.V.3
Meyer, A.4
-
32
-
-
46449117597
-
-
Holland LZ, Albalat R, Azumi K, Benito-Gutíerez È, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DEK, Garcia-Ferǹandez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman G, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida Y, Yoshizaki F, Yu J-K, Zhang Q, Zmasek CM, Putnam NH, Rokhsar DS, Satoh N, Holland PWH. 2008. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res, in press
-
Holland LZ, Albalat R, Azumi K, Benito-Gutíerez È, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DEK, Garcia-Ferǹandez J, Gibson-Brown JJ, Gissi C, Godzik A, Hallböök F, Hirose D, Hosomichi K, Ikuta T, Inoko H, Kasahara M, Kasamatsu J, Kawashima T, Kimura A, Kobayashi M, Kozmik Z, Kubokawa K, Laudet V, Litman G, McHardy AC, Meulemans D, Nonaka M, Olinski RP, Pancer Z, Pennacchio LA, Pestarino M, Rast JP, Rigoutsos I, Robinson-Rechavi M, Roch G, Saiga H, Sasakura Y, Satake M, Satou Y, Schubert M, Sherwood N, Shiina T, Takatori N, Tello J, Vopalensky P, Wada S, Xu A, Ye Y, Yoshida Y, Yoshizaki F, Yu J-K, Zhang Q, Zmasek CM, Putnam NH, Rokhsar DS, Satoh N, Holland PWH. 2008. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Res, in press.
-
-
-
-
33
-
-
19544383965
-
Organization of hox genes in ascidians: Present, past, and future
-
Ikuta T, Saiga H. 2005. Organization of hox genes in ascidians: present, past, and future. Dev Dyn 233:382-389.
-
(2005)
Dev Dyn
, vol.233
, pp. 382-389
-
-
Ikuta, T.1
Saiga, H.2
-
34
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
35
-
-
12944301125
-
Hox cluster genomics in the horn shark, Heterodontus francisci
-
Kim CB, Amemiya C, Bailey W, Kawasaki K, Mezey J, Miller W, Minosima S, Shimizu N, Wagner GP, Ruddle F. 2000. Hox cluster genomics in the horn shark, Heterodontus francisci. Proc Natl Acad Sci USA 97:1655-1660.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 1655-1660
-
-
Kim, C.B.1
Amemiya, C.2
Bailey, W.3
Kawasaki, K.4
Mezey, J.5
Miller, W.6
Minosima, S.7
Shimizu, N.8
Wagner, G.P.9
Ruddle, F.10
-
36
-
-
33750831582
-
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
-
Kohany O, Gentles AJ, Hankus L, Jurka J. 2006. Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7:474.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 474
-
-
Kohany, O.1
Gentles, A.J.2
Hankus, L.3
Jurka, J.4
-
37
-
-
0026845941
-
Evolution of the vertebrate Hox homeobox genes
-
Krumlauf R. 1992. Evolution of the vertebrate Hox homeobox genes. Bioessays 14:245-252.
-
(1992)
Bioessays
, vol.14
, pp. 245-252
-
-
Krumlauf, R.1
-
38
-
-
33644856151
-
Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes
-
Kurosawa G, Takamatsu N, Takahashi M, Sumitomo M, Sanaka E, Yamada K, Nishii K, Matsuda M, Asakawa S, Ishiguro H, Miura K, Kurosawa Y, Shimizu N, Kohara Y, Hori H. 2006. Organization and structure of hox gene loci in medaka genome and comparison with those of pufferfish and zebrafish genomes. Gene 370:75-82.
-
(2006)
Gene
, vol.370
, pp. 75-82
-
-
Kurosawa, G.1
Takamatsu, N.2
Takahashi, M.3
Sumitomo, M.4
Sanaka, E.5
Yamada, K.6
Nishii, K.7
Matsuda, M.8
Asakawa, S.9
Ishiguro, H.10
Miura, K.11
Kurosawa, Y.12
Shimizu, N.13
Kohara, Y.14
Hori, H.15
-
39
-
-
33646468497
-
Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters
-
Lee AP, Koh EGL, Tay A, Brenner S, Venkatesh B. 2006. Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters. Proc Natl Acad Sci USA 103:6994-6999.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6994-6999
-
-
Lee, A.P.1
Koh, E.G.L.2
Tay, A.3
Brenner, S.4
Venkatesh, B.5
-
40
-
-
0041864018
-
Cephalopod Hox genes and the origin of morphological novelties
-
Lee PN, Callaerts P, de Couet HG, Martindale MQ. 2003. Cephalopod Hox genes and the origin of morphological novelties. Nature 424:1061-1065.
