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Volumn 9, Issue 2, 2008, Pages

Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN FOS; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR PML RAR ALPHA; TRANSCRIPTION FACTOR RORA; TRANSCRIPTION FACTOR RXRA;

EID: 46749127803     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2008-9-2-r38     Document Type: Article
Times cited : (21)

References (92)
  • 2
    • 0037222293 scopus 로고    scopus 로고
    • The myeloid master regulator transcription factor PU.1 is inactivated by AML1-ETO in t(8;21) myeloid leukemia
    • 10.1182/blood-2002-04-1288 12393465
    • Vangala RK Heiss-Neumann MS Rangatia JS Singh SM Schoch C Tenen DG Hiddemann W Behre G The myeloid master regulator transcription factor PU.1 is inactivated by AML1-ETO in t(8;21) myeloid leukemia. Blood 2003, 101:270-277 10.1182/blood-2002-04-1288 12393465
    • (2003) Blood , vol.101 , pp. 270-277
    • Vangala, R.K.1    Heiss-Neumann, M.S.2    Rangatia, J.S.3    Singh, S.M.4    Schoch, C.5    Tenen, D.G.6    Hiddemann, W.7    Behre, G.8
  • 3
    • 0026757174 scopus 로고
    • Identification of breakpoints in t(8;21) acute myelogenous leukemia and isolation of a fusion transcript, AML1/ETO, with similarity to Drosophila segmentation gene, runt
    • 1391946
    • Erickson P Gao J Chang KS Look T Whisenant E Raimondi S Lasher R Trujillo J Rowley J Drabkin H Identification of breakpoints in t(8;21) acute myelogenous leukemia and isolation of a fusion transcript, AML1/ ETO, with similarity to Drosophila segmentation gene, runt. Blood 1992, 80:1825-1831 1391946
    • (1992) Blood , vol.80 , pp. 1825-1831
    • Erickson, P.1    Gao, J.2    Chang, K.S.3    Look, T.4    Whisenant, E.5    Raimondi, S.6    Lasher, R.7    Trujillo, J.8    Rowley, J.9    Drabkin, H.10
  • 4
    • 0025875679 scopus 로고
    • The PML-RAR alpha fusion mRNA generated by the t(15;17) translocation in acute promyelocytic leukemia encodes a functionally altered RAR
    • 10.1016/0092-8674(91)90113-D 1652369
    • de The H Lavau C Marchio A Chomienne C Degos L Dejean A The PML-RAR alpha fusion mRNA generated by the t(15;17) translocation in acute promyelocytic leukemia encodes a functionally altered RAR. Cell 1991, 66:675-684 10.1016/0092-8674(91)90113-D 1652369
    • (1991) Cell , vol.66 , pp. 675-684
    • de The, H.1    Lavau, C.2    Marchio, A.3    Chomienne, C.4    Degos, L.5    Dejean, A.6
  • 7
    • 33847271755 scopus 로고    scopus 로고
    • A core transcriptional network for early mesoderm development in Drosophila melanogaster
    • 1804332 17322403 10.1101/gad.1509007
    • Sandmann T Girardot C Brehme M Tongprasit W Stolc V Furlong EE A core transcriptional network for early mesoderm development in Drosophila melanogaster. Genes Dev 2007, 21:436-449 1804332 17322403 10.1101/ gad.1509007
    • (2007) Genes Dev , vol.21 , pp. 436-449
    • Sandmann, T.1    Girardot, C.2    Brehme, M.3    Tongprasit, W.4    Stolc, V.5    Furlong, E.E.6
  • 8
    • 0038048325 scopus 로고    scopus 로고
    • Inferring genetic networks and identifying compound mode of action via expression profiling
    • 10.1126/science.1081900 12843395
    • Gardner TS di Bernardo D Lorenz D Collins JJ Inferring genetic networks and identifying compound mode of action via expression profiling. Science 2003, 301:102-105 10.1126/science.1081900 12843395
    • (2003) Science , vol.301 , pp. 102-105
    • Gardner, T.S.1    di Bernardo, D.2    Lorenz, D.3    Collins, J.J.4
  • 9
    • 0037687416 scopus 로고    scopus 로고
    • Reverse engineering gene networks: Integrating genetic perturbations with dynamical modeling
    • 156306 12730377 10.1073/pnas.0933416100
    • Tegner J Yeung MK Hasty J Collins JJ Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling. Proc Natl Acad Sci USA 2003, 100:5944-5949 156306 12730377 10.1073/pnas.0933416100
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 5944-5949
    • Tegner, J.1    Yeung, M.K.2    Hasty, J.3    Collins, J.J.4
  • 10
    • 0037197936 scopus 로고    scopus 로고
    • Reverse engineering gene networks using singular value decomposition and robust regression
    • 122920 11983907 10.1073/pnas.092576199
    • Yeung MK Tegner J Collins JJ Reverse engineering gene networks using singular value decomposition and robust regression. Proc Natl Acad Sci USA 2002, 99:6163-6168 122920 11983907 10.1073/pnas.092576199
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6163-6168
    • Yeung, M.K.1    Tegner, J.2    Collins, J.J.3
  • 11
    • 12744261506 scopus 로고    scopus 로고
    • A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data
    • 10.1093/bioinformatics/bth463 15308537
    • Zou M Conzen SD A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data. Bioinformatics 2005, 21:71-79 10.1093/bioinformatics/bth463 15308537
    • (2005) Bioinformatics , vol.21 , pp. 71-79
    • Zou, M.1    Conzen, S.D.2
