Phylogeny and the evolution of floral diversity in Pedicularis (Orobanchaceae)

International Journal of Plant Sciences

Volumn 166, Issue 4, 2005, Pages 595-613

  Ree, Richard H ^a,b  

^a HARVARD UNIVERSITY   (United States)

^b FIELD MUSEUM OF NATURAL HISTORY   (United States)

Author keywords

Bayesian analysis; Biodiversity hotspot; China; Constraint; Floral evolution; Homoplasy; Orobanchaceae; Pedicularis; Phylogeny; Stochastic mapping

Indexed keywords

EVOLUTION; PHYLOGENY;

OROBANCHACEAE; PEDICULARIS;

EID: 21244439484     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/430191     Document Type: Article

References (78)

1. Akaike H 1974 A new look at the statistical model identification. IEEE Trans Automatic Control 19:716-723.
2. Alfaro ME, S Zoller, F Lutzoni 2003 Bayes or bootstrap? a simulation study comparing the performance of Bayesian Markov Chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Mol Biol Evol 20:255-266.
3. Armbruster WS 1996 Evolution of floral morphology and function: an integrative approach to adaptation, constraint, and compromise in Dalechampia (Euphorbiaceae). Pages 241-272 in DG Lloyd, SCH Barrett, eds. Floral biology: studies in floral evolution in animal-pollinated plants. Chapman & Hall, New York.
4. Armstrong JA, AW Douglas 1989 The ontogenetic basis for corolla aestivation in Scrophulariaceae. Bull Torrey Bot Club 116:378-389.
5. Bailey CD, T Carr, SA Harris, CE Hughes 2003 Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes. Mol Phylogenet Evol 29:435-455.
6. Baum DA, KJ Sytsma, PC Hoch 1994 A phylogenetic analysis of Epilobium (Onagraceae) based on nuclear ribosomal DNA sequences. Syst Bot 19:363-388.
7. Bentham G 1835 Scrophularineae Indicae. J. Ridgway, London.
8. _ 1846 Scrophulariaceae. Parisiis, n.p.
9. Bonati G 1918 Le genre Pedicularis L. Morphologie, classification, distribution géographique, évolution et hybridation. PhD thesis. Université de Nancy.
10. Boufford DE, PP Van Dijk 2000 South-central China. Pages 339-351 in RA Mittermeier, N Myers, CG Mittermeier, eds. Hotspots: earth's biologically richest and most endangered terrestrial ecoregions. CEMEX, Mexico City.
11. Bunge A 1846 Ueber Pedicularis comosa L. und die mit ihr verwandten Arten. Bull Phys Math Acad Sci St Petersburg 1:369-384.
12. dePamphilis CW, ND Young, AD Wolfe 1997 Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: many losses of photosynthesis and complex patterns of rate variation. Proc Natl Acad Sci USA 94:7367-7372.
13. Doyle JJ, JL Doyle 1990 Isolation of plant DNA from fresh tissue. Focus 12:13-15.
14. Eriksen B, U Molau, M Svensson 1993 Reproductive strategies in two arctic Pedicularis species (Scrophulariaceae). Ecography 16:154-166.
15. Ewing B, P Green 1998 Basecalling of automated sequencer traces using phred II: error probabilities. Genome Res 8:186-194.
16. Ewing B, L Hillier, M Wendl, P Green 1998 Basecalling of automated sequencer traces using phred I: accuracy assessment. Genome Res 8:175-185.
17. Felsenstein J 1978 Cases in which parsimony or compatibility methods will be positively misleading. Syst Zool 27:401-410.
18. Gordon D, C Abajian, P Green 1998 Consed: a graphical tool for sequence finishing. Genome Res 8:195-202.
19. Holmgren PK, NH Holmgren, LC Barnett 1990 Index herbariorum. I. The herbaria of the world. 8th ed. New York Botanical Garden, Bronx.
20. Hong D 1983 The distribution of Scrophulariaceae in the Holarctic with special reference to the floristic relationships between eastern Asia and eastern North America. Ann Mo Bot Gard 70:701-713.
