The evolution and expression of rbcL in holoparasitic sister-genera Harveya and Hyobanche (Orobanchaceae)

American Journal of Botany

Volumn 92, Issue 9, 2005, Pages 1575-1585

  Randle, Christopher P ^a   Wolfe, Andrea D ^b  

^a UNIVERSITY OF KANSAS   (United States)

^b OHIO STATE UNIVERSITY   (United States)

Author keywords

Harveya; Hyobanche; Orobanchaceae; Parasitic plant; rbcL; Rubisco; South Africa

Indexed keywords

EVOLUTION;

HARVEYA; HYOBANCHE; OROBANCHACEAE;

EID: 23944512581     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.92.9.1575     Document Type: Article

References (65)

1. BÖMMER, D., G. HABERHAUSEN, AND K. ZETSCHE. 1993. A large deletion in the plastid DNA of the holoparasitic flowering plant Cuscuta reflexa concerning two ribosomal proteins (rpl2, rpl23), one transfer RNA (trnl) and an ORF 2280 homologue. Current Genetics 24: 171-176.
2. BRICAUD, C. H., P. THALOUARN, AND S. RENAUDIN. 1986. Ribulose 1,5-biphosphate carboxylase activity in the holoparasite Lathraea clandestina L. Journal of Plant Physiology 125: 367-370.
3. BUNGARD, R. A. 2004. Photosynthetic evolution in parasitic plants: insight from the chloroplast genome. BioEssays 26: 235-247.
4. COLWELL, A. 1994. Genome evolution in a non-photosynthetic plant, Conopholis americana. Ph.D. dissertation, Washington University, St. Louis, Missouri, USA.
5. DANON, A. 1997. Translational regulation in the chloroplast. Plant Physiology 115: 1293-1298.
6. DE LA HARPE, A. C., N. GROBBELAAR, AND J. H. VISSER. 1980. The ultrastructure of the chloroplast and the chlorophyll content of various South African parasitic flowering plants. Zeitschrift Fur Pflanzenphysiologie 100: 85-90.
7. DE LA HARPE, A. C., J. H. VISSER, AND N. GROBBELAAR. 1981. Photosynthetic characteristics of some South African parasitic flowering plants. Zeitschrift Fur Pflanzenphysiologie 103: 265-275.
8. DELAVAULT, P. M., N. M. Russo, N. A. LUSSON, AND P. A. THALOUARN. 1996. Organization of the reduced plastid genome of Lathraea clandestina, an achlorophyllous parasitic plant. Physiologia Plantarum 96: 674-682.
9. DELAVAULT, P., V. SAKANYAN, AND P. THALOUARN. 1995. Divergent evolution of two plastid genes, rbcL and atpB, in a non-photosynthetic parasitic plant. Plant Molecular Biology 29: 1071-1079.
10. DEPAMPHILIS, C. W., AND J. D. PALMER. 1990. Loss of photosynthetic and chlororespiratory genes from the plastid genome of a parasitic flowering plant. Nature 348: 337-339.
11. DÖRR, I., AND R. KOLLMANN. 1995. Symplasmic sieve element continuity between Orobanche and its host. Botanica Acta 108: 47-55.
12. DOYLE, J. J., AND J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of leaf tissue. Phytochemical Bulletin 19: 11-15.
13. EMS, S. C., C. W. MORDEN, C. K. DIXON, K. H. WOLFE, C. W. DEPAMPHILIS, AND J. D. PALMER. 1995. Transcription, splicing, and editing of plastid RNAs in the nonphotosynthetic plant Epifagus virginiana. Plant Molecular Biology 29: 721-733.
14. FREYER, R., K. NECKERMANN, R. H. MAIER, AND H. KOSSEL. 1995. Structural and functional analysis of plastid genomes from parasitic plants: loss of an intron within the genus Cuscuta. Current Genetics 27: 580-586.
15. GARCÍA, M. A., E. H. NICHOLSON, AND D. L. NICKRENT. 2004. Extensive intra-individual variation in plastid rDNA sequences from the holoparasite Cynomorium coccineum (Cynomoriaceae). Journal of Molecular Evolution 58: 322-332.
16. GILLHAM, N. W., J. E. BOYNTON, AND C. R. HAUSER. 1994. Translational regulation of gene expression in chloroplasts and mitochondria. Annual Review of Genetics 28: 71-93.
17. HABERHAUSEN, G., K. VALENTIN, AND K. ZETSCHE. 1992. Organization and sequence of photosynthetic genes from the plastid genome of the holoparasitic flowering plant Cuscuta reflexa. Molecular & General