  • 12
    • 13844253637 scopus 로고    scopus 로고
    • A Bayesian approach to reconstructing genetic regulatory networks with hidden factors
    • 10.1093/bioinformatics/bti014 15353451
    • Beal MJ Falciani F Ghahramani Z Rangel C Wild DL A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinformatics 2005, 21:349-356 10.1093/bioinformatics/bti014 15353451
    • (2005) Bioinformatics , vol.21 , pp. 349-356
    • Beal, M.J.1    Falciani, F.2    Ghahramani, Z.3    Rangel, C.4    Wild, D.L.5
  • 13
    • 14844307159 scopus 로고    scopus 로고
    • Inferring quantitative models of regulatory networks from expression data
    • 10.1093/bioinformatics/bth941 15262806
    • Nachman I Regev A Friedman N Inferring quantitative models of regulatory networks from expression data. Bioinformatics 2004, 20(Suppl 1):I248-I256 10.1093/bioinformatics/bth941 15262806
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1
    • Nachman, I.1    Regev, A.2    Friedman, N.3
  • 14
    • 0142179209 scopus 로고    scopus 로고
    • Prediction of regulatory networks: Genome-wide identification of transcription factor targets from gene expression data
    • 10.1093/bioinformatics/btg347 14555624
    • Qian J Lin J Luscombe NM Yu H Gerstein M Prediction of regulatory networks: Genome-wide identification of transcription factor targets from gene expression data. Bioinformatics 2003, 19:1917-1926 10.1093/ bioinformatics/btg347 14555624
    • (2003) Bioinformatics , vol.19 , pp. 1917-1926
    • Qian, J.1    Lin, J.2    Luscombe, N.M.3    Yu, H.4    Gerstein, M.5
  • 16
    • 33748654580 scopus 로고    scopus 로고
    • Inferring gene regulatory networks from time series data using the minimum description length principle
    • 10.1093/bioinformatics/btl364 16845143
    • Zhao W Serpedin E Dougherty ER Inferring gene regulatory networks from time series data using the minimum description length principle. Bioinformatics 2006, 22:2129-2135 10.1093/bioinformatics/btl364 16845143
    • (2006) Bioinformatics , vol.22 , pp. 2129-2135
    • Zhao, W.1    Serpedin, E.2    Dougherty, E.R.3
  • 17
    • 1242342957 scopus 로고    scopus 로고
    • Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification
    • 373293 14704355 10.1093/nar/gkh183
    • Haverty PM Hansen U Weng Z Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification. Nucleic Acids Res 2004, 32:179-188 373293 14704355 10.1093/nar/gkh183
    • (2004) Nucleic Acids Res , vol.32 , pp. 179-188
    • Haverty, P.M.1    Hansen, U.2    Weng, Z.3
  • 18
    • 33845971293 scopus 로고    scopus 로고
    • Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria
    • 1698941 17173478 10.1371/journal.pcbi.0020163
    • Rodionov DA Gelfand MS Todd JD Curson AR Johnston AW Computational reconstruction of iron- and manganese-responsive transcriptional networks in alpha-proteobacteria. PLoS Comput Biol 2006, 2:e163 1698941 17173478 10.1371/journal.pcbi.0020163
    • (2006) PLoS Comput Biol , vol.2
    • Rodionov, D.A.1    Gelfand, M.S.2    Todd, J.D.3    Curson, A.R.4    Johnston, A.W.5
  • 19
    • 0035946917 scopus 로고    scopus 로고
    • Computer-assisted identification of cell cycle-related genes: New targets for E2F transcription factors
    • 10.1006/jmbi.2001.4650 11491305
    • Kel AE Kel-Margoulis OV Farnham PJ Bartley SM Wingender E Zhang MQ Computer-assisted identification of cell cycle-related genes: New targets for E2F transcription factors. J Mol Biol 2001, 309:99-120 10.1006/jmbi.2001.4650 11491305
    • (2001) J Mol Biol , vol.309 , pp. 99-120
    • Kel, A.E.1    Kel-Margoulis, O.V.2    Farnham, P.J.3    Bartley, S.M.4    Wingender, E.5    Zhang, M.Q.6
  • 20
    • 0037396807 scopus 로고    scopus 로고
    • Computationally identifying novel NF-kappa B-regulated immune genes in the human genome
    • 430162 12654722 10.1101/gr.911803
    • Liu R McEachin RC States DJ Computationally identifying novel NF-kappa B-regulated immune genes in the human genome. Genome Res 2003, 13:654-661 430162 12654722 10.1101/gr.911803
    • (2003) Genome Res , vol.13 , pp. 654-661
    • Liu, R.1    McEachin, R.C.2    States, D.J.3
  • 21
    • 32144445039 scopus 로고    scopus 로고
    • A bi-dimensional regression tree approach to the modeling of gene expression regulation
    • 10.1093/bioinformatics/bti792 16303796
    • Ruan J Zhang W A bi-dimensional regression tree approach to the modeling of gene expression regulation. Bioinformatics 2006, 22:332-340 10.1093/ bioinformatics/bti792 16303796
    • (2006) Bioinformatics , vol.22 , pp. 332-340
    • Ruan, J.1    Zhang, W.2
  • 22
    • 15944376548 scopus 로고    scopus 로고
    • A statistical method for constructing transcriptional regulatory networks using gene expression and sequence data
    • 10.1089/cmb.2005.12.229 15767778
    • Xing B van der Laan MJ A statistical method for constructing transcriptional regulatory networks using gene expression and sequence data. J Comput Biol 2005, 12:229-246 10.1089/cmb.2005.12.229 15767778
