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Volumn 145, Issue 3, 2008, Pages 126-137

Identification of local selective sweeps in human populations since the exodus from Africa

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN; PROTEIN SLC24A5;

EID: 48449103609     PISSN: 00180661     EISSN: 16015223     Source Type: Journal    
DOI: 10.1111/j.0018-0661.2008.02054.x     Document Type: Article
Times cited : (18)

References (43)
  • 1
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey J. M., Zhang G., Zhang K. et al., (2002). Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12: 1805-1814.
    • (2002) Genome Res. , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3
  • 2
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • Altshuler D., Brooks L. D., Chakravarti A. et al., (2005). A haplotype map of the human genome. Nature 437: 1299-1320.
    • (2005) Nature , vol.437 , pp. 1299-1320
    • Altshuler, D.1    Brooks, L.D.2    Chakravarti, A.3
  • 3
    • 27144491328 scopus 로고    scopus 로고
    • Adaptive evolution of non-coding DNA in Drosophila
    • Andolfatto P., (2005). Adaptive evolution of non-coding DNA in Drosophila. Nature 437: 1149-1152.
    • (2005) Nature , vol.437 , pp. 1149-1152
    • Andolfatto, P.1
  • 4
    • 1642269679 scopus 로고    scopus 로고
    • Identifying adaptive genetic divergence among populations from genome scans
    • Beaumont M. A. and Balding D. J., (2004). Identifying adaptive genetic divergence among populations from genome scans. Mol. Ecol. 13: 969-980.
    • (2004) Mol. Ecol. , vol.13 , pp. 969-980
    • Beaumont, M.A.1    Balding, D.J.2
  • 5
    • 21444456797 scopus 로고    scopus 로고
    • Toward the 1,000 dollars human genome
    • Bennett S. T., Barnes C., Cox A. et al., (2005). Toward the 1,000 dollars human genome. Pharmacogenomics 6: 373-382.
    • (2005) Pharmacogenomics , vol.6 , pp. 373-382
    • Bennett, S.T.1    Barnes, C.2    Cox, A.3
  • 6
    • 33746237567 scopus 로고    scopus 로고
    • Genomic insights into positive selection
    • Biswas S. and Akey J. M., (2006). Genomic insights into positive selection. Trends Genet. 22: 437-446.
    • (2006) Trends Genet. , vol.22 , pp. 437-446
    • Biswas, S.1    Akey, J.M.2
  • 7
    • 27144539145 scopus 로고    scopus 로고
    • Natural selection on protein-coding genes in the human genome
    • Bustamante C. D., Fledel-Alon A., Williamson S. et al., (2005). Natural selection on protein-coding genes in the human genome. Nature 437: 1153-1157.
    • (2005) Nature , vol.437 , pp. 1153-1157
    • Bustamante, C.D.1    Fledel-Alon, A.2    Williamson, S.3
  • 8
    • 27544482154 scopus 로고    scopus 로고
    • Genomic regions exhibiting positive selection identified from dense genotype data
    • Carlson C. S., Thomas D. J., Eberle M. A. et al., (2005). Genomic regions exhibiting positive selection identified from dense genotype data. Genome Res. 15: 1553-1565.
    • (2005) Genome Res. , vol.15 , pp. 1553-1565
    • Carlson, C.S.1    Thomas, D.J.2    Eberle, M.A.3
  • 10
    • 0346243805 scopus 로고    scopus 로고
    • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
    • Clark A. G., Glanowski S., Nielsen R. et al., (2003). Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science 302: 1960-1963.
    • (2003) Science , vol.302 , pp. 1960-1963
    • Clark, A.G.1    Glanowski, S.2    Nielsen, R.3
  • 11
    • 33749394003 scopus 로고    scopus 로고
    • Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome
    • Eberle M. A., Rieder M. J., Kruglyak L. et al., (2006). Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome. PLoS Genet. 2: E142.
