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Volumn 121, Issue 4, 2008, Pages 365-376

A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera

Author keywords

Boschniakia; Holoparasitic plants; Orobanchaceae; Orobanche; Phylogeny; rps2 gene

Indexed keywords

PLANT DNA;

EID: 46749102061     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-008-0169-5     Document Type: Article
Times cited : (43)

References (47)
  • 1
    • 13444311033 scopus 로고    scopus 로고
    • Piecing together the "new" Plantaginaceae
    • Albach DC, Meudt HM, Oxelman B (2005) Piecing together the "new" Plantaginaceae. Am J Bot 92:297-315
    • (2005) Am J Bot , vol.92 , pp. 297-315
    • Albach, D.C.1    Meudt, H.M.2    Oxelman, B.3
  • 4
    • 33746141359 scopus 로고    scopus 로고
    • Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome a
    • Bennett JR, Mathews S (2006) Phylogeny of the parasitic plant family Orobanchaceae inferred from phytochrome A. Am J Bot 93:1039-1051
    • (2006) Am J Bot , vol.93 , pp. 1039-1051
    • Bennett, J.R.1    Mathews, S.2
  • 5
    • 0036036258 scopus 로고    scopus 로고
    • Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels
    • Bremer B, Bremer K, Heidari N, Erixon P, Olmstead RG, Anderberg AA, Källersjö M, Barkhordarian E (2002) Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels. Mol Phylogen Evol 24:264-301
    • (2002) Mol Phylogen Evol , vol.24 , pp. 264-301
    • Bremer, B.1    Bremer, K.2    Heidari, N.3    Erixon, P.4    Olmstead, R.G.5    Anderberg, A.A.6    Källersjö, M.7    Barkhordarian, E.8
  • 8
    • 0025712978 scopus 로고
    • Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
    • dePamphilis CW, Palmer JD (1990) Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. Nature 348:337-339
    • (1990) Nature , vol.348 , pp. 337-339
    • Depamphilis, C.W.1    Palmer, J.D.2
  • 9
    • 0030738482 scopus 로고    scopus 로고
    • Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: Many losses of photosynthesis and complex patterns of rate variation
    • dePamphilis CW, Young ND, Wolfe AD (1997) Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: many losses of photosynthesis and complex patterns of rate variation. Proc Natl Acad Sci USA 94:7367-7372
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 7367-7372
    • Depamphilis, C.W.1    Young, N.D.2    Wolfe, A.D.3
  • 10
    • 33344465800 scopus 로고    scopus 로고
    • Relaxed phylogenetics and dating with confidence
    • doi: 10.1371/journal.pbio.0040088
    • Drummond AJ, Ho SYW, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Biol 4(5):e88 doi: 10.1371/journal.pbio.0040088
    • (2006) PLoS Biol , vol.4 , Issue.5
    • Drummond, A.J.1    Ho, S.Y.W.2    Phillips, M.J.3    Rambaut, A.4
  • 11
    • 1842427217 scopus 로고    scopus 로고
    • Extensive intraindividual variation in plastid rDNA sequences from the holoparasite Cynomorium coccineum (Cynomoriaceae)
    • García MA, Nicholson EH, Nickrent DL (2004) Extensive intraindividual variation in plastid rDNA sequences from the holoparasite Cynomorium coccineum (Cynomoriaceae). J Mol Evol 58:322-332
    • (2004) J Mol Evol , vol.58 , pp. 322-332
    • García, M.A.1    Nicholson, E.H.2    Nickrent, D.L.3
  • 12
    • 0842347269 scopus 로고
    • New names in Phanerogamae 6
    • Holub J (1977) New names in Phanerogamae 6. Folia Geobot Phytotax 12:417-432
    • (1977) Folia Geobot Phytotax , vol.12 , pp. 417-432
    • Holub, J.1
  • 13
    • 0342871405 scopus 로고
    • Some taxonomic and nomenclatural changes within Orobanche s. l. (Orobanchaceae)
    • Holub J (1990) Some taxonomic and nomenclatural changes within Orobanche s. l. (Orobanchaceae). Preslia 62:193-198
    • (1990) Preslia , vol.62 , pp. 193-198
    • Holub, J.1
  • 14
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference of phylogeny
    • Huelsenbeck JP, Larget B, Miller RE, Ronquist F (2002) Potential applications and pitfalls of Bayesian inference of phylogeny. Syst Biol 51:673-688
    • (2002) Syst Biol , vol.51 , pp. 673-688
    • Huelsenbeck, J.P.1    Larget, B.2    Miller, R.E.3    Ronquist, F.4
  • 15
    • 4444326869 scopus 로고    scopus 로고
    • Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences
    • Manen JF, Habashi C, Jeanmonod D, Park JM, Schneeweiss GM (2004) Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences. Mol Phylogen Evol 33:482-500
    • (2004) Mol Phylogen Evol , vol.33 , pp. 482-500
