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Volumn 5, Issue , 2005, Pages

Rate variation in parasitic plants: Correlated and uncorrelated patterns among plastid genes of different function

Author keywords

[No Author keywords available]

Indexed keywords

OROBANCHACEAE;

EID: 17444409700     PISSN: 14712148     EISSN: None     Source Type: Journal    
DOI: 10.1186/1471-2148-5-16     Document Type: Article
Times cited : (48)

References (36)
  • 2
    • 0030816744 scopus 로고    scopus 로고
    • Comparisons of the molecular evolutionary process at rbcLi and ndhF in the grass family (Poaceae)
    • Gaut BS, Clark LG, Wendel JF, Muse SV: Comparisons of the molecular evolutionary process at rbcLi and ndhF in the grass family (Poaceae). Mol Biol Evol 1997, 14:769-777.
    • (1997) Mol Biol Evol , vol.14 , pp. 769-777
    • Gaut, B.S.1    Clark, L.G.2    Wendel, J.F.3    Muse, S.V.4
  • 3
    • 0037308697 scopus 로고    scopus 로고
    • Broad-scale analysis contradicts the theory that generation time affects molecular evolutionary rates in plants
    • Whittle CA, Johnston MO: Broad-scale analysis contradicts the theory that generation time affects molecular evolutionary rates in plants. Journal of Molecular Evolution 2003, 56:223-233.
    • (2003) Journal of Molecular Evolution , vol.56 , pp. 223-233
    • Whittle, C.A.1    Johnston, M.O.2
  • 4
    • 17444365373 scopus 로고    scopus 로고
    • Mitochondrial Substitution Rates are Extraordinarily Elevated and Variable in a Genus of Flowering Plants
    • in press
    • Cho Y, Mower JP, Qiu YL, Palmer JD: Mitochondrial Substitution Rates are Extraordinarily Elevated and Variable in a Genus of Flowering Plants. Proc Natl Acad Sci USA in press.
    • Proc Natl Acad Sci USA
    • Cho, Y.1    Mower, J.P.2    Qiu, Y.L.3    Palmer, J.D.4
  • 5
    • 0032948901 scopus 로고    scopus 로고
    • Evidence for genetic drift in endosymbionts (Buchnera): Analyses of protein-coding genes
    • Wernegreen JJ, Moran NA: Evidence for genetic drift in endosymbionts (Buchnera): Analyses of protein-coding genes. Mol Biol Evol 1999, 16:83-97.
    • (1999) Mol Biol Evol , vol.16 , pp. 83-97
    • Wernegreen, J.J.1    Moran, N.A.2
  • 6
    • 0035107978 scopus 로고    scopus 로고
    • Intraspecific variation in symbiont genomes: Bottlenecks and the Aphid-Buchnera Association
    • Funk DJ, Wernegreen JJ, Moran NA: Intraspecific variation in symbiont genomes: Bottlenecks and the Aphid-Buchnera Association. Genetics 2001, 157:477-489.
    • (2001) Genetics , vol.157 , pp. 477-489
    • Funk, D.J.1    Wernegreen, J.J.2    Moran, N.A.3
  • 7
    • 0036791017 scopus 로고    scopus 로고
    • Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts
    • Itoh T, Martin W, Nei M: Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proceedings of the National Academy of Sciences, USA 2002, 99:12944-12948.
    • (2002) Proceedings of the National Academy of Sciences, USA , vol.99 , pp. 12944-12948
    • Itoh, T.1    Martin, W.2    Nei, M.3
  • 8
    • 0034998592 scopus 로고    scopus 로고
    • Evolutionary rates and species dicersity in flowering plants
    • Barraclough TG, Savolainen V: Evolutionary rates and species dicersity in flowering plants. Evolution 2001, 55:677-683.
    • (2001) Evolution , vol.55 , pp. 677-683
    • Barraclough, T.G.1    Savolainen, V.2
  • 9
    • 0036557787 scopus 로고    scopus 로고
    • Molecular rates parallel diversification contrasts between carnivorous plant sister lineages
    • Jobson RW, Albert VA: Molecular rates parallel diversification contrasts between carnivorous plant sister lineages. Cladistics 2002, 18:127-136.
    • (2002) Cladistics , vol.18 , pp. 127-136
    • Jobson, R.W.1    Albert, V.A.2
  • 10
    • 0034542564 scopus 로고    scopus 로고
    • The evolution of mutation rates: Separating causes from consequences
    • Sniegowski PD, Gerrish PJ, Johnson T, Shaver A: The evolution of mutation rates: separating causes from consequences. Bioessays 2000, 22:1057-1066.