-
(2003)
Nature
, vol.424
, pp. 1061-1065
-
-
Lee, P.N.1
Callaerts, P.2
de Couet, H.G.3
Martindale, M.Q.4
-
41
-
-
0033567324
-
Homeobox genes in the Australian lungfish, Neoceratodus forsteri
-
Longhurst TJ, Joss JM. 1999. Homeobox genes in the Australian lungfish, Neoceratodus forsteri. J Exp Zool 285:140-145.
-
(1999)
J Exp Zool
, vol.285
, pp. 140-145
-
-
Longhurst, T.J.1
Joss, J.M.2
-
42
-
-
16644363392
-
Adaptive evolution of hoxa-11 and hoxa-13 at the origin of the uterus in mammals
-
Lynch VJ, Roth JJ, Takahashi K, Dunn CW, Nonaka DF, Stopper GF, Wagner GP. 2004. Adaptive evolution of hoxa-11 and hoxa-13 at the origin of the uterus in mammals. Proc Biol Sci 271:2201-2207.
-
(2004)
Proc Biol Sci
, vol.271
, pp. 2201-2207
-
-
Lynch, V.J.1
Roth, J.J.2
Takahashi, K.3
Dunn, C.W.4
Nonaka, D.F.5
Stopper, G.F.6
Wagner, G.P.7
-
43
-
-
0042329183
-
A position-dependent organisation of retinoid response elements is conserved in the vertebrate Hox clusters
-
Mainguy G, In der Rieden PMJ, Berezikov E, Woltering JM, Plasterk RHA, Durston AJ. 2003. A position-dependent organisation of retinoid response elements is conserved in the vertebrate Hox clusters. Trends Genet 19: 476-479.
-
(2003)
Trends Genet
, vol.19
, pp. 476-479
-
-
Mainguy, G.1
In der Rieden, P.M.J.2
Berezikov, E.3
Woltering, J.M.4
Plasterk, R.H.A.5
Durston, A.J.6
-
45
-
-
33745965033
-
Hox genes in sea spiders (Pycnogonida) and the homology of arthropod head segments
-
Manuel M, Jager M, Murienne J, Clabaut C, Le Guyader H. 2006. Hox genes in sea spiders (Pycnogonida) and the homology of arthropod head segments. Dev Genes Evol 216:481-491.
-
(2006)
Dev Genes Evol
, vol.216
, pp. 481-491
-
-
Manuel, M.1
Jager, M.2
Murienne, J.3
Clabaut, C.4
Le Guyader, H.5
-
46
-
-
0034649652
-
Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head
-
Manzanares M, Wada H, Itasaki N, Trainor PA, Krumlauf R, Holland PW. 2000. Conservation and elaboration of Hox gene regulation during evolution of the vertebrate head. Nature 408:854-857.
-
(2000)
Nature
, vol.408
, pp. 854-857
-
-
Manzanares, M.1
Wada, H.2
Itasaki, N.3
Trainor, P.A.4
Krumlauf, R.5
Holland, P.W.6
-
48
-
-
0034518158
-
VISTA: Visualizing global DNA sequence alignments of arbitrary length
-
Mayor C, Brudno M, Schwartz JR, Poliakov A, Rubin EM, Frazer KA, Pachter LS, Dubchak I. 2000. VISTA: visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16:1046-1047.
-
(2000)
Bioinformatics
, vol.16
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
49
-
-
28844487573
-
No more than 14: The end of the amphioxus Hox cluster
-
Minguillón C, Gardenyes J, Serra E, Castro LFC, Hill-Force A, Holland PW, Amemiya CT, Garcia-Fernandez J. 2005. No more than 14: the end of the amphioxus Hox cluster. Int J Biol Sci 1:19-23.
-
(2005)
Int J Biol Sci
, vol.1
, pp. 19-23
-
-
Minguillón, C.1
Gardenyes, J.2
Serra, E.3
Castro, L.F.C.4
Hill-Force, A.5
Holland, P.W.6
Amemiya, C.T.7
Garcia-Fernandez, J.8
-
52
-
-
0034942558
-
Quartet-mapping, a generalization of the likelihood mapping procedure
-
Nieselt-Struwe K, von Haeseler A. 2001. Quartet-mapping, a generalization of the likelihood mapping procedure. Mol Biol Evol 18:1204-1219.
-
(2001)
Mol Biol Evol
, vol.18
, pp. 1204-1219
-
-
Nieselt-Struwe, K.1
von Haeseler, A.2
-
53
-
-
0032529138
-
An improved approach for construction of bacterial artificial chromosome libraries
-
Osoegawa K, Woon PY, Zhao B, Frengen E, Tateno M, Catanese JJ, de Jong PJ. 1998. An improved approach for construction of bacterial artificial chromosome libraries. Genomics 52:1-8.