    • Manen, J.F.1    Habashi, C.2    Jeanmonod, D.3    Park, J.M.4    Schneeweiss, G.M.5
  • 16
    • 0026052010 scopus 로고
    • Plastid translation and transcription genes in a non-photosynthetic plant: Intact, missing and pseudo genes
    • Morden CW, Wolfe KH, dePamphilis CW, Palmer JD (1991) Plastid translation and transcription genes in a non-photosynthetic plant: intact, missing and pseudo genes. EMBO J 10:3281-3288
    • (1991) EMBO J , vol.10 , pp. 3281-3288
    • Morden, C.W.1    Wolfe, K.H.2    Depamphilis, C.W.3    Palmer, J.D.4
  • 19
    • 0001003611 scopus 로고
    • Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences
    • Olmstead RG, Reeves PA (1995) Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences. Ann Miss Bot Gard 82:176-193
    • (1995) Ann Miss Bot Gard , vol.82 , pp. 176-193
    • Olmstead, R.G.1    Reeves, P.A.2
  • 22
    • 33847763642 scopus 로고    scopus 로고
    • Phylogeny and biogeography of isophyllous species of Campanula (Campanulaceae) in the Mediterranean area
    • Park JM, Kovačić S, Liber Z, Eddie WMM, Schneeweiss GM (2006) Phylogeny and biogeography of isophyllous species of Campanula (Campanulaceae) in the Mediterranean area. Syst Bot 31:862-880
    • (2006) Syst Bot , vol.31 , pp. 862-880
    • Park, J.M.1    Kovačić, S.2    Liber, Z.3    Eddie, W.M.M.4    Schneeweiss, G.M.5
  • 23
    • 34249048361 scopus 로고    scopus 로고
    • Horizontal gene transfer of a plastid gene in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae)
    • Park JM, Manen JF, Schneeweiss GM (2007a) Horizontal gene transfer of a plastid gene in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae). Mol Phylogen Evol 43:974-985
    • (2007) Mol Phylogen Evol , vol.43 , pp. 974-985
    • Park, J.M.1    Manen, J.F.2    Schneeweiss, G.M.3
  • 24
    • 33845662269 scopus 로고    scopus 로고
    • Diversity and evolution of Ty1-copia and Ty3-gypsy retroelements in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae)
    • Park JM, Schneeweiss GM, Weiss-Schneeweiss H (2007b) Diversity and evolution of Ty1-copia and Ty3-gypsy retroelements in the non-photosynthetic flowering plants Orobanche and Phelipanche (Orobanchaceae). Gene 387:75-86
    • (2007) Gene , vol.387 , pp. 75-86
    • Park, J.M.1    Schneeweiss, G.M.2    Weiss-Schneeweiss, H.3
  • 25
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 26
    • 23944512581 scopus 로고    scopus 로고
    • The evolution and expression of RBCL in holoparasitic sister-genera Harveya and Hyobanche (Orobanchaceae)
    • Randle CP, Wolfe AD (2005) The evolution and expression of RBCL in holoparasitic sister-genera Harveya and Hyobanche (Orobanchaceae). Am J Bot 92:1575-1585
    • (2005) Am J Bot , vol.92 , pp. 1575-1585
    • Randle, C.P.1    Wolfe, A.D.2
  • 27
    • 21244439484 scopus 로고    scopus 로고
    • Phylogeny and the evolution of floral diversity in Pedicularis (Orobanchaceae)
    • Ree R (2005) Phylogeny and the evolution of floral diversity in Pedicularis (Orobanchaceae). Int J Plant Sci 166:595-613
    • (2005) Int J Plant Sci , vol.166 , pp. 595-613
    • Ree, R.1
  • 28
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 29
    • 0842266256 scopus 로고    scopus 로고
    • Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS-sequences
    • Schneeweiss GM, Colwell A, Park JM, Jang CG, Stuessy TF (2004a) Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS-sequences. Mol Phylogen Evol 30:465-478
    • (2004) Mol Phylogen Evol , vol.30 , pp. 465-478
    • Schneeweiss, G.M.1    Colwell, A.2    Park, J.M.3    Jang, C.G.4    Stuessy, T.F.5
  • 30
    • 1642283660 scopus 로고    scopus 로고
    • Chromosome numbers and karyotype evolution of holoparasitic Orobanche (Orobanchaceae) and related genera
    • Schneeweiss GM, Palomeque T, Colwell AE, Weiss-Schneeweiss H (2004b) Chromosome numbers and karyotype evolution of holoparasitic Orobanche (Orobanchaceae) and related genera. Am J Bot 91:439-448
    • (2004) Am J Bot , vol.91 , pp. 439-448
    • Schneeweiss, G.M.1    Palomeque, T.2    Colwell, A.E.3    Weiss-Schneeweiss, H.4
  • 31
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro B, Rambaut A, Drummond AJ (2006) Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol Biol Evol 23:7-9
    • (2006) Mol Biol Evol , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 33
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol Biol Evol 16:1114-1116
    • (1999) Mol Biol Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 37