21. Huelsenbeck J, R Nielsen, J Bollback 2003 Stochastic mapping of morphological characters. Syst Biol 52:131-158.
22. Huelsenbeck JP, FR Ronquist 2001 MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:745-755.
23. Hurusawa I 1947 Genus Pedicularis Linnaeus. J Jpn Bot 21:159-166.
24. _ 1948 Genus Pedicularis Linnaeus. J Jpn Bot 22:11-16, 70-76, 178-185.
25. _ 1949 Genus Pedicularis Linnaeus. J Jpn Bot 23:20-24, 106-113.
26. Kaigorodova MS 1976 The ecology of flowering and pollination of three Pedicularis species in the upper reaches of rivers Sob and Yelets (Polar Urals). Bot Zh 61:726-730.
27. Kwak M 1977 Pollination ecology of five hemiparasitic large-flowered Rhinanthoideae with special reference to the pollination behaviors of nectar-thieving, short-tongued bumblebees. Acta Bot Neerl 26:97-108.
28. _ 1979 Effects of bumblebee visits on the seed set of Pedicularis, Rhinanthus, and Melampyrum (Scrophulariaceae) in the Netherlands. Acta Bot Neerl 28:177-195.
29. Li H 1948 A revision of the genus Pedicularis in China. I. Proc Acad Sci Phila 100:205-378.
30. _ 1949 A revision of the genus Pedicularis in China. II. Proc Acad Sci Phila 101:1-214.
31. _ 1951 Evolution in the flowers of Pedicularis. Evolution 5:158-164.
32. Limpricht W 1924 Studien über die Gattung Pedicularis. Repert Spec Nov 20:161-265.
33. Macior LW 1968 Pollination adaptation in Pedicularis canadensis. Am J Bot 55:1031-1035.
34. _ 1970 Pollination ecology of Pedicularis in Colorado. Am J Bot 57:716-728.
35. _ 1973 Pollination ecology of Pedicularis on Mount Rainier. Am J Bot 60:863-871.
36. _ 1975 The pollination ecology of Pedicularis (Scrophulariaceae) in the Yukon Territory. Am J Bot 62:1065-1072.
37. _ 1977 Pollination ecology of Pedicularis (Scrophulariaceae) in Sierra Nevada of California. Bull Torrey Bot Club 104:148-154.
38. _ 1982 Plant community and pollinator dynamics in the evolution of pollination mechanisms in Pedicularis (Scrophulariaceae). Pages 29-45 in JA Armstrong, JM Powell, AJ Richards, eds. Pollination and evolution. Royal Botanic Gardens, Sydney.
39. _ 1983 The pollination dynamics of sympatric species of Pedicularis (Scrophulariaceae). Am J Bot 70:844-853.
40. _ 1986a Floral resource sharing by bumblebees and hummingbirds in Pedicularis (Scrophulariaceae) pollination. Bull Torrey Bot Club 113:101-109.
41. _ 1986b Pollination ecology and endemic adaptation of Pedicularis howellii Gray (Scrophulariaceae). Plant Species Biol 1:163-172.
42. _ 1986c Pollination ecology and endemism of Pedicularis pulchella Pennell (Scrophulariaceae). Plant Species Biol 1:173-180.
43. _ 1988 A preliminary study of the pollination ecology of Pedicularis (Scrophulariaceae) in Japan. Plant Species Biol 3:61-66.
44. _ 1990 Pollination ecology of Pedicularis punctata Decne. (Scrophulariaceae) in the Kashmir Himalaya. Plant Species Biol 5:215-223.
45. _ 1993 Pollination ecology of Pedicularis palustris L. (Scrophulariaceae) in North America. Plant Species Biol 8:35-44.
46. _ 1995a Pollination ecology of Pedicularis in the Teton Mountain region. Plant Species Biol 10:77-82.
47. _ 1995b Pollination ecology of Pedicularis parryi ssp. purpurea (Parry) Carr (Scrophulariaceae). Plant Species Biol 10:163-168.
48. _ 1996 Pollination ecology of Pedicularis bracteosa in the montane-subalpine ecotone. Plant Species Biol 11:165-171.
49. Macior LW, KS Sarvesh 1991 Pollination ecology of Pedicularis megalantha D. Don (Scrophulariaceae) in the Himachal Himalaya. Plant Species Biol 6:75-81.
50. Macior LW, Y Tang 1997 A preliminary study of the pollination ecology of Pedicularis in the Chinese Himalaya. Plant Species Biol 12:1-8.