    • (2000) Bioessays , vol.22 , pp. 1057-1066
    • Sniegowski, P.D.1    Gerrish, P.J.2    Johnson, T.3    Shaver, A.4
  • 11
    • 0036274061 scopus 로고    scopus 로고
    • Male-driven evolution of mitochondrial and chloroplastidial DNA sequences in plants
    • Whittle CA, Johnston MO: Male-driven evolution of mitochondrial and chloroplastidial DNA sequences in plants. Molecular Biology and Evolution 2002, 19:938-949.
    • (2002) Molecular Biology and Evolution , vol.19 , pp. 938-949
    • Whittle, C.A.1    Johnston, M.O.2
  • 12
    • 0029943449 scopus 로고    scopus 로고
    • Mismatch Repair in Replication Fidelity, Genetic Recombination, and Cancer Biology
    • Modrich P, Lahue R: Mismatch Repair in Replication Fidelity, Genetic Recombination, and Cancer Biology. Annual Review of Biochemistry 1996, 65:101-133.
    • (1996) Annual Review of Biochemistry , vol.65 , pp. 101-133
    • Modrich, P.1    Lahue, R.2
  • 14
    • 0025712978 scopus 로고
    • Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant
    • dePamphilis CW, Palmer JD: Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. Nature 1990, 348:337-339.
    • (1990) Nature , vol.348 , pp. 337-339
    • DePamphilis, C.W.1    Palmer, J.D.2
  • 15
    • 0030738482 scopus 로고    scopus 로고
    • Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: Many losses of photosynthesis and complex patterns of rate variation
    • dePamphilis CW, Young ND, Wolfe AD: Evolution of plastid gene rps2 in a lineage of hemiparasitic and holoparasitic plants: many losses of photosynthesis and complex patterns of rate variation. Proc Natl Acad Sci USA 1997, 94:7367-7372.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 7367-7372
    • DePamphilis, C.W.1    Young, N.D.2    Wolfe, A.D.3
  • 16
    • 0026052010 scopus 로고
    • Plastid translation and transcription genes in a non-photosynthetic plant: Intact, missing and pseudo genes
    • Morden CW, Wolfe KH, dePamphilis CW, Palmer JD: Plastid translation and transcription genes in a non-photosynthetic plant: intact, missing and pseudo genes. EMBO J 1991, 10:3281-3288.
    • (1991) EMBO J , vol.10 , pp. 3281-3288
    • Morden, C.W.1    Wolfe, K.H.2    DePamphilis, C.W.3    Palmer, J.D.4
  • 17
    • 0026451883 scopus 로고
    • Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: Loss or accelerated sequence evolution of tRNA and ribosomal protein genes
    • Wolfe KH, Morden CW, Ems SC, Palmer JD: Rapid evolution of the plastid translational apparatus in a nonphotosynthetic plant: Loss or accelerated sequence evolution of tRNA and ribosomal protein genes. Journal of Molecular Evolution 1992, 35:304-317.
    • (1992) Journal of Molecular Evolution , vol.35 , pp. 304-317
    • Wolfe, K.H.1    Morden, C.W.2    Ems, S.C.3    Palmer, J.D.4
  • 18
    • 0033636041 scopus 로고    scopus 로고
    • Purifying selection detected in the plastid gene matK and flanking ribozyme regions within a group II intron of nonphotosynthetic plants
    • Young ND, dePamphilis CW: Purifying selection detected in the plastid gene matK and flanking ribozyme regions within a group II intron of nonphotosynthetic plants. Molecular Biology and Evolution 2000, 17:1933-1941.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 1933-1941
    • Young, N.D.1    DePamphilis, C.W.2
  • 19
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino H, Hasegawa M: Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution 1989, 29:170-179.
    • (1989) Journal of Molecular Evolution , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 20
    • 0031684776 scopus 로고    scopus 로고
    • The effect of relaxed functional constraints on the photosynthetic gene rbcL in parasitic plants of Scrophulariales
    • Wolfe AD, dePamphilis CW: The effect of relaxed functional constraints on the photosynthetic gene rbcL in parasitic plants of Scrophulariales. Molecular Biology and Evolution 1998, 15:1243-1258.