    • (2005) J Comput Biol , vol.12 , pp. 229-246
    • Xing, B.1    van der Laan, M.J.2
  • 23
    • 13844319583 scopus 로고    scopus 로고
    • Inference of combinatorial regulation in yeast transcriptional networks: A case study of sporulation
    • 548531 15684073 10.1073/pnas.0405537102
    • Wang W Cherry JM Nochomovitz Y Jolly E Botstein D Li H Inference of combinatorial regulation in yeast transcriptional networks: A case study of sporulation. Proc Natl Acad Sci USA 2005, 102:1998-2003 548531 15684073 10.1073/pnas.0405537102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 1998-2003
    • Wang, W.1    Cherry, J.M.2    Nochomovitz, Y.3    Jolly, E.4    Botstein, D.5    Li, H.6
  • 24
    • 33645107349 scopus 로고    scopus 로고
    • Bayesian sparse hidden components analysis for transcription regulation networks
    • 10.1093/bioinformatics/btk017 16368767
    • Sabatti C James GM Bayesian sparse hidden components analysis for transcription regulation networks. Bioinformatics 2006, 22:739-746 10.1093/bioinformatics/btk017 16368767
    • (2006) Bioinformatics , vol.22 , pp. 739-746
    • Sabatti, C.1    James, G.M.2
  • 26
    • 2942582468 scopus 로고    scopus 로고
    • Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
    • 407845 15113405 10.1186/1471-2105-5-31
    • Gao F Foat BC Bussemaker HJ Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. BMC Bioinformatics 2004, 5:31 407845 15113405 10.1186/ 1471-2105-5-31
    • (2004) BMC Bioinformatics , vol.5 , pp. 31
    • Gao, F.1    Foat, B.C.2    Bussemaker, H.J.3
  • 27
    • 9144248513 scopus 로고    scopus 로고
    • Combined analysis of expression data and transcription factor binding sites in the yeast genome
    • 517709 15331021 10.1186/1471-2164-5-59
    • Nagaraj VH O'Flanagan RA Bruning AR Mathias JR Vershon AK Sengupta AM Combined analysis of expression data and transcription factor binding sites in the yeast genome. BMC Genomics 2004, 5:59 517709 15331021 10.1186/1471-2164-5-59
    • (2004) BMC Genomics , vol.5 , pp. 59
    • Nagaraj, V.H.1    O'Flanagan, R.A.2    Bruning, A.R.3    Mathias, J.R.4    Vershon, A.K.5    Sengupta, A.M.6
  • 29
    • 33644674789 scopus 로고    scopus 로고
    • A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles
    • 1415218 16449500 10.1101/gr.4303406
    • Chang LW Nagarajan R Magee JA Milbrandt J Stormo GD A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles. Genome Res 2006, 16:405-413 1415218 16449500 10.1101/gr.4303406
    • (2006) Genome Res , vol.16 , pp. 405-413
    • Chang, L.W.1    Nagarajan, R.2    Magee, J.A.3    Milbrandt, J.4    Stormo, G.D.5
  • 30
    • 33846887186 scopus 로고    scopus 로고
    • Commonly dysregulated genes in murine APL cells
    • 1785140 17008535 10.1182/blood-2006-07-036640
    • Yuan W Payton JE Holt MS Link DC Watson MA DiPersio JF Ley TJ Commonly dysregulated genes in murine APL cells. Blood 2007, 109:961-970 1785140 17008535 10.1182/blood-2006-07-036640
    • (2007) Blood , vol.109 , pp. 961-970
    • Yuan, W.1    Payton, J.E.2    Holt, M.S.3    Link, D.C.4    Watson, M.A.5    DiPersio, J.F.6    Ley, T.J.7
  • 32
    • 0347125328 scopus 로고    scopus 로고
    • JASPAR: An open-access database for eukaryotic transcription factor binding profiles
    • 308747 14681366 10.1093/nar/gkh012
    • Sandelin A Alkema W Engstrom P Wasserman WW Lenhard B JASPAR: An open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res 2004, 32:D91-94 308747 14681366 10.1093/nar/ gkh012
    • (2004) Nucleic Acids Res , vol.32
    • Sandelin, A.1    Alkema, W.2    Engstrom, P.3    Wasserman, W.W.4    Lenhard, B.5
  • 33
    • 33846067075 scopus 로고    scopus 로고
    • PReMod: A database of genome-wide mammalian cis-regulatory module predictions
    • 1761432 17148480 10.1093/nar/gkl879
    • Ferretti V Poitras C Bergeron D Coulombe B Robert F Blanchette M PReMod: a database of genome-wide mammalian cis-regulatory module predictions. Nucleic Acids Res 2007, 35:D122-126 1761432 17148480 10.1093/nar/gkl879
    • (2007) Nucleic Acids Res , vol.35
    • Ferretti, V.1    Poitras, C.2    Bergeron, D.3    Coulombe, B.4    Robert, F.5    Blanchette, M.6
  • 34
    • 0029584212 scopus 로고
    • Granulocyte-macrophage colony-stimulating factor induces the transcriptional activation of egr-1 through a protein kinase A-independent signaling pathway
    • 10.1074/jbc.270.51.30271 8530445
    • Wong A Sakamoto KM Granulocyte-macrophage colony-stimulating factor induces the transcriptional activation of egr-1 through a protein kinase A-independent signaling pathway. J Biol Chem 1995, 270:30271-30273 10.1074/jbc.270.51.30271 8530445
    • (1995) J Biol Chem , vol.270 , pp. 30271-30273
    • Wong, A.1    Sakamoto, K.M.2
  • 35
    • 0035283135 scopus 로고    scopus 로고