    • 0036480568 scopus 로고    scopus 로고
    • Pharmacognostical studies of cistanchis herba (III). Phylogenetic relationship of the Cistanche plants based on plastid rps2 gene and rpl16-rpl14 intergenic spacer sequences
    • Tomari N, Ishizuka Y, Moriya A, Kojima S, Deyama T, Mizukami H, Tu P (2002) Pharmacognostical studies of cistanchis herba (III). Phylogenetic relationship of the Cistanche plants based on plastid rps2 gene and rpl16-rpl14 intergenic spacer sequences. Biol Pharmaceut Bull 25:218-222
    • (2002) Biol Pharmaceut Bull , vol.25 , pp. 218-222
    • Tomari, N.1    Ishizuka, Y.2    Moriya, A.3    Kojima, S.4    Deyama, T.5    Mizukami, H.6    Tu, P.7
  • 38
    • 0442278078 scopus 로고    scopus 로고
    • Pharmacognostical studies of cistanchis herba (IV). Phylogenetic relationship of the Cistanche plants based on plastid rps2 gene and rpl16-rpl14 intergenic spacer sequences
    • Tomari N, Ishizuka Y, Moriya A, Kojima S, Deyama T, Coskun M, Tu P, Mizukami H (2003) Pharmacognostical studies of cistanchis herba (IV). Phylogenetic relationship of the Cistanche plants based on plastid rps2 gene and rpl16-rpl14 intergenic spacer sequences. J Nat Med 57:233-237
    • (2003) J Nat Med , vol.57 , pp. 233-237
    • Tomari, N.1    Ishizuka, Y.2    Moriya, A.3    Kojima, S.4    Deyama, T.5    Coskun, M.6    Tu, P.7    Mizukami, H.8
  • 40
    • 31944437603 scopus 로고    scopus 로고
    • Genome size evolution in holoparasitic Orobanche (Orobanchaceae) and related genera
    • Weiss-Schneeweiss H, Greilhuber J, Schneeweiss GM (2006) Genome size evolution in holoparasitic Orobanche (Orobanchaceae) and related genera. Am J Bot 93:148-156
    • (2006) Am J Bot , vol.93 , pp. 148-156
    • Weiss-Schneeweiss, H.1    Greilhuber, J.2    Schneeweiss, G.M.3
  • 41
    • 0031684776 scopus 로고    scopus 로고
    • The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic parasitic plants
    • Wolfe AD, dePamphilis CW (1998) The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic parasitic plants. Mol Biol Evol 15:1243-1248
    • (1998) Mol Biol Evol , vol.15 , pp. 1243-1248
    • Wolfe, A.D.1    Depamphilis, C.W.2
  • 42
    • 8844267682 scopus 로고    scopus 로고
    • Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: Implications for plant molecular systematics
    • Wolfe AD, Randle CP (2004) Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: implications for plant molecular systematics. Syst Bot 29:1011-1020
    • (2004) Syst Bot , vol.29 , pp. 1011-1020
    • Wolfe, A.D.1    Randle, C.P.2
  • 44
    • 0033636041 scopus 로고    scopus 로고
    • Purifying selection detected in the plastid gene matK and flanking ribozyme regions within a group II intron of nonphotosynthetic plants
    • Young ND, dePamphilis CW (2000) Purifying selection detected in the plastid gene matK and flanking ribozyme regions within a group II intron of nonphotosynthetic plants. Mol Biol Evol 17:1933-1941
    • (2000) Mol Biol Evol , vol.17 , pp. 1933-1941
    • Young, N.D.1    Depamphilis, C.W.2
  • 45
    • 17444409700 scopus 로고    scopus 로고
    • Rate variation in parasitic plants: Correlated and uncorrelated patterns among plastid genes of different function
    • doi: 10.1186/1471-2148-5-16
    • Young ND, dePamphilis CW (2005) Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function. BMC Evol Biol 5:16 doi: 10.1186/1471-2148-5-16
    • (2005) BMC Evol Biol , vol.5 , pp. 16
    • Young, N.D.1    DePamphilis, C.W.2
  • 46
    • 0033387629 scopus 로고    scopus 로고
    • The evolution of parasitism in Scrophulariaceae/Orobanchaceae: Plastid gene sequences refute an evolutionary transition series
    • Young ND, Steiner KE, dePamphilis CW (1999) The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequences refute an evolutionary transition series. Ann Miss Bot Gard 86:876-893
    • (1999) Ann Miss Bot Gard , vol.86 , pp. 876-893
    • Young, N.D.1    Steiner, K.E.2    Depamphilis, C.W.3
  • 47
    • 39649096708 scopus 로고    scopus 로고
    • Evaluation of the models handling heterotachy in phylogenetic inference
    • doi: 10.1186/1471-2148-7-206
    • Zhou Y, Rodrigue N, Lartillot N, Philippe H (2007) Evaluation of the models handling heterotachy in phylogenetic inference. BMC Evol Biol 7:206 doi: 10.1186/1471-2148-7-206
    • (2007) BMC Evol Biol , vol.7 , pp. 206
    • Zhou, Y.1    Rodrigue, N.2    Lartillot, N.3    Philippe, H.4


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