-
(1998)
Genomics
, vol.52
, pp. 1-8
-
-
Osoegawa, K.1
Woon, P.Y.2
Zhao, B.3
Frengen, E.4
Tateno, M.5
Catanese, J.J.6
de Jong, P.J.7
-
55
-
-
28944438404
-
Modulating Hox gene functions during animal body patterning
-
Pearson JC, Lemons D, McGinnis W. 2005. Modulating Hox gene functions during animal body patterning. Nat Rev Genet 6:893-904.
-
(2005)
Nat Rev Genet
, vol.6
, pp. 893-904
-
-
Pearson, J.C.1
Lemons, D.2
McGinnis, W.3
-
56
-
-
2442438948
-
Isolation of Hox and Parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes
-
Peterson KJ. 2004. Isolation of Hox and Parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes. Mol Phylogenet Evol 31: 1208-1215.
-
(2004)
Mol Phylogenet Evol
, vol.31
, pp. 1208-1215
-
-
Peterson, K.J.1
-
59
-
-
1842485064
-
Evidence for a Hoxl4, paralog group in vertebrates
-
Powers TP, Amemiya CT. 2004. Evidence for a Hoxl4, paralog group in vertebrates. Curr Biol 14:R183-R184.
-
(2004)
Curr Biol
, vol.14
-
-
Powers, T.P.1
Amemiya, C.T.2
-
60
-
-
1842679836
-
Surveying phylogenetic footprints in large gene clusters: Applications to Hox cluster duplications
-
Prohaska S, Fried C, Flamm C, Wagner G, Stadler PF. 2004. Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications. Mol Phylogenet Evol 31:581-604.
-
(2004)
Mol Phylogenet Evol
, vol.31
, pp. 581-604
-
-
Prohaska, S.1
Fried, C.2
Flamm, C.3
Wagner, G.4
Stadler, P.F.5
-
61
-
-
48649111019
-
-
Prohaska SJ, Stadler PF, Wagner GP. 2006. Evolutionary genomics of Hox gene clusters. In: Papageorgiou S, editor. HOX gene expression. New York: Landes Bioscience & Springer. p 68-90.
-
Prohaska SJ, Stadler PF, Wagner GP. 2006. Evolutionary genomics of Hox gene clusters. In: Papageorgiou S, editor. HOX gene expression. New York: Landes Bioscience & Springer. p 68-90.
-
-
-
-
62
-
-
34547613188
-
Sequencing and genomic annotation of the chicken (Gallus gallus) Hox clusters, and mapping of evolutionarily conserved regions
-
Richardson MK, Crooijmans RP, Groenen MA. 2007. Sequencing and genomic annotation of the chicken (Gallus gallus) Hox clusters, and mapping of evolutionarily conserved regions. Cytogenet Genome Res 117: 110-119.
-
(2007)
Cytogenet Genome Res
, vol.117
, pp. 110-119
-
-
Richardson, M.K.1
Crooijmans, R.P.2
Groenen, M.A.3
-
63
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, Goodnough LH, Helms JA, Farnham PJ, Segal E, Chang HY. 2007. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 29:1311-1323.
-
(2007)
Cell
, vol.29
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
64
-
-
0034020416
-
PipMaker - a web server for aligning two genomic DNA sequences
-
Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W. 2000. PipMaker - a web server for aligning two genomic DNA sequences. Genome Res 4:577-586.
-
(2000)
Genome Res
, vol.4
, pp. 577-586
-
-
Schwartz, S.1
Zhang, Z.2
Frazer, K.A.3
Smit, A.4
Riemer, C.5
Bouck, J.6
Gibbs, R.7
Hardison, R.8
Miller, W.9
-
65
-
-
4544320630
-
Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica
-
Seo HC, Edrardsen RB, Maeland AD, Bjordal M, Jensen MF, Hansen A, Flaat M, Weissenbach J, Lehrach H, Wincker P, Reinhardt R, Chourrout D. 2004. Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature 431:67-71.
-
(2004)
Nature
, vol.431
, pp. 67-71
-
-
Seo, H.C.1
Edrardsen, R.B.2
Maeland, A.D.3
Bjordal, M.4
Jensen, M.F.5
Hansen, A.6
Flaat, M.7
Weissenbach, J.8
Lehrach, H.9
Wincker, P.10
Reinhardt, R.11
Chourrout, D.12
-
66
-
-
0038613098
-
A global control region defines a chromosomal regulatory landscape containing the HoxD cluster
-
Spitz F, Gonzalez F, Duboule D. 2003. A global control region defines a chromosomal regulatory landscape containing the HoxD cluster. Cell 113:405-417.