    • Early growth response gene 1 stimulates development of hematopoietic progenitor cells along the macrophage lineage at the expense of the granulocyte and erythroid lineages
    • 10.1182/blood.V97.5.1298 11222373
    • Krishnaraju K Hoffman B Liebermann DA Early growth response gene 1 stimulates development of hematopoietic progenitor cells along the macrophage lineage at the expense of the granulocyte and erythroid lineages. Blood 2001, 97:1298-1305 10.1182/blood.V97.5.1298 11222373
    • (2001) Blood , vol.97 , pp. 1298-1305
    • Krishnaraju, K.1    Hoffman, B.2    Liebermann, D.A.3
  • 36
    • 0029142818 scopus 로고
    • Physical mapping of the minimal region of loss in 5q-chromosome
    • 41348 7638206 10.1073/pnas.92.16.7406
    • Fairman J Chumakov I Chinault AC Nowell PC Nagarajan L Physical mapping of the minimal region of loss in 5q-chromosome. Proc Natl Acad Sci USA 1995, 92:7406-7410 41348 7638206 10.1073/pnas.92.16.7406
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 7406-7410
    • Fairman, J.1    Chumakov, I.2    Chinault, A.C.3    Nowell, P.C.4    Nagarajan, L.5
  • 39
    • 0027965988 scopus 로고
    • Nerve growth factor induces transcription of transforming growth factor-beta 1 through a specific promoter element in PC12 cells
    • 8106419
    • Kim SJ Park K Rudkin BB Dey BR Sporn MB Roberts AB Nerve growth factor induces transcription of transforming growth factor-beta 1 through a specific promoter element in PC12 cells. J Biol Chem 1994, 269:3739-3744 8106419
    • (1994) J Biol Chem , vol.269 , pp. 3739-3744
    • Kim, S.J.1    Park, K.2    Rudkin, B.B.3    Dey, B.R.4    Sporn, M.B.5    Roberts, A.B.6
  • 40
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • 33173 11309499 10.1073/pnas.091062498
    • Tusher VG Tibshirani R Chu G Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 2001, 98:5116-5121 33173 11309499 10.1073/pnas.091062498
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 41
    • 0035869396 scopus 로고    scopus 로고
    • Cell-cycle-dependent activation of mitogen-activated protein kinase kinase (MEK-1/2) in myeloid leukemia cell lines and induction of growth inhibition and apoptosis by inhibitors of RAS signaling
    • 10.1182/blood.V97.6.1823 11238126
    • Morgan MA Dolp O Reuter CW Cell-cycle-dependent activation of mitogen-activated protein kinase kinase (MEK-1/2) in myeloid leukemia cell lines and induction of growth inhibition and apoptosis by inhibitors of RAS signaling. Blood 2001, 97:1823-1834 10.1182/ blood.V97.6.1823 11238126
    • (2001) Blood , vol.97 , pp. 1823-1834
    • Morgan, M.A.1    Dolp, O.2    Reuter, C.W.3
  • 42
    • 2542432106 scopus 로고    scopus 로고
    • Fos modulates myeloid cell survival and differentiation and partially abrogates the c-Myc block in terminal myeloid differentiation
    • 10.1182/blood-2002-09-2704 14982872
    • Shafarenko M Amanullah A Gregory B Liebermann DA Hoffman B Fos modulates myeloid cell survival and differentiation and partially abrogates the c-Myc block in terminal myeloid differentiation. Blood 2004, 103:4259-4267 10.1182/blood-2002-09-2704 14982872
    • (2004) Blood , vol.103 , pp. 4259-4267
    • Shafarenko, M.1    Amanullah, A.2    Gregory, B.3    Liebermann, D.A.4    Hoffman, B.5
  • 43
    • 0036190076 scopus 로고    scopus 로고
    • Constitutive activation of STAT3 and STAT5 is induced by leukemic fusion proteins with protein tyrosine kinase activity and is sufficient for transformation of hematopoietic precursor cells
    • 10.1016/S0301-472X(01)00787-1 11882364
    • Spiekermann K Pau M Schwab R Schmieja K Franzrahe S Hiddemann W Constitutive activation of STAT3 and STAT5 is induced by leukemic fusion proteins with protein tyrosine kinase activity and is sufficient for transformation of hematopoietic precursor cells. Exp Hematol 2002, 30:262-271 10.1016/S0301-472X(01)00787-1 11882364
    • (2002) Exp Hematol , vol.30 , pp. 262-271
    • Spiekermann, K.1    Pau, M.2    Schwab, R.3    Schmieja, K.4    Franzrahe, S.5    Hiddemann, W.6
  • 45
    • 0030946973 scopus 로고    scopus 로고
    • Discrete roles of the Spc1 kinase and the Atf1 transcription factor in the UV response of Schizosaccharomyces pombe
    • 232188 9154834
    • Degols G Russell P Discrete roles of the Spc1 kinase and the Atf1 transcription factor in the UV response of Schizosaccharomyces pombe. Mol Cell Biol 1997, 17:3356-3363 232188 9154834
    • (1997) Mol Cell Biol , vol.17 , pp. 3356-3363
    • Degols, G.1    Russell, P.2
  • 46
    • 2442478144 scopus 로고    scopus 로고
    • PML-RARA-RXR oligomers mediate retinoid and rexinoid/cAMP cross-talk in acute promyelocytic leukemia cell differentiation
    • 2211888 15096541 10.1084/jem.20032226
    • Kamashev D Vitoux D De The H PML-RARA-RXR oligomers mediate retinoid and rexinoid/cAMP cross-talk in acute promyelocytic leukemia cell differentiation. J Exp Med 2004, 199:1163-1174 2211888 15096541 10.1084/ jem.20032226
