-
1
-
-
3042756178
-
Direct interaction with HoxD proteins reverse Gli3-repressor function to promote digit formation downstream of Shh
-
Y. Chen, V. Knezevic, V. Ervin, R. Hutson, Y. Ward, and S. Mackem Direct interaction with HoxD proteins reverse Gli3-repressor function to promote digit formation downstream of Shh Development 131 2004 2339 2347
-
(2004)
Development
, vol.131
, pp. 2339-2347
-
-
Chen, Y.1
Knezevic, V.2
Ervin, V.3
Hutson, R.4
Ward, Y.5
MacKem, S.6
-
2
-
-
0034983477
-
Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference
-
G.C. Conant, and P.O. Lewis Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference Mol. Biol. Evol. 18 2001 1024 1033
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1024-1033
-
-
Conant, G.C.1
Lewis, P.O.2
-
5
-
-
0000122573
-
Phylip - Phylogeny inference package (version 3.2)
-
J. Felsenstein Phylip - phylogeny inference package (version 3.2) Cladistics 5 1989 164 166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
7
-
-
0028065237
-
Archetypal organization of the amphioxus hox gene cluster
-
J. Garcia-Fernández, and P.W. Holland Archetypal organization of the amphioxus hox gene cluster Nature 370 1994 563 566
-
(1994)
Nature
, vol.370
, pp. 563-566
-
-
Garcia-Fernández, J.1
Holland, P.W.2
-
8
-
-
0342908877
-
Analysis of correlations between sites in models of protein sequences
-
B.G. Giraud, A.S. Lapedes, and L.C. Liu Analysis of correlations between sites in models of protein sequences Phys. Rev. E 58 1998 6312 6322
-
(1998)
Phys. Rev. e
, vol.58
, pp. 6312-6322
-
-
Giraud, B.G.1
Lapedes, A.S.2
Liu, L.C.3
-
9
-
-
0034595516
-
Co-evolution of proteins with their interaction partners
-
C.-S. Goh, A.A. Bogdan, M. Joachimiak, D. Walther, and F.E. Cohen Co-evolution of proteins with their interaction partners J. Mol. Biol. 299 2000 283 293
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 283-293
-
-
Goh, C.-S.1
Bogdan, A.A.2
Joachimiak, M.3
Walther, D.4
Cohen, F.E.5
-
10
-
-
0025191217
-
Higher order structural elements in ribosomal RNAs: Pseudo-knots and the use of noncanonical pairs
-
R.R. Gutell, and C.R. Woese Higher order structural elements in ribosomal RNAs pseudo-knots and the use of noncanonical pairs Proc. Natl Acad. Sci. USA 87 1990 663 667
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 663-667
-
-
Gutell, R.R.1
Woese, C.R.2
-
11
-
-
0026466830
-
Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
-
R.R. Gutell, A. Power, G.Z. Hertz, E.J. Putz, and G.D. Stormo Identifying constraints on the higher-order structure of RNA continued development and application of comparative sequence analysis methods Nucl. Acids Res. 20 1992 5785 5795
-
(1992)
Nucl. Acids Res.
, vol.20
, pp. 5785-5795
-
-
Gutell, R.R.1
Power, A.2
Hertz, G.Z.3
Putz, E.J.4
Stormo, G.D.5
-
12
-
-
0033563463
-
Automatic detection of conserved base pairing patterns in RNA virus genomes
-
I.L. Hofacker, and P.F. Stadler Automatic detection of conserved base pairing patterns in RNA virus genomes Comp. and Chem. 23 1999 401 414
-
(1999)
Comp. and Chem.
, vol.23
, pp. 401-414
-
-
Hofacker, I.L.1
Stadler, P.F.2
-
13
-
-
0036301332
-
Secondary structure prediction for aligned RNA sequences
-
I.L. Hofacker, M. Fekete, and P.F. Stadler Secondary structure prediction for aligned RNA sequences J. Mol. Biol. 319 2002 1059 1066
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 1059-1066
-
-
Hofacker, I.L.1
Fekete, M.2
Stadler, P.F.3
-
14
-
-
0024707103
-
Two steps in the evolution of antennapedia-class vertebrate homeobox genes
-
C. Kappen, K. Schughart, and F.H. Ruddle Two steps in the evolution of antennapedia-class vertebrate homeobox genes Proc. Natl Acad. Sci. USA 86 1989 5459 5463
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 5459-5463
-
-
Kappen, C.1
Schughart, K.2
Ruddle, F.H.3
-
15
-
-
0029026878
-
Maintenance of pre-mRNA secondary structure by epistatic selection
-
D.A. Kirby, S.V. Muse, and W. Stephan Maintenance of pre-mRNA secondary structure by epistatic selection Proc. Natl Acad. Sci. USA 92 1995 9047 9051
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 9047-9051
-
-
Kirby, D.A.1
Muse, S.V.2
Stephan, W.3
-
17
-
-
0029898760
-
Extra specificity from extradenticle: The partnership between HOX and PBX/EXD homeodomain proteins
-
R.S. Mann, and S.-K. Chan Extra specificity from extradenticle the partnership between HOX and PBX/EXD homeodomain proteins Trends Genet. 12 1996 258 262
-
(1996)
Trends Genet.