    • (2006) PLoS Genet. , vol.2
    • Eberle, M.A.1    Rieder, M.J.2    Kruglyak, L.3
  • 12
    • 0036479030 scopus 로고    scopus 로고
    • Identification of a variant associated with adult-type hypolactasia
    • Enattah N. S., Sahi T., Savilahti E. et al., (2002). Identification of a variant associated with adult-type hypolactasia. Nat. Genet. 30: 233-237.
    • (2002) Nat. Genet. , vol.30 , pp. 233-237
    • Enattah, N.S.1    Sahi, T.2    Savilahti, E.3
  • 13
    • 24644507039 scopus 로고    scopus 로고
    • Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans
    • Evans P. D., Gilbert S. L., Mekel-Bobrov N. et al., (2005). Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans. Science 309: 1717-1720.
    • (2005) Science , vol.309 , pp. 1717-1720
    • Evans, P.D.1    Gilbert, S.L.2    Mekel-Bobrov, N.3
  • 14
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay J. C. and Wu C. I., (2000). Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 15
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu Y. X. and Li W. H., (1993). Statistical tests of neutrality of mutations. Genetics 133: 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 16
    • 14944367557 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms in the MATP gene are associated with normal human pigmentation variation
    • Graf J., Hodgson R. and Van Daal A., (2005). Single nucleotide polymorphisms in the MATP gene are associated with normal human pigmentation variation. Hum. Mutat. 25: 278-284.
    • (2005) Hum. Mutat. , vol.25 , pp. 278-284
    • Graf, J.1    Hodgson, R.2    Van Daal, A.3
  • 17
    • 4444367508 scopus 로고    scopus 로고
    • Haplotype reconstruction from genotype data using imperfect phylogeny
    • Halperin E. and Eskin E., (2004). Haplotype reconstruction from genotype data using imperfect phylogeny. Bioinformatics 20: 1842-1849.
    • (2004) Bioinformatics , vol.20 , pp. 1842-1849
    • Halperin, E.1    Eskin, E.2
  • 18
    • 0033911892 scopus 로고    scopus 로고
    • Detection of the signature of natural selection in humans: Evidence from the Duffy blood group locus
    • Hamblin M. T. and Di Rienzo A., (2000). Detection of the signature of natural selection in humans: Evidence from the Duffy blood group locus. Am. J. Hum. Genet. 66: 1669-1679.
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 1669-1679
    • Hamblin, M.T.1    Di Rienzo, A.2
  • 19
    • 0036157464 scopus 로고    scopus 로고
    • Complex signatures of natural selection at the Duffy blood group locus
    • Hamblin M. T., Thompson E. E. and Di Rienzo A., (2002). Complex signatures of natural selection at the Duffy blood group locus. Am. J. Hum. Genet. 70: 369-383.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 369-383
    • Hamblin, M.T.1    Thompson, E.E.2    Di Rienzo, A.3
  • 20
    • 29244474907 scopus 로고    scopus 로고
    • Screening for recently selected alleles by analysis of human haplotype similarity
    • Hanchard N. A., Rockett K. A., Spencer C. et al., (2006). Screening for recently selected alleles by analysis of human haplotype similarity. Am. J. Hum. Genet. 78: 153-159.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 153-159
    • Hanchard, N.A.1    Rockett, K.A.2    Spencer, C.3
  • 21
    • 0036790812 scopus 로고    scopus 로고
    • Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster
    • Harr B., Kauer M. and Schlotterer C., (2002). Hitchhiking mapping: A population-based fine-mapping strategy for adaptive mutations in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 99: 12949-12954.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12949-12954
    • Harr, B.1    Kauer, M.2    Schlotterer, C.3
  • 22
    • 13844313862 scopus 로고    scopus 로고
    • Whole-genome patterns of common DNA variation in three human populations
    • Hinds D. A., Stuve L. L., Nilsen G. B. et al., (2005). Whole-genome patterns of common DNA variation in three human populations. Science 307: 1072-1079.