    • (2004) J Exp Med , vol.199 , pp. 1163-1174
    • Kamashev, D.1    Vitoux, D.2    De The, H.3
  • 47
    • 34547594352 scopus 로고    scopus 로고
    • PAP: A comprehensive workbench for mammalian transcriptional regulatory sequence analysis
    • 1933204 17517777 10.1093/nar/gkm308
    • Chang LW Fontaine BR Stormo GD Nagarajan R PAP: A comprehensive workbench for mammalian transcriptional regulatory sequence analysis. Nucleic Acids Res 2007, 35(Web Server):W238-244 1933204 17517777 10.1093/ nar/gkm308
    • (2007) Nucleic Acids Res , vol.35
    • Chang, L.W.1    Fontaine, B.R.2    Stormo, G.D.3    Nagarajan, R.4
  • 48
    • 0028197552 scopus 로고
    • Isoform-specific amino-terminal domains dictate DNA-binding properties of ROR alpha, a novel family of orphan hormone nuclear receptors
    • 10.1101/gad.8.5.538 7926749
    • Giguere V Tini M Flock G Ong E Evans RM Otulakowski G Isoform-specific amino-terminal domains dictate DNA-binding properties of ROR alpha, a novel family of orphan hormone nuclear receptors. Genes Dev 1994, 8:538-553 10.1101/gad.8.5.538 7926749
    • (1994) Genes Dev , vol.8 , pp. 538-553
    • Giguere, V.1    Tini, M.2    Flock, G.3    Ong, E.4    Evans, R.M.5    Otulakowski, G.6
  • 49
    • 0029151750 scopus 로고
    • The orphan nuclear receptor ROR alpha (RORA) maps to a conserved region of homology on human chromosome 15q21-q22 and mouse chromosome 9
    • 10.1006/geno.1995.1197 7490103
    • Giguere V Beatty B Squire J Copeland NG Jenkins NA The orphan nuclear receptor ROR alpha (RORA) maps to a conserved region of homology on human chromosome 15q21-q22 and mouse chromosome 9. Genomics 1995, 28:596-598 10.1006/geno.1995.1197 7490103
    • (1995) Genomics , vol.28 , pp. 596-598
    • Giguere, V.1    Beatty, B.2    Squire, J.3    Copeland, N.G.4    Jenkins, N.A.5
  • 50
    • 33751531527 scopus 로고    scopus 로고
    • Normal hematopoiesis after conditional targeting of RXRalpha in murine hematopoietic stem/progenitor cells
    • 10.1189/jlb.0206097 16888087
    • Ricote M Snyder CS Leung HY Chen J Chien KR Glass CK Normal hematopoiesis after conditional targeting of RXRalpha in murine hematopoietic stem/progenitor cells. J Leukoc Biol 2006, 80:850-861 10.1189/jlb.0206097 16888087
    • (2006) J Leukoc Biol , vol.80 , pp. 850-861
    • Ricote, M.1    Snyder, C.S.2    Leung, H.Y.3    Chen, J.4    Chien, K.R.5    Glass, C.K.6
  • 52
    • 34347396203 scopus 로고    scopus 로고
    • Recruitment of RXR by homotetrameric RARalpha fusion proteins is essential for transformation
    • 10.1016/j.ccr.2007.06.006 17613435
    • Zeisig BB Kwok C Zelent A Shankaranarayanan P Gronemeyer H Dong S So CW Recruitment of RXR by homotetrameric RARalpha fusion proteins is essential for transformation. Cancer Cell 2007, 12:36-51 10.1016/ j.ccr.2007.06.006 17613435
    • (2007) Cancer Cell , vol.12 , pp. 36-51
    • Zeisig, B.B.1    Kwok, C.2    Zelent, A.3    Shankaranarayanan, P.4    Gronemeyer, H.5    Dong, S.6    So, C.W.7
  • 53
    • 33745033595 scopus 로고    scopus 로고
    • Pro-proliferative function of the long isoform of PML-RARalpha involved in acute promyelocytic leukemia
    • 10.1038/sj.onc.1209388 16434964
    • Tussie-Luna MI Rozo L Roy AL Pro-proliferative function of the long isoform of PML-RARalpha involved in acute promyelocytic leukemia. Oncogene 2006, 25:3375-3386 10.1038/sj.onc.1209388 16434964
    • (2006) Oncogene , vol.25 , pp. 3375-3386
    • Tussie-Luna, M.I.1    Rozo, L.2    Roy, A.L.3
  • 54
    • 0027362933 scopus 로고
    • The PML-retinoic acid receptor alpha translocation converts the receptor from an inhibitor to a retinoic acid-dependent activator of transcription factor AP-1
    • 47564 8415704 10.1073/pnas.90.20.9345
    • Doucas V Brockes JP Yaniv M de The H Dejean A The PML-retinoic acid receptor alpha translocation converts the receptor from an inhibitor to a retinoic acid-dependent activator of transcription factor AP-1. Proc Natl Acad Sci USA 1993, 90:9345-9349 47564 8415704 10.1073/ pnas.90.20.9345
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 9345-9349
    • Doucas, V.1    Brockes, J.P.2    Yaniv, M.3    de The, H.4    Dejean, A.5
  • 55
    • 0031941912 scopus 로고    scopus 로고
    • Distinct interactions of PML-RARalpha and PLZF-RARalpha with co-repressors determine differential responses to RA in APL
    • 10.1038/ng0298-126 9462740
    • He LZ Guidez F Tribioli C Peruzzi D Ruthardt M Zelent A Pandolfi PP Distinct interactions of PML-RARalpha and PLZF-RARalpha with co-repressors determine differential responses to RA in APL. Nat Genet 1998, 18:126-135 10.1038/ng0298-126 9462740
    • (1998) Nat Genet , vol.18 , pp. 126-135
    • He, L.Z.1    Guidez, F.2    Tribioli, C.3    Peruzzi, D.4    Ruthardt, M.5    Zelent, A.6    Pandolfi, P.P.7
  • 57
    • 34547136219 scopus 로고    scopus 로고