, vol.12
, pp. 258-262
-
-
Mann, R.S.1
Chan, S.-K.2
-
18
-
-
0026504525
-
Homeobox genes and axial patterning
-
W. McGinnis, and R. Krumlauf Homeobox genes and axial patterning Cell 68 1992 283 302
-
(1992)
Cell
, vol.68
, pp. 283-302
-
-
McGinnis, W.1
Krumlauf, R.2
-
19
-
-
0036695534
-
CDNA hox sequences 3' of the homeobox isolated from the sea urchin Holopneustes purpurescens are definitive for sea urchin hox orthologues
-
V.B. Morris, J. Brammall, M. Byrne, and M. Frommer cDNA hox sequences 3' of the homeobox isolated from the sea urchin Holopneustes purpurescens are definitive for sea urchin hox orthologues DNA Sequence 13 2002 185 193
-
(2002)
DNA Sequence
, vol.13
, pp. 185-193
-
-
Morris, V.B.1
Brammall, J.2
Byrne, M.3
Frommer, M.4
-
20
-
-
0030770590
-
Graphs in sequence spaces: A review of statistical geometry
-
K. Nieselt-Struwe Graphs in sequence spaces a review of statistical geometry Biophys. Chem. 66 1997 111 131
-
(1997)
Biophys. Chem.
, vol.66
, pp. 111-131
-
-
Nieselt-Struwe, K.1
-
21
-
-
0038356582
-
Predicted protein-protein interaction sites from local sequence information
-
Y. Ofran, and B. Rost Predicted protein-protein interaction sites from local sequence information FEBS Lett. 544 2003 236 239
-
(2003)
FEBS Lett.
, vol.544
, pp. 236-239
-
-
Ofran, Y.1
Rost, B.2
-
22
-
-
0033807252
-
Sequence evolution and the mechanism of protein folding
-
A.R. Ortiz, and J. Skolnick Sequence evolution and the mechanism of protein folding Biophys. J. 79 2000 1787 1799
-
(2000)
Biophys. J.
, vol.79
, pp. 1787-1799
-
-
Ortiz, A.R.1
Skolnick, J.2
-
23
-
-
0033980890
-
Comparative sequence analysis and patterns of covariation in RNA secondary structures
-
J. Parsch, J.M. Braverman, and W. Stephan Comparative sequence analysis and patterns of covariation in RNA secondary structures Genetics 154 2000 909 921
-
(2000)
Genetics
, vol.154
, pp. 909-921
-
-
Parsch, J.1
Braverman, J.M.2
Stephan, W.3
-
24
-
-
0030821675
-
Correlated mutations contain information about protein-protein interaction
-
F. Pazos, M. Helmer-Citterich, G. Ausiello, and A. Valencia Correlated mutations contain information about protein-protein interaction J. Mol. Biol. 271 1997 511 523
-
(1997)
J. Mol. Biol.
, vol.271
, pp. 511-523
-
-
Pazos, F.1
Helmer-Citterich, M.2
Ausiello, G.3
Valencia, A.4
-
25
-
-
1842485064
-
Evidence for a hox14 paralog group in vertebrates
-
T.P. Powers, and C.T. Amemiya Evidence for a hox14 paralog group in vertebrates Current Biol. 14 2004 R183 R184
-
(2004)
Current Biol.
, vol.14
-
-
Powers, T.P.1
Amemiya, C.T.2
-
26
-
-
0035806973
-
Computational identification of noncoding RNAs in E. coli by comparative genomics
-
E. Rivas, R.J. Klein, T.A. Jones, and S.R. Eddy Computational identification of noncoding RNAs in E. coli by comparative genomics Curr. Biol. 11 2001 1369 1373
-
(2001)
Curr. Biol.
, vol.11
, pp. 1369-1373
-
-
Rivas, E.1
Klein, R.J.2
Jones, T.A.3
Eddy, S.R.4
-
27
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
N. Saitou, and M. Nei The neighbor-joining method a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
28
-
-
0030848853
-
AbdB-like hox proteins stabilize DNA binding by the Meis1 homeodomain proteins
-
W.F. Shen, J.C. Montgomery, S. Rozenfeld, J.J. Moskow, H.J. Lawrence, A.M. Buchberg, and C. Largman AbdB-like hox proteins stabilize DNA binding by the Meis1 homeodomain proteins Mol. Cell. Biol. 17 1997 6448 6458
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 6448-6458
-
-
Shen, W.F.1
Montgomery, J.C.2
Rozenfeld, S.3
Moskow, J.J.4
Lawrence, H.J.5
Buchberg, A.M.6
Largman, C.7
-
29
-
-
0028084754
-
Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?
-
I.N. Shindyalov, N.A. Kolchanov, and C. Sander Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations? Protein Eng. 7 1994 349 358
-
(1994)
Protein Eng.
, vol.7
, pp. 349-358
-
-
Shindyalov, I.N.1
Kolchanov, N.A.2
Sander, C.3
-
30
-
-
0043031450
-
Hox proteins functionally cooperate with GC-box binding protein system through distinct comains
-
M. Suzuki, N. Ueno, and A. Kuroiwa Hox proteins functionally cooperate with GC-box binding protein system through distinct comains J. Biol. Chem. 278 2003 30148 30156
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 30148-30156
-
-
Suzuki, M.1
Ueno, N.2
Kuroiwa, A.3
-
31
-
-
0036601150
-
Computational methods for the prediction of protein interactions
-
A. Valencia, and F. Pazos Computational methods for the prediction of protein interactions Curr. Opin. Struct. Biol. 12 2002 368 373
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 368-373
-
-
Valencia, A.1
Pazos, F.2
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