Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences

Molecular Phylogenetics and Evolution

Volumn 33, Issue 2, 2004, Pages 482-500

  Manen, Jean François ^a   Habashi, Christine ^a   Jeanmonod, Daniel ^a   Park, Jeong Mi ^b   Schneeweiss, Gerald M ^b  

^a CH 1292 Chambesy/Geneve Switzerland ^*  (Switzerland)

^b UNIVERSITY OF VIENNA   (Austria)

Author keywords

Evolution of host range; Orobanchaceae; Orobanche; Phylogeny; Pseudogene; rbcL

Indexed keywords

RBCL PROTEIN, PLASTID; RIBULOSEBISPHOSPHATE CARBOXYLASE;

ARTICLE; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; HOST PARASITE INTERACTION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OROBANCHE; PHYLOGENY; PLASTID; PSEUDOGENE; SEQUENCE ALIGNMENT;

BASE SEQUENCE; EVOLUTION, MOLECULAR; HOST-PARASITE RELATIONS; MOLECULAR SEQUENCE DATA; OROBANCHE; PHYLOGENY; PLASTIDS; PSEUDOGENES; RIBULOSE-BISPHOSPHATE CARBOXYLASE; SEQUENCE ALIGNMENT; VARIATION (GENETICS);

BOSCHNIAKIA; CISTANCHE; OROBANCHACEAE; OROBANCHE; OROBANCHE COERULESCENS;

EID: 4444326869     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.06.010     Document Type: Article

References (54)