    • Aberrant association of promyelocytic leukemia protein-retinoic acid receptor-{alpha} with coactivators contributes to its ability to regulate gene expression
    • 10.1074/jbc.M700330200 17475621
    • Reineke EL Liu H Lam M Liu Y Kao HY Aberrant association of promyelocytic leukemia protein-retinoic acid receptor-{alpha} with coactivators contributes to its ability to regulate gene expression. J Biol Chem 2007, 282:18584-18596 10.1074/jbc.M700330200 17475621
    • (2007) J Biol Chem , vol.282 , pp. 18584-18596
    • Reineke, E.L.1    Liu, H.2    Lam, M.3    Liu, Y.4    Kao, H.Y.5
  • 58
    • 0034144710 scopus 로고    scopus 로고
    • Leukemia initiated by PMLRARalpha: The PML domain plays a critical role while retinoic acid-mediated transactivation is dispensable
    • 10688806
    • Kogan SC Hong SH Shultz DB Privalsky ML Bishop JM Leukemia initiated by PMLRARalpha: The PML domain plays a critical role while retinoic acid-mediated transactivation is dispensable. Blood 2000, 95:1541-1550 10688806
    • (2000) Blood , vol.95 , pp. 1541-1550
    • Kogan, S.C.1    Hong, S.H.2    Shultz, D.B.3    Privalsky, M.L.4    Bishop, J.M.5
  • 59
    • 33747196725 scopus 로고    scopus 로고
    • Multilineage transcriptional priming and determination of alternate hematopoietic cell fates
    • 10.1016/j.cell.2006.06.052 16923394
    • Laslo P Spooner CJ Warmflash A Lancki DW Lee HJ Sciammas R Gantner BN Dinner AR Singh H Multilineage transcriptional priming and determination of alternate hematopoietic cell fates. Cell 2006, 126:755-766 10.1016/ j.cell.2006.06.052 16923394
    • (2006) Cell , vol.126 , pp. 755-766
    • Laslo, P.1    Spooner, C.J.2    Warmflash, A.3    Lancki, D.W.4    Lee, H.J.5    Sciammas, R.6    Gantner, B.N.7    Dinner, A.R.8    Singh, H.9
  • 60
    • 5444226387 scopus 로고    scopus 로고
    • An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression
    • 528918 15489324 10.1101/gr.2584104
    • Messina DN Glasscock J Gish W Lovett M An ORFeome-based analysis of human transcription factor genes and the construction of a microarray to interrogate their expression. Genome Res 2004, 14:2041-2047 528918 15489324 10.1101/gr.2584104
    • (2004) Genome Res , vol.14 , pp. 2041-2047
    • Messina, D.N.1    Glasscock, J.2    Gish, W.3    Lovett, M.4
  • 61
    • 0027104297 scopus 로고
    • Selection of high affinity RNA ligands to the bacteriophage R17 coat protein
    • 10.1016/0022-2836(92)90870-P 1469719
    • Schneider D Tuerk C Gold L Selection of high affinity RNA ligands to the bacteriophage R17 coat protein. J Mol Biol 1992, 228:862-869 10.1016/ 0022-2836(92)90870-P 1469719
    • (1992) J Mol Biol , vol.228 , pp. 862-869
    • Schneider, D.1    Tuerk, C.2    Gold, L.3
  • 62
    • 15244358503 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
    • 10.1038/nature03441 15735639
    • Xie X Lu J Kulbokas EJ Golub TR Mootha V Lindblad-Toh K Lander ES Kellis M Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 2005, 434:338-345 10.1038/nature03441 15735639
    • (2005) Nature , vol.434 , pp. 338-345
    • Xie, X.1    Lu, J.2    Kulbokas, E.J.3    Golub, T.R.4    Mootha, V.5    Lindblad-Toh, K.6    Lander, E.S.7    Kellis, M.8
  • 63
    • 28444484981 scopus 로고    scopus 로고
    • Identifying the conserved network of cis-regulatory sites of a eukaryotic genome
    • 1297658 16301543 10.1073/pnas.0505147102
    • Wang T Stormo GD Identifying the conserved network of cis-regulatory sites of a eukaryotic genome. Proc Natl Acad Sci USA 2005, 102:17400-17405 1297658 16301543 10.1073/pnas.0505147102
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 17400-17405
    • Wang, T.1    Stormo, G.D.2
  • 67
    • 0020480251 scopus 로고
    • Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli
    • 320670 7048259 10.1093/nar/10.9.2997
    • Stormo GD Schneider TD Gold L Ehrenfeucht A Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. Nucleic Acids Res 1982, 10:2997-3011 320670 7048259 10.1093/nar/10.9.2997
    • (1982) Nucleic Acids Res , vol.10 , pp. 2997-3011
    • Stormo, G.D.1    Schneider, T.D.2    Gold, L.3    Ehrenfeucht, A.4
  • 68
    • 0024604438 scopus 로고
    • Methods for calculating the probabilities of finding patterns in sequences
    • 2720468
    • Staden R Methods for calculating the probabilities of finding patterns in sequences. Comput Appl Biosci 1989, 5:89-96 2720468
    • (1989) Comput Appl Biosci , vol.5 , pp. 89-96
    • Staden, R.1
  • 69
    • 28244474539 scopus 로고    scopus 로고
    • Distal enhancer elements transcribe intergenic RNA in the IL-10 family gene cluster
    • 16301651
    • Jones EA Flavell RA Distal enhancer elements transcribe intergenic RNA in the IL-10 family gene cluster. J Immunol 2005, 175:7437-7446 16301651
    • (2005) J Immunol , vol.175 , pp. 7437-7446
    • Jones, E.A.1    Flavell, R.A.2
  • 70
    • 2442429603 scopus 로고    scopus 로고