-
(2003)
Cell
, vol.113
, pp. 405-417
-
-
Spitz, F.1
Gonzalez, F.2
Duboule, D.3
-
67
-
-
1842838629
-
Evidence for independent Hox gene duplications in the hagfish lineage: A PCR-based gene inventory of Eptatretus stoutii
-
Stadler PF, Fried C, Prohaska SJ, Bailey WJ, Misof BY, Ruddle FH, Wagner GP. 2004. Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii. Mol Phylogenet Evol 32:686-692.
-
(2004)
Mol Phylogenet Evol
, vol.32
, pp. 686-692
-
-
Stadler, P.F.1
Fried, C.2
Prohaska, S.J.3
Bailey, W.J.4
Misof, B.Y.5
Ruddle, F.H.6
Wagner, G.P.7
-
68
-
-
37249025294
-
Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
-
Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M. 2007. Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Genome Res 17:1865-1879.
-
(2007)
Genome Res
, vol.17
, pp. 1865-1879
-
-
Stark, A.1
Kheradpour, P.2
Parts, L.3
Brennecke, J.4
Hodges, E.5
Hannon, G.J.6
Kellis, M.7
-
70
-
-
0029922511
-
Discovering and understanding genes in human DNA sequence using GRAIL
-
Uberbacher EC, Xu Y, Mural RJ. 1996. Discovering and understanding genes in human DNA sequence using GRAIL. Methods Enzymol 266:259-281.
-
(1996)
Methods Enzymol
, vol.266
, pp. 259-281
-
-
Uberbacher, E.C.1
Xu, Y.2
Mural, R.J.3
-
71
-
-
34247342594
-
Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome
-
Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S. 2007. Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol 5:e101.
-
(2007)
PLoS Biol
, vol.5
-
-
Venkatesh, B.1
Kirkness, E.F.2
Loh, Y.H.3
Halpern, A.L.4
Lee, A.P.5
Johnson, J.6
Dandona, N.7
Viswanathan, L.D.8
Tay, A.9
Venter, J.C.10
Strausberg, R.L.11
Brenner, S.12
-
72
-
-
33646882874
-
Conserved RARE localization in amphioxus Hox clusters and implications for Hox code evolution in the vertebrate neural crest
-
Wada H, Escriva H, Zhang S, Laudet V. 2006. Conserved RARE localization in amphioxus Hox clusters and implications for Hox code evolution in the vertebrate neural crest. Dev Dyn 235:1522-1531.
-
(2006)
Dev Dyn
, vol.235
, pp. 1522-1531
-
-
Wada, H.1
Escriva, H.2
Zhang, S.3
Laudet, V.4
-
73
-
-
33144487454
-
Molecular evolution of evolutionary novelties: The vagina and uterus of therian mammals
-
Wagner GP, Lynch VJ. 2005. Molecular evolution of evolutionary novelties: the vagina and uterus of therian mammals. J Exp Zoolog B Mol Dev Evol 304:580-592.
-
(2005)
J Exp Zoolog B Mol Dev E
, vol.304
, pp. 580-592
-
-
Wagner, G.P.1
Lynch, V.J.2
-
74
-
-
33847662814
-
Comparison of Pax1/9 locus reveals 500-myr-old syntenic block and evolutionary conserved noncoding regions
-
Wang W, Zhong J, Su B, Zhou Y, Wang YQ. 2007. Comparison of Pax1/9 locus reveals 500-myr-old syntenic block and evolutionary conserved noncoding regions. Mol Biol Evol 24:784-791.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 784-791
-
-
Wang, W.1
Zhong, J.2
Su, B.3
Zhou, Y.4
Wang, Y.Q.5
-
75
-
-
2142654329
-
MicroRNA-directed cleavage of HoxB8 mRNA
-
Yekta S, Shih Ih, Bartel DP. 2004. MicroRNA-directed cleavage of HoxB8 mRNA. Science 304:594-596.
-
(2004)
Science
, vol.304
, pp. 594-596
-
-
Yekta, S.1
Shih, I.2
Bartel, D.P.3
-
76
-
-
33846912724
-
Axial patterning in cephalochordates and the evolution of the organizer
-
Yu JK, Satou Y, Holland ND, Shin-i T, Kohara Y, Satoh N, Bronner-Fraser M, Holland L. 2007. Axial patterning in cephalochordates and the evolution of the organizer. Nature 445:613-617.
-
(2007)
Nature
, vol.445
, pp. 613-617
-
-
Yu, J.K.1
Satou, Y.2
Holland, N.D.3
Shin-i, T.4
Kohara, Y.5
Satoh, N.6
Bronner-Fraser, M.7
Holland, L.8
-
77
-
-
34547816223
-
The role of Hox genes during vertebrate limb development
-
Zakany J, Duboule D. 2007. The role of Hox genes during vertebrate limb development. Curr Opin Genet Dev 17: 359-366.
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 359-366
-
-
Zakany, J.1
Duboule, D.2
|