Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels

Molecular Phylogenetics and Evolution

Volumn 24, Issue 2, 2002, Pages 274-301

  Bremer, Birgitta ^a,d   Bremer, Kåre ^a   Heidari, Nahid ^a   Erixon, Per ^a   Olmstead, Richard G ^b   Anderberg, Arne A ^c   Källersjö, Mari ^c   Barkhordarian, Edit ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b UNIVERSITY OF WASHINGTON   (United States)

^c SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

^d ROYAL SWEDISH ACADEMY OF SCIENCES   (Sweden)

Author keywords

Asterids; Coding DNA; matK; ndhF; Non coding DNA; Phylogeny; rbcL; rps16; trnT F; trnV atpE

Indexed keywords

ANGIOSPERMS; CHLOROPLASTS; DNA, INTERGENIC; DNA, PLANT; ENDORIBONUCLEASES; EXONS; GENETIC MARKERS; MODELS, BIOLOGICAL; NADH DEHYDROGENASE; NUCLEOTIDYLTRANSFERASES; PHYLOGENY; PLANT PROTEINS; RIBULOSE-BISPHOSPHATE CARBOXYLASE; RNA, TRANSFER; RNA, TRANSFER, MET;

ADOXACEAE; APIALES; AQUIFOLIALES; ASTERALES; ASTERIDS; CAMPANULIDS; CARDIOPTERIDACEAE; CORNALES; CYCLOCHEILACEAE; DIPSACALES; EBENACEAE; ERICALES; GARRYALES; GENTIANALES; LAMIALES; LAMIIDS; MAGNOLIOPHYTA; MONTINIACEAE; OROBANCHACEAE; PARACRYPHIACEAE; PELLICIERACEAE; PENTAPHYLACACEAE; PLOCOSPERMATACEAE; SCROPHULARIACEAE; SLADENIACEAE; SOLANALES; STYRACACEAE; TETRAMERISTACEAE;

EID: 0036036258     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1055-7903(02)00240-3     Document Type: Article

References (91)