    • Tumor necrosis factor alpha activates the human plasminogen activator inhibitor-1 gene through a distal nuclear factor kappaB site
    • 10.1074/jbc.M310438200 14963043
    • Hou B Eren M Painter CA Covington JW Dixon JD Schoenhard JA Vaughan DE Tumor necrosis factor alpha activates the human plasminogen activator inhibitor-1 gene through a distal nuclear factor kappaB site. J Biol Chem 2004, 279:18127-18136 10.1074/jbc.M310438200 14963043
    • (2004) J Biol Chem , vol.279 , pp. 18127-18136
    • Hou, B.1    Eren, M.2    Painter, C.A.3    Covington, J.W.4    Dixon, J.D.5    Schoenhard, J.A.6    Vaughan, D.E.7
  • 71
    • 4644331398 scopus 로고    scopus 로고
    • A ternary complex of transcription factors, Nished and NFATc4, and co-activator p300 bound to an intronic sequence, intronic regulatory element, is pivotal for the up-regulation of myosin light chain-2v gene in cardiac hypertrophy
    • 10.1074/jbc.M403578200 15272022
    • Mathew S Mascareno E Siddiqui MA A ternary complex of transcription factors, Nished and NFATc4, and co-activator p300 bound to an intronic sequence, intronic regulatory element, is pivotal for the up-regulation of myosin light chain-2v gene in cardiac hypertrophy. J Biol Chem 2004, 279:41018-41027 10.1074/jbc.M403578200 15272022
    • (2004) J Biol Chem , vol.279 , pp. 41018-41027
    • Mathew, S.1    Mascareno, E.2    Siddiqui, M.A.3
  • 72
    • 0037205415 scopus 로고    scopus 로고
    • Isolation and characterization of a human STAT1 gene regulatory element. Inducibility by interferon (IFN) types I and II and role of IFN regulatory factor-1
    • 10.1074/jbc.M111302200 11909852
    • Wong LH Sim H Chatterjee-Kishore M Hatzinisiriou I Devenish RJ Stark G Ralph SJ Isolation and characterization of a human STAT1 gene regulatory element. Inducibility by interferon (IFN) types I and II and role of IFN regulatory factor-1. J Biol Chem 2002, 277:19408-19417 10.1074/ jbc.M111302200 11909852
    • (2002) J Biol Chem , vol.277 , pp. 19408-19417
    • Wong, L.H.1    Sim, H.2    Chatterjee-Kishore, M.3    Hatzinisiriou, I.4    Devenish, R.J.5    Stark, G.6    Ralph, S.J.7
  • 73
    • 10744222156 scopus 로고    scopus 로고
    • Identification and characterization of multi-species conserved sequences
    • 403793 14656959 10.1101/gr.1602203
    • Margulies EH Blanchette M Haussler D Green ED Identification and characterization of multi-species conserved sequences. Genome Res 2003, 13:2507-2518 403793 14656959 10.1101/gr.1602203
    • (2003) Genome Res , vol.13 , pp. 2507-2518
    • Margulies, E.H.1    Blanchette, M.2    Haussler, D.3    Green, E.D.4
  • 74
    • 0036105591 scopus 로고    scopus 로고
    • rVista for comparative sequence-based discovery of functional transcription factor binding sites
    • 186580 11997350 10.1101/gr.225502. Article published online before print in April 2002
    • Loots GG Ovcharenko I Pachter L Dubchak I Rubin EM rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res 2002, 12:832-839 186580 11997350 10.1101/ gr.225502. Article published online before print in April 2002
    • (2002) Genome Res , vol.12 , pp. 832-839
    • Loots, G.G.1    Ovcharenko, I.2    Pachter, L.3    Dubchak, I.4    Rubin, E.M.5
  • 76
    • 33344474674 scopus 로고    scopus 로고
    • EVI1 and hematopoietic disorders: History and perspectives
    • 10.1016/j.gene.2005.09.020 16314052
    • Nucifora G Laricchia-Robbio L Senyuk V EVI1 and hematopoietic disorders: history and perspectives. Gene 2006, 368:1-11 10.1016/j.gene.2005.09.020 16314052
    • (2006) Gene , vol.368 , pp. 1-11
    • Nucifora, G.1    Laricchia-Robbio, L.2    Senyuk, V.3
  • 78
    • 14944369329 scopus 로고    scopus 로고
    • Smad7 alters cell fate decisions of human hematopoietic repopulating cells
    • 10.1182/blood-2004-03-0881 15498852
    • Chadwick K Shojaei F Gallacher L Bhatia M Smad7 alters cell fate decisions of human hematopoietic repopulating cells. Blood 2005, 105:1905-1915 10.1182/blood-2004-03-0881 15498852
    • (2005) Blood , vol.105 , pp. 1905-1915
    • Chadwick, K.1    Shojaei, F.2    Gallacher, L.3    Bhatia, M.4
  • 80
    • 0037438589 scopus 로고    scopus 로고
    • Common mechanism for oncogenic activation of MLL by forkhead family proteins
    • 10.1182/blood-2002-06-1785 12393557
    • So CW Cleary ML Common mechanism for oncogenic activation of MLL by forkhead family proteins. Blood 2003, 101:633-639 10.1182/ blood-2002-06-1785 12393557
    • (2003) Blood , vol.101 , pp. 633-639
    • So, C.W.1    Cleary, M.L.2
  • 81
    • 0030913114 scopus 로고    scopus 로고
    • GABP cooperates with c-Myb and C/EBP to activate the neutrophil elastase promoter
    • 9192779
    • Nuchprayoon I Simkevich CP Luo M Friedman AD Rosmarin AG GABP cooperates with c-Myb and C/EBP to activate the neutrophil elastase promoter. Blood 1997, 89:4546-4554 9192779
    • (1997) Blood , vol.89 , pp. 4546-4554