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 1243-1258
    • Wolfe, A.D.1    DePamphilis, C.W.2
  • 22
    • 0030668042 scopus 로고    scopus 로고
    • The mystery of the rings: Structure and replication of mitochondrial genomes from higher plants
    • Backert S, Nielsen BL, Börner T: The mystery of the rings: structure and replication of mitochondrial genomes from higher plants. Trends Plant Sci 1997, 2:477-483.
    • (1997) Trends Plant Sci , vol.2 , pp. 477-483
    • Backert, S.1    Nielsen, B.L.2    Börner, T.3
  • 24
    • 0002063506 scopus 로고    scopus 로고
    • Chloroplast DNA replication: Mechanism, enzymes and replication origins
    • Kunnimalaiyaan M, Nielsen BL: Chloroplast DNA replication: mechanism, enzymes and replication origins. J Plant Biochem Biotechnol 1997, 6:1-7.
    • (1997) J Plant Biochem Biotechnol , vol.6 , pp. 1-7
    • Kunnimalaiyaan, M.1    Nielsen, B.L.2
  • 25
    • 0033387629 scopus 로고    scopus 로고
    • The evolution of parasitism in Scrophulariaceae/Orobanchaceae: Plastid gene sequences refute an evolutionary transition series
    • Young ND, Steiner KE, dePamphilis CW: The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequences refute an evolutionary transition series. Ann Mo Bot Gard 1999, 86:876-893.
    • (1999) Ann Mo Bot Gard , vol.86 , pp. 876-893
    • Young, N.D.1    Steiner, K.E.2    DePamphilis, C.W.3
  • 26
    • 0031127853 scopus 로고    scopus 로고
    • Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche
    • Wolfe AD, dePamphilis CW: Alternate paths of evolution for the photosynthetic gene rbcL in four nonphotosynthetic species of Orobanche. Plant Mol Biol 1997, 33:965-977.
    • (1997) Plant Mol Biol , vol.33 , pp. 965-977
    • Wolfe, A.D.1    DePamphilis, C.W.2
  • 27
    • 0028878618 scopus 로고
    • Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data
    • Wheeler WC: Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst Biol 1995, 44:321-331.
    • (1995) Syst Biol , vol.44 , pp. 321-331
    • Wheeler, W.C.1
  • 28
    • 0642309746 scopus 로고    scopus 로고
    • GapCoder automates the use of indel characters in phylogenetic analysis
    • Young ND, Healy J: GapCoder automates the use of indel characters in phylogenetic analysis. BMC Bioinformatics 2003, 4:6.
    • (2003) BMC Bioinformatics , vol.4 , pp. 6
    • Young, N.D.1    Healy, J.2
  • 29
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • Simmons MP, Ochoterena H: Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 2000, 49:369-381.
    • (2000) Systematic Biology , vol.49 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 30
    • 84983540175 scopus 로고
    • The retention index and the rescaled consistency index
    • Farris JS: The retention index and the rescaled consistency index. Cladistics 1989, 5:417-419.
    • (1989) Cladistics , vol.5 , pp. 417-419
    • Farris, J.S.1
  • 32
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA: Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 33
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
    • Muse SV, Gaut BS: A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol 1994, 11:715-724.
    • (1994) Mol Biol Evol , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 35
    • 0036667690 scopus 로고    scopus 로고
    • Power analysis of tests for loss of selective constraint in cave crayfish and non-photosynthetic plant lineages
    • Leebens-Mack J, dePamphilis CW: Power analysis of tests for loss of selective constraint in cave crayfish and non-photosynthetic plant lineages. Mol Biol Evol 2002, 19:1292-1302.
    • (2002) Mol Biol Evol , vol.19 , pp. 1292-1302
    • Leebens-Mack, J.1    DePamphilis, C.W.2
  • 36
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z: Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Molecular Biology and Evolution 1998, 15:568-573.
    • (1998) Molecular Biology and Evolution , vol.15 , pp. 568-573
    • Yang, Z.1


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