1. Phylogenetic analysis of asterids based on sequences of four genes
2. Phylogenetic placement of the enigmatic angiosperm Hydrostachys
3. Carnivorous plants-phylogeny and structural evolution
4. Phylogenetic relationships in the Primulales inferred from cpDNA rbcL sequence data
5. Maesaceae, a new primuloid family in the order Ericales s.l.
6. Phylogenetic relationships in the order Ericales s.l.: Analyses of molecular data from five genes from the plastid and mitochondrial genomes
7. An ordinal classification for the families of flowering plants
8. Phylogeny of the Asteridae s. str. based on rbcL sequences, with particular reference to the Dipsacales
9. Diervillaceae and Linnaeaceae, two new families of caprifolioids
10. Phylogenetic relationships within the Gentianales based on ndhF and rbcL sequences, with particular reference to the Loganiaceae
11. Non-coding chloroplast DNA for plant molecular systematics at the infrageneric level
12. Phylogenetic studies within Rubiaceae and relationships to other families based on molecular data
13. rbcL Sequences support exclusion of Retzia, Desfontainia, and Nicodemia from the Gentianales
14. Subfamilial and tribal relationships in the Rubiaceae based on rbcL sequence data
15. A phylogenetic analysis of 100+ genera and 50+ families of euasterids based on morphological and molecular data
16. Evidence for a polyphyletic origin of the Labiatae
17. Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL
18. Phylogenetic relationships in the Campanulales based on rbcL sequences
19. Molecular evolution of chloroplast DNA sequences
20. A revised system of classification of angiosperms
21. General aspects of angiosperm evolution and macrosystematics
22. The questionable relationship of Montinia (Montiniaceae): Evidence from a floral ontogenetic and anatomical study
23. Restriction site mapping of the chloroplast DNA inverted repeat: A molecular phylogeny of the Asteridae
24. A phylogenetic analysis of Apocynaceae s. str., some related taxa in Gentianales: A multidisciplinary approach
25. Parsimony jackknifing outperforms neighbor-joining
26. Phylogenetic analysis and relationships in Hydrophyllaceae based on ndhF sequence data
27. The use of chloroplast DNA to resolve plant phylogenies: Non-coding versus rbcL sequences
28. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
29. Microstructural changes in noncoding chloroplast DNA: Interpretation, evolution, and utility of indels and inversions in basal angiosperm phylogenetic inference
30. The circumscription and systematic position of Carpodetaceae
31. Phylogeny of the Asterales sensu lato based on rbcL sequences with particular reference to the Goodeniaceae
32. Relationships in the Acanthaceae and related families as suggested by cladistic analysis of rbcL nucleotide sequences
33. Implications of rbcL sequence data for higher order relationships of the Loasaceae and the anomalous aquatic plant Hydrostachys (Hydrostachyaceae)
34. Monophyly and generic relationships of Polemoniaceae based on matK sequences
35. Phylogenetic relationships of Polemoniaceae inferred from 18S ribosomal DNA sequences
36. Phylogenetic implications of the multiple losses of the mitochondrial coxII.i3 intron in the angiosperms
37. Generic realignment in primuloid families of the Ericales s.l.: A phylogenetic analysis based on DNA sequences from three chloroplast genes and morphology
38. Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants
39. Plastome engineering of ribulose-l,5-bisphosphate carboxylase/oxygenase in tobacco to form a sunflower large subunit and tobacco small subunit hybrid
40. Multiple origin of the tropical forest tree family Icacinaceae
41. Evolution of the Australasian families Alseuosmiaceae, Argophyllaceae, and Phellinaceae
42. Phylogenetic relationships between some members of the subfamily Lamioideae family Labiatae inferred from nucleotide sequences of the rbcL gene
43. The evolution of non-coding chloroplast DNA and its application in plant systematics
44. ndhF sequence evolution and the major clades in the sunflower family
45. DNA sequence data reveal polyphyly of Brexioideae Brexiaceae; Saxifragaceae sensu lato
46. Selagineae and Manuleeae, two tribes or one. Phylogenetic studies in the Scrophulariaceae
47. Systematics of the Ericaceae, Empetraceae, Epacridaceae and related taxa based upon rbcL sequence data
48. Phylogeny and generic interrelationships of the Stylidiaceae (Asterales), with a possible extreme case of floral paedomorphosis
49. The Asteralean affinity of the Mauritian Roussea (Rousseaceae)
50. Intralineage variation in the pattern of rbcL nucleotide substitution
51. Interfamilial relationships of the Asteraceae-insights from rbcL sequence variation
52. Phylogenetic relationships among members of Saxifragaceae sensu lato based on rbcL sequence data
53. A molecular evaluation of the monophyly of the order Ebenales based upon rbcL sequence data
54. Phylogenetic relationships of Lecythidaceae: A cladisticanalysis using rbcL sequence and morphological data
55. Evidence for the polyphyly of the Scrophulariaceae based on chloroplast rbcL and ndhF sequences
56. Monophyly of the Asteridae and identification of their major lineages inferred from DNA sequences of rbcL
57. A parsimony analysis of the Asteridae sensu lato based on rbcL sequences
58. The phylogeny of the Asteridae sensu lato based on chloroplast ndhF gene sequences
59. Disintegration of the Scrophulariaceae
60. Relationships of Buddlejaceae s.l. investigated using parsimony jackknife and branch support analysis of chloroplast ndhF and rbcL sequence data
61. Discovery of paralogous nuclear gene sequences coding for the second-largest subunit of RNA polymerase II (RPB2) and their phylogenetic utility in Gentianales of the asterids
62. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae)
63. Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation
64. Relationships among "ancient araliads" and their significance for the systematics of Apiales
65. Clarification of the relationship between Apiaceae and Araliaceae based on matK and rbcL sequence data
66. Higher level relationships of Apiales (Apiaceae and Araliaceae) based on phylogenetic analysis of rbcL sequences
67. Chloroplast DNA phytogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae)
68. Molecular phylogeny of families related to Celastrales based on rbcL 5′ flanking sequences
69. Phylogeny of the eudicots: A nearly complete familial analysis based on rbcL gene sequences
70. Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences
71. The familial and subfamilial relationships of Apocynaceae and Asclepiadaceae evaluated with rbcL data
72. Is there a justification for differential a priori weighting in coding sequences - A case study from rbcL and Apocynaceae s.l.
73. The complete nucleotide-sequence of the tobacco chloroplast genome - Its gene organization and expression
74. Phylogenetic relationships in Saxifragaceae sensu lato: A comparison of topologies based on 18S rDNA and rbcL sequences
75. Choosing an approach and an ppropriate gene for phylogenetic analysis
76. Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
77. Angiosperm phylogeny inferred from 18S ribosomal DNA sequences
78. Phylogenetic analysis of Bignoniaceae based on the cpDNA gene sequences rbcL and ndhF
79. Universal primers for amplification of 3 noncoding regions of chloroplast DNA
80. The Taxa of the higher plants above the rank of order
81. CLUSTAL W: Improving the sensitivity of progressive multiple sequence Alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
82. Phylogeny of the Labiatae and Verbenaceae, inferred from rbcL sequences
83. Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche
84. Phylogenetic relationships of Cornaceae and close relatives inferred from matK and rbcL sequences
85. Phylogenetic relationships of Cornus L. sensu lato and putative relatives inferred from rbcL sequence data