    • Nuchprayoon, I.1    Simkevich, C.P.2    Luo, M.3    Friedman, A.D.4    Rosmarin, A.G.5
  • 82
    • 0032529704 scopus 로고    scopus 로고
    • The chimeric E2A-HLF transcription factor abrogates p53-induced apoptosis in myeloid leukemia cells
    • 9694729
    • Altura RA Inukai T Ashmun RA Zambetti GP Roussel MF Look AT The chimeric E2A-HLF transcription factor abrogates p53-induced apoptosis in myeloid leukemia cells. Blood 1998, 92:1397-1405 9694729
    • (1998) Blood , vol.92 , pp. 1397-1405
    • Altura, R.A.1    Inukai, T.2    Ashmun, R.A.3    Zambetti, G.P.4    Roussel, M.F.5    Look, A.T.6
  • 83
    • 0030754990 scopus 로고    scopus 로고
    • Analysis of E-box DNA binding during myeloid differentiation reveals complexes that contain Mad but not Max
    • 1218531 9224632
    • Ryan KM Birnie GD Analysis of E-box DNA binding during myeloid differentiation reveals complexes that contain Mad but not Max. Biochem J 1997, 325:79-85 1218531 9224632
    • (1997) Biochem J , vol.325 , pp. 79-85
    • Ryan, K.M.1    Birnie, G.D.2
  • 85
    • 0036566050 scopus 로고    scopus 로고
    • Spi-B can functionally replace PU.1 in myeloid but not lymphoid development
    • 125373 11980719 10.1093/emboj/21.9.2220
    • Dahl R Ramirez-Bergeron DL Rao S Simon MC Spi-B can functionally replace PU.1 in myeloid but not lymphoid development. EMBO J 2002, 21:2220-2230 125373 11980719 10.1093/emboj/21.9.2220
    • (2002) EMBO J , vol.21 , pp. 2220-2230
    • Dahl, R.1    Ramirez-Bergeron, D.L.2    Rao, S.3    Simon, M.C.4
  • 86
    • 33746352114 scopus 로고    scopus 로고
    • Vitamin d receptor signaling of monocytic differentiation in human leukemia cells: Role of MAPK pathways in transcription factor activation
    • 10.2174/156802606777864935 16848740
    • Studzinski GP Garay E Patel R Zhang J Wang X Vitamin d receptor signaling of monocytic differentiation in human leukemia cells: Role of MAPK pathways in transcription factor activation. Curr Top Med Chem 2006, 6:1267-1271 10.2174/156802606777864935 16848740
    • (2006) Curr Top Med Chem , vol.6 , pp. 1267-1271
    • Studzinski, G.P.1    Garay, E.2    Patel, R.3    Zhang, J.4    Wang, X.5
  • 87
    • 0029943308 scopus 로고    scopus 로고
    • Octamer binding factors and their coactivator can activate the murine PU.1 (spi-1) promoter
    • 10.1074/jbc.271.26.15743 8663022
    • Chen H Zhang P Radomska HS Hetherington CJ Zhang DE Tenen DG Octamer binding factors and their coactivator can activate the murine PU.1 (spi-1) promoter. J Biol Chem 1996, 271:15743-15752 10.1074/ jbc.271.26.15743 8663022
    • (1996) J Biol Chem , vol.271 , pp. 15743-15752
    • Chen, H.1    Zhang, P.2    Radomska, H.S.3    Hetherington, C.J.4    Zhang, D.E.5    Tenen, D.G.6
  • 88
    • 0037315894 scopus 로고    scopus 로고
    • Disruption of differentiation in human cancer: AML shows the way
    • 10.1038/nrc989 12563308
    • Tenen DG Disruption of differentiation in human cancer: AML shows the way. Nat Rev Cancer 2003, 3:89-101 10.1038/nrc989 12563308
    • (2003) Nat Rev Cancer , vol.3 , pp. 89-101
    • Tenen, D.G.1
  • 89
    • 0037071397 scopus 로고    scopus 로고
    • Transcriptional regulation of granulocyte and monocyte development
    • 10.1038/sj.onc.1205324 12032776
    • Friedman AD Transcriptional regulation of granulocyte and monocyte development. Oncogene 2002, 21:3377-3390 10.1038/sj.onc.1205324 12032776
    • (2002) Oncogene , vol.21 , pp. 3377-3390
    • Friedman, A.D.1
  • 90
    • 0034694023 scopus 로고    scopus 로고
    • Hematopoietic expression of HOXB4 is regulated in normal and leukemic stem cells through transcriptional activation of the HOXB4 promoter by upstream stimulating factor (USF)-1 and USF-2
    • 10.1084/jem.192.10.1479 11085749
    • Giannola DM Shlomchik WD Jegathesan M Liebowitz D Abrams CS Kadesch T Dancis A Emerson SG Hematopoietic expression of HOXB4 is regulated in normal and leukemic stem cells through transcriptional activation of the HOXB4 promoter by upstream stimulating factor (USF)-1 and USF-2. J Exp Med 2000, 192:1479-1490 10.1084/jem.192.10.1479 11085749
    • (2000) J Exp Med , vol.192 , pp. 1479-1490
    • Giannola, D.M.1    Shlomchik, W.D.2    Jegathesan, M.3    Liebowitz, D.4    Abrams, C.S.5    Kadesch, T.6    Dancis, A.7    Emerson, S.G.8
  • 91
    • 27144491599 scopus 로고    scopus 로고
    • c-Myc rapidly induces acute myeloid leukemia in mice without evidence of lymphoma-associated antiapoptotic mutations
    • 10.1182/blood-2005-02-0734 15972450
    • Luo H Li Q O'Neal J Kreisel F Le Beau MM Tomasson MH c-Myc rapidly induces acute myeloid leukemia in mice without evidence of lymphoma-associated antiapoptotic mutations. Blood 2005, 106:2452-2461 10.1182/blood-2005-02-0734 15972450
    • (2005) Blood , vol.106 , pp. 2452-2461
    • Luo, H.1    Li, Q.2    O'Neal, J.3    Kreisel, F.4    Le Beau, M.M.5    Tomasson, M.H.6


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