1. G. Beck-Mannagetta Monographie der Gattung Orobanche 1890 Theodor Fischer Cassel
2. G. Beck-Mannagetta IV. 261. Orobanchaceae A. Engler Das Pflanzenreich. Regni Vegetabilis Conspectus 1930 Wilhelm Engelmann Leipzig 1 348
3. H. Benharrat, P. Delavault, C. Theodet, C. Figureau, and P. Thalouarn rbcL plastid pseudogene as a tool for Orobanche (Subsection Minores) identification Plant Biol. 2 2000 34 39
4. U. Bergthorsson, K.L. Adams, B. Thomason, and J.D. Palmer Widespread horizontal transfer of mitochondrial genes in flowering plants Nature 424 2003 197 201
5. H.J. Bouwmeester, R. Matusova, S. Zhongkui, and M.H. Beale Secondary metabolite signalling in host-parasitic plant interactions Curr. Opin. Plant Biol. 6 2003 358 364
6. L. Carlón, G. Gómez Casares, M. Laínz, G. Moreno Moral, and Ó. Sánchez Pedraja A propósito de algunas Orobanche (Orobanchaceae) del noroeste peninsular y de su tratamiento en Flora Iberica vol. XIV (2001) Doc. Jard. Bot. Atlantico 1 2003 1 44
7. Colwell, A.E.L., 1994. Genome evolution in a non-photosynthetic plant. Ph.D. thesis, Washington University, St. Louis
8. R. Cronn, and J. Wendel Cryptic trysts, genomic mergers, and plant speciation New Phytol. 161 2004 133 142
9. C.W. dePamphilis, and J.D. Palmer Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant Nature 349 1990 337 339
10. C.W. dePamphilis, N.D. Young, and A.D. Wolfe Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: many losses of photosynthesis and complex patterns of rate variation Proc. Natl. Acad. Sci. USA 94 1997 7367 7372
11. P. Delavault, and P. Thalouran The obligate root parasite Orobanche cumana exhibits several rbcL sequences Gene 297 2002 85 92
12. P. Delavault, V. Sakanyan, and P. Thalouarn Divergent evolution of two plastid genes, rbcL and atpB, in a non-photosynthetic parasitic plant Plant Mol. Biol. 29 1995 1071 1079
13. E.M. Estabrook, and J.I. Yoder Plantâ€"plant communications: rhizosphere signaling between parasitic angiosperms and their hosts Plant Physiol. 116 1998 1 7
14. S. Gustincich, G. Manfioletti, G. Del Sal, C. Schneider, and P. Carninci A fast method for high-quality genomic DNA extraction from whole human blood Biotechniques 11 1991 298 302
15. J. Holub New names in Phanerogamae 6. Folia Geobot Phytotax 12 1977 417 432
16. J. Holub Some taxonomic and nomenclatural changes within Orobanche s. l. (Orobanchaceae) Preslia 62 1990 193 198
17. S.A. Kelchner The evolution of non-coding chloroplast DNA and its implication in plant systematics Ann. Mo. Bot. Gard. 87 2000 482 498
18. J. Leebens-Mack, and C. dePamphilis Power analysis of tests for loss of selective constraint in cave grayfish and nonphotosynthetic plant lineages Mol. Biol. Evol. 19 2002 1292 1302
19. Maddison, W.P., Maddison, D.R., 2003. Mesquite: a modular system for evolutionary analysis. Version 1.0. Available from: 〈http:// mesquiteproject.org〉
20. W. Martin, and R.G. Herrmann Gene transfer from the organelles to the nucleus: how much, what happens, and why? Plant Physiol. 118 1998 9 17
21. C.W. Morden, K.H. Wolfe, C.W. dePamphilis, and J.D. Palmer Plastid translation and transcription genes in a non-photosynthetic plant: intact, missing and pseudo gene EMBO J. 10 1991 3281 3288
22. J.A.A. Nylander, F. Ronquist, J.P. Huelsenbeck, and J.L. Nieves-Aldrey Bayesian phylogenetic analysis of combined data Syst. Biol. 53 2004 47 67
23. R.G. Olmstead, C.W. dePamphilis, A.D. Wolfe, N.D. Young, W.J. Elisons, and P.A. Reeves Disintegration of the Scrophulariaceae Am. J. Bot. 88 2001 348 361
24. B. Oxelman, M. Backlund, and B. Bremer Relationships of the Buddlejaceae s. l. investigated using parsimony jackknife and branch support analysis of chloroplast ndhF and rbcL sequence data Syst. Bot. 24 1999 164 182
25. C. Parker, and C.R. Riches Parasitic Weeds of the World: Biology and Control 1993 CAB International Wallingford
26. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
27. M.C. Press, and J.D. Graves Parasitic Plants 1995 Chapman & Hall London
28. A.J. Pujadas Salvà Orobanche flava Mart. ex F. W. Schultz (Orobanchaceae) en la Península Ibérica An. Jard. Bot. Madrid 60 2003 387 393
29. L.H. Rieseberg The role of hybridization in evolution: old wine in new skins Am. J. Bot. 82 1995 944 953
30. L.H. Rieseberg, J. Whitton, and C.R. Linder Molecular marker incongruence in plant hybrid zones and phylogenetic trees Acta Bot. Neerl. 45 1996 243 262
31. F. Ronquist, and J.P. Huelsenbeck MrBayes 3: Bayesian phylogenetic inference under mixed models Bioinformatics 19 2003 1572 1574
32. G.M. Schneeweiss, A. Colwell, J.-M. Park, C.-G. Jang, and T.F. Stuessy Phylogeny of holoparasitic Orobanche (Orobanchaceae) inferred from nuclear ITS sequences Mol. Phylogenet. Evol. 30 2004 465 478
33. G.M. Schneeweiss, T. Palomeque, A.E. Colwell, and H. Weiss-Schneeweiss Chromosome numbers and karyotype evolution in holoparasitic Orobanche (Orobanchaceae) and related genera Am. J. Bot. 91 2004 439 448
34. Soják J., 1972. Nomenklatorické poznámky (Phanerogamae). Časopis Národniho Muzea, odd. pří rodovědný 140, 127-134
35. T. Städler, and L.F. Delph Ancient mitochondrial haplotypes and evidence for intragenic recombination in a gynodioecious plant Proc. Natl. Acad. Sci. USA 99 2002 11731 11735
36. S. Stegemann, S. Hartmann, S. Ruf, and R. Bock High-frequency gene transfer from the chloroplast genome to the nucleus Proc. Natl. Acad. Sci. USA 100 2003 8828 8833
37. S.J. Steppan, B.L. Storz, and R.S. Hoffmann Nuclear DNA phylogeny of the squirrels (Mammalia: Rodentia) and the evolution of arboreality from c-myc and RAG1 Mol. Phylogenet. Evol. 30 2004 703 719
38. D.L. Swofford PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4 2003 Sinauer Associates Sunderland, MA
39. E.S. Teryokhin, G.V. Shibakina, N.B. Serafimovich, and T.I. Kravtsova Opredelitelj Sarasichovich Florii SSSR (Determinator of Broomrapes of the USSR Flora) 1993 Nauka Leningrad
40. P.E. Thorness, and E.R. Weber Escape and migration of nucleic acids between chloroplasts, mitochondria, and the nucleus Int. Rev. Cytol. 165 1996 207 234
41. H. Uhlich, J. Pusch, and K.-J. Barthel Die Sommerwurzarten Europas, Gattung Orobanche 1995 Westarp Wissenschaften Magdeburg, Germany
42. Wegmann, K., 1998. The Orobanche problem in tobacco. In: Wegmann, K., Musselman, L.J., Joel, D.M. (Eds.), Proceedings of the 4th International Orobanche Workshop Albena, Bulgaria, 23-26 September 1998. Institute for Wheat and Sunflower, General Toshevo, Bulgaria, pp. 13-17
43. R. Wettstein Scrophulariaceae A. Engler K. Prantl Die Natürlichen Pflanzenfamilien 4 (3b) 1891 Wilhelm Engelmann Leipzig 39 107
44. C.F. Wimpee, R. Morgan, and R.L. Wrobel Loss of transfer RNA from the plastid 16S-23S ribosomal RNA gene spacer in a parasitic plant Curr. Genet. 21 1992 417 422
45. A.D. Wolfe, and C.W. dePamphilis Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche Plant Mol. Biol. 33 1997 965 977
46. A.D. Wolfe, and C.W. dePamphilis The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic parasitic plants Mol. Biol. Evol. 15 1998 1243 1248
47. A.D. Wolfe, and C.P. Randle Relationships within and among species of the holoparasitic genus Hyobanche (Orobanchaceae) inferred from ISSR banding patterns and nucleotide sequences Syst. Bot. 26 2001 120 130
48. K.H. Wolfe, C.W. Morden, S.C. Ems, and J.D. Palmer Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: loss or accelerated sequence evolution of tRNA and ribosomal protein genes J. Mol. Evol. 35 1992 304 317
49. K.H. Wolfe, C.W. Morden, and J.D. Palmer Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant Proc. Natl. Acad. Sci. USA 89 1992 10648 10652
50. H. Won, and S.S. Renner Horizontal gene transfer from flowering plants to Gnetum Proc. Natl. Acad. Sci. USA 100 2003 10824 10829
51. Yang, Z. 2003. Phylogenetic Analysis by Maximum Likelihood. Version 3.13d. Program downloadable from ftp://abacus.gene.ucl.ac.uk/pub/paml/
52. Z. Yang, and J.P. Bielawski Statistical tests of adaptive molecular evolution Trends Ecol. Evol. 15 2000 496 502
53. Z. Yang, and R. Nielsen Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models Mol. Biol. Evol. 17 2000 32 43
54. N.D. Young, K.E. Steiner, and C.W. dePamphilis The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequence refute an evolutionary transition series Ann. Mo. Bot. Gard. 86 1999 876 893