    • (2005) Science , vol.307 , pp. 1072-1079
    • Hinds, D.A.1    Stuve, L.L.2    Nilsen, G.B.3
  • 23
    • 0035159157 scopus 로고    scopus 로고
    • Lactase haplotype diversity in the Old World
    • Hollox E. J., Poulter M., Zvarik M. et al., (2001). Lactase haplotype diversity in the Old World. Am. J. Hum. Genet. 68: 160-172.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 160-172
    • Hollox, E.J.1    Poulter, M.2    Zvarik, M.3
  • 24
    • 29144485743 scopus 로고    scopus 로고
    • SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans
    • Lamason R. L., Mohideen M. A., Mest J. R. et al., (2005). SLC24A5, a putative cation exchanger, affects pigmentation in zebrafish and humans. Science 310: 1782-1786.
    • (2005) Science , vol.310 , pp. 1782-1786
    • Lamason, R.L.1    Mohideen, M.A.2    Mest, J.R.3
  • 25
    • 34247097012 scopus 로고    scopus 로고
    • Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms
    • Lao O., De Gruijter J. M., Van Duijn K. et al., (2007). Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms. Ann. Hum. Genet. 71: 354-369.
    • (2007) Ann. Hum. Genet. , vol.71 , pp. 354-369
    • Lao, O.1    De Gruijter, J.M.2    Van Duijn, K.3
  • 26
    • 0028067984 scopus 로고
    • Diverse mutations of the P gene among African-Americans with type II (tyrosinase-positive) oculocutaneous albinism (OCA2)
    • Lee S. T., Nicholls R. D., Schnur R. E. et al., (1994). Diverse mutations of the P gene among African-Americans with type II (tyrosinase-positive) oculocutaneous albinism (OCA2). Hum. Mol. Genet. 3: 2047-2051.
    • (1994) Hum. Mol. Genet. , vol.3 , pp. 2047-2051
    • Lee, S.T.1    Nicholls, R.D.2    Schnur, R.E.3
  • 27
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M., Egholm M., Altman W. E. et al., (2005). Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3
  • 28
    • 33749033325 scopus 로고    scopus 로고
    • The genetic architecture of normal variation in human pigmentation: An evolutionary perspective and model
    • Spec. No. 2
    • McEvoy B., Beleza S. and Shriver M. D., (2006). The genetic architecture of normal variation in human pigmentation: An evolutionary perspective and model. Hum. Mol. Genet. 15 Spec. No. 2: R176-181.
    • (2006) Hum. Mol. Genet. , vol.15
    • McEvoy, B.1    Beleza, S.2    Shriver, M.D.3
  • 29
    • 33845645529 scopus 로고    scopus 로고
    • Identifying genes underlying skin pigmentation differences among human populations
    • Myles S., Somel M., Tang K. et al., (2007). Identifying genes underlying skin pigmentation differences among human populations. Hum. Genet. 120: 613-621.
    • (2007) Hum. Genet. , vol.120 , pp. 613-621
    • Myles, S.1    Somel, M.2    Tang, K.3
  • 30
    • 20444430245 scopus 로고    scopus 로고
    • A scan for positively selected genes in the genomes of humans and chimpanzees
    • Nielsen R., Bustamante C., Clark A. G. et al., (2005). A scan for positively selected genes in the genomes of humans and chimpanzees. PLoS Biol. 3: E170.
    • (2005) PLoS Biol. , vol.3
    • Nielsen, R.1    Bustamante, C.2    Clark, A.G.3
  • 31
    • 0037167852 scopus 로고    scopus 로고
    • Detecting recent positive selection in the human genome from haplotype structure
    • Sabeti P. C., Reich D. E., Higgins J. M. et al., (2002). Detecting recent positive selection in the human genome from haplotype structure. Nature 419: 832-837.
    • (2002) Nature , vol.419 , pp. 832-837
    • Sabeti, P.C.1    Reich, D.E.2    Higgins, J.M.3
  • 32
    • 33745121154 scopus 로고    scopus 로고
    • Positive natural selection in the human lineage
    • Sabeti P. C., Schaffner S. F., Fry B. et al., (2006). Positive natural selection in the human lineage. Science 312: 1614-1620.