51. Maximowicz CJ 1888 Diagnoses plantarum novarum Asiaticarum. Bull Acad Sci St Petersburg 32:427-629.
52. Meyers N 1988 Threatened biotas: "hot spots" in tropical forests. Environmentalist 8:187-208.
53. Mosquin T, JEH Martin 1967 Observations on the pollination biology of plants on Melville Island, NWT, Canada. Can Field-Nat 81:201-205.
54. Nielsen R 2002 Mapping mutations on phylogenies. Syst Biol 51:729-739.
55. Nylander JAA 2002 MrModeltest, version 1.1b. Department of Systematic Zoology, Uppsala University, Sweden.
56. Olmstead RG, CW dePamphilis, AD Wolfe, ND Young, WJ Elisons, PA Reeves 2001 Disintegration of the Scrophulariaceae. Am J Bot 88:348-361.
57. Pennell FW 1935 The Scrophulariaceae of eastern temperate North America. Monographs 1. Academy of Natural Sciences, Philadelphia.
58. Prain D 1890 The species of Pedicularis of the Indian Empire and its frontiers. Bengal Secretariat, Calcutta.
59. Schulz TR, GA Churchill 1999 The role of subjectivity in reconstructing ancestral states: a Bayesian approach to unknown rates, states, and transformation asymmetries. Syst Biol 48:6651-6664.
60. Sprague E 1962 Pollination and evolution in Pedicularis (Scrophulariaceae). Aliso 5:181-209.
61. Stephenson AG, RI Bertin 1983 Male competition, female choice, and sexual selection in plants. Pages 110-149 in L Real, ed. Pollination biology. Academic Press, Orlando, FL.
62. Steven C 1823 Monographia Pedicularis. Mem Soc Nat Moscou 6:1-60.
63. Suzuki Y, GV Glazko, M Nei 2002 Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proc Natl Acad Sci USA 99:16138-16143.
64. Thompson JD, TJ Gibson, PFF Jeanmougin, DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882.
65. Thompson JD, DG Higgins, TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
66. Tsoong P 1955 A new system for the genus Pedicularis. Acta Phytotaxon Sin 4:103-147.
67. _ 1956 A new system for the genus Pedicularis. Acta Phytotaxon Sin 5:41-73, 239-278.
68. _ 1963 Pedicularis. Flora Reipublicae Popularis Sinicae 68:1-378.
69. von Wettstein R 1897 Scrophulariaceae. Pages 293-299 in A Engler, K Prantl, eds. Die natürlichen Pflanzenfamilien. Engelmann, Leipzig.
70. White TJ, T Bruns, S Lee, J Taylor 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pages 315-322 in M Innis, D Gelfand, J Sninsky, TJ White, eds. PCR protocols: a guide to methods and applications. Academic Press, San Diego, CA.
71. Williams JB, GO Batzli 1982 Pollination and dispersion of five species of Lousewort (Pedicularis) near Atkasook, Alaska, U.S.A. Arct AIp Res 14:59-74.
72. Williams PH 1996 Mapping variations in the strength and breadth of biogeographic transition zones using species turnover. Proc R Soc Lond B 263:579-588.
73. Wilson EO 1992 The diversity of life. Belknap, Cambridge, MA.
74. Yamazaki T 1988 A revision of the genus Pedicularis in Nepal. Pages 91-159 in H Ohba, SB Malla, eds. The Himalayan plants. Vol 1. University Museum, University of Tokyo, Tokyo.
75. _ 1993 Pedicularis L. Pages 364-371 in K Iwatsuki, T Yamazaki, DE Boufford, H Ohba, eds. Flora of Japan. Vol IIIa. Angiospermae, Dicotyledoneae, Sympetalae (a). Kodansha, Tokyo.
76. Yang FS, XQ Wang, DY Hong 2003 Unexpected high divergence in nrDNA ITS and extensive parallelism in floral morphology of Pedicularis (Orobanchaceae). Plant Syst Evol 240:91-105.
77. Yang H, NH Holmgren, RR Mill 1998 Pedicularis. Pages 97-209 in CY Wu, PH Raven, eds. Flora of China. Vol 18. Missouri Botanical Garden, St. Louis, MO.
78. Young ND, KE Steiner, CW dePamphilis 1999 The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequences refute an evolutionary transition series. Ann Mo Bot Gard 86:876-893.