GOlorize: A Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring

Bioinformatics

Volumn 23, Issue 3, 2007, Pages 394-396

  Garcia, Olivier ^a   Saveanu, Cosmin ^a   Cline, Melissa ^a   Fromont Racine, Micheline ^a   Jacquier, Alain ^a   Schwikowski, Benno ^a   Aittokallio, Tero ^a  

^a INSTITUT PASTEUR   (France)

Author keywords

[No Author keywords available]

Indexed keywords

RHO FACTOR;

ARTICLE; BIOINFORMATICS; CHROMATIN ASSEMBLY AND DISASSEMBLY; COMPUTER INTERFACE; COMPUTER PROGRAM; GENETIC ALGORITHM; INFORMATION PROCESSING; PRIORITY JOURNAL; PROCESS OPTIMIZATION; PROTEIN DATABASE; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; SIGNAL TRANSDUCTION;

EID: 33847274309     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl605     Document Type: Article

References (5)

1. Fruchterman,T.M.J. and Reingold,E.M. (1991) Graph drawing by force-directed placement. Software - Practice and Experience, 21, 1129-1164.
2. Guldener,U. et al. (2006) MPact: The MIPS protein interaction resource on yeast. Nucleic Acids Res., 34, D436-D441.
3. Maere,S. et al. (2005) BiNGO: A Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks. Bioinformatics, 21, 3448-3449.
4. Shannon,P. et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res., 13, 2498-2504.
5. Stark,C. et al. (2006) BioGRID: A general repository for interaction datasets. Nucleic Acids Res., 34, D535-D539.