    • (2006) Science , vol.312 , pp. 1614-1620
    • Sabeti, P.C.1    Schaffner, S.F.2    Fry, B.3
  • 33
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • Sabeti P. C., Varilly P., Fry B. et al., (2007). Genome-wide detection and characterization of positive selection in human populations. Nature 449: 913-918.
    • (2007) Nature , vol.449 , pp. 913-918
    • Sabeti, P.C.1    Varilly, P.2    Fry, B.3
  • 34
    • 0037213556 scopus 로고    scopus 로고
    • Hitchhiking mapping - Functional genomics from the population genetics perspective
    • Schlotterer C., (2003). Hitchhiking mapping - functional genomics from the population genetics perspective. Trends Genet. 19: 32-38.
    • (2003) Trends Genet. , vol.19 , pp. 32-38
    • Schlotterer, C.1
  • 35
    • 28944447769 scopus 로고    scopus 로고
    • Evidence for recent positive selection at the human AIM1 locus in a European population
    • Soejima M., Tachida H., Ishida T. et al., (2006). Evidence for recent positive selection at the human AIM1 locus in a European population. Mol. Biol. Evol. 23: 179-188.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 179-188
    • Soejima, M.1    Tachida, H.2    Ishida, T.3
  • 36
    • 4644333804 scopus 로고    scopus 로고
    • SelSim: A program to simulate population genetic data with natural selection and recombination
    • Spencer C. C. and Coop G., (2004). SelSim: A program to simulate population genetic data with natural selection and recombination. Bioinformatics 20: 3673-3675.
    • (2004) Bioinformatics , vol.20 , pp. 3673-3675
    • Spencer, C.C.1    Coop, G.2
  • 37
    • 14844313712 scopus 로고    scopus 로고
    • Using genome scans of DNA polymorphism to infer adaptive population divergence
    • Storz J. F., (2005). Using genome scans of DNA polymorphism to infer adaptive population divergence. Mol. Ecol. 14: 671-688.
    • (2005) Mol. Ecol. , vol.14 , pp. 671-688
    • Storz, J.F.1
  • 38
    • 0023818575 scopus 로고
    • Genetic and fossil evidence for the origin of modern humans
    • Stringer C. B. and Andrews P., (1988). Genetic and fossil evidence for the origin of modern humans. Science 239: 1263-1268.
    • (1988) Science , vol.239 , pp. 1263-1268
    • Stringer, C.B.1    Andrews, P.2
  • 39
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F., (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 40
    • 33644981509 scopus 로고    scopus 로고
    • A map of recent positive selection in the human genome
    • Voight B. F., Kudaravalli S., Wen X. et al., (2006). A map of recent positive selection in the human genome. PLoS Biol. 4: E72.
    • (2006) PLoS Biol. , vol.4
    • Voight, B.F.1    Kudaravalli, S.2    Wen, X.3
  • 41
    • 30444460720 scopus 로고    scopus 로고
    • Global landscape of recent inferred Darwinian selection for Homo sapiens
    • Wang E. T., Kodama G., Baldi P. et al., (2006). Global landscape of recent inferred Darwinian selection for Homo sapiens. Proc. Natl Acad. Sci. USA 103: 135-140.
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 135-140
    • Wang, E.T.1    Kodama, G.2    Baldi, P.3
  • 42
    • 27544501017 scopus 로고    scopus 로고
    • Measures of human population structure show heterogeneity among genomic regions
    • Weir B. S., Cardon L. R., Anderson A. D. et al., (2005). Measures of human population structure show heterogeneity among genomic regions. Genome Res. 15: 1468-1476.
    • (2005) Genome Res. , vol.15 , pp. 1468-1476
    • Weir, B.S.1    Cardon, L.R.2    Anderson, A.D.3
  • 43
    • 34547786697 scopus 로고
    • Genetic structure of populations
    • Wright S., (1950). Genetic structure of populations. Br. Med. J. 4669: 36.
    • (1950) Br. Med. J. , vol.4669 , pp. 36
    • Wright, S.1


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