[16] Discovering and understanding genes in human DNA sequence using GRAIL

Methods in Enzymology

Volumn 266, Issue , 1996, Pages 259-278

  Uberbacher, Edward C ^a   Xu, Ying ^a   Mural, Richard J ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE II;

ALGORITHM; ARTICLE; COMPUTER ANALYSIS; DNA SEQUENCE; GENETIC ANALYSIS; NERVE CELL NETWORK; PRIORITY JOURNAL; PROMOTER REGION; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE; STATISTICS;

BASE SEQUENCE; DATABASES, FACTUAL; DNA; DNA, COMPLEMENTARY; GENES; GENOME, HUMAN; HUMANS; MATHEMATICS; MODELS, GENETIC; NEURAL NETWORKS (COMPUTER); PROMOTER REGIONS (GENETICS); READING FRAMES; RNA POLYMERASE II; SOFTWARE; TATA BOX;

EID: 0029922511     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0076-6879(96)66018-2     Document Type: Article

References (25)

1. E. C. Uberbacher and R. J. Mural, Proc. Natl. Acad. Sci. U.S.A. 88, 11261 (1991).
2. R. J. Mural, J. R. Einstein, X. Guan, R. C. Mann, and E. C. Uberbacher, Trends Biotechnol. 10, 66 (1992).
3. Y. Xu, R. J. Mural, M. Shah, and E. C. Uberbacher, in "Genetic Engineering: Principles and Methods" (J. Setlow, ed.), Vol. 16, p. 241. Plenum, New York, 1994.
4. E. C. Uberbacher, J. R. Einstein, X. Guan, and R. J. Mural, in "Proceedings of the Second International Conference on Bioinformatics, Supercomputing and Complex Genome Analysis" (H. A. Lim, J. W. Fickett, C. R. Cantor, and R. J. Robbins, eds.), p. 465. World Scientific, Singapore, 1993.
5. X. Guan, R. Mural, S. Petrov, and E. C. Uberbacher, "Proceedings of Genome Sequencing and Analysis Conference V." Hilton Head Island, South Carolina, 1993.
6. J. W. Ficket, Nucleic Acids Res. 17, 5303 (1982).
7. J. W. Ficket and C. S. Tung, Nucleic Acids Res. 20, 6441 (1992).
8. V. V. Solovyev, A. A. Salamov, and C. B. Lawrence, Nucleic Acids Res. 22, 5156 (1994).
9. Y. Xu, R. Mural, and E. C. Uberbacher, Comput. Appl. Biosci. 10, 613 (1994).
10. Y. Xu, R. Mural, and E. C. Uberbacher, Comput. Appl. Biosci. 11, 117 (1995).
11. X. Guan and E. C. Uberbacher, "Alignment of DNA and Protein Sequences Containing Frameshift Errors," ORNL/TM-12976 (1995).
12. S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, J. Mol. Biol. 215, (1990).
13. T. F. Smith and M. S. Waterman, J. Mol. Biol. 147, 195 (1981).
14. X. Guan and E. C. Uberbacher, "Proceedings of First Pacific Symposium on Biocomputing," pp. 718-719. World Scientific Publishing, Singapore, 1996.
15. A. Califano and I. Rigoutsos, CABIOS in press.
16. F. Antequera and A. Bird, Proc. Natl. Acad. Sci. U.S.A. 90, 11995 (1993).
17. F. Larsen, G. Gundersen, R. Lopez, and H. Prydz, Genomics 13, 1095 (1992).
18. M. Gardiner-Garden and M. Frommer, J. Mol. Biol. 196, 261 (1987).
19. S. Matis, Y. Xu, M. Shah, X. Guan, J. R. Einstein, R. Mural, and E. C. Uberbacher, Comput. Chem. 20, 135-140 (1996).
20. J.-M. Claverie, Genomics 23, 575 (1994).
21. C. Fields, M. D. Adams, O. White, and J. Craig Venter, Nat. Genet. 7, 345 (1994).
22. A. Bairoch and B. Boeckman, Nucleic Acids Res. 21, 3093 (1993).
23. D. Benson, D. J. Lipman, and J. Ostell, Nucleic Acids Res. 21, 2963 (1993).
24. H. S. Bilofsky and C. Burks, Nucleic Acids Res. 16, 1861 (1988).
25. S. Beck, A. Kelly, E. Radley, F. Khurshid, R. P. Alderton, and J. Trowsdale, J. Mol. Biol. 228, 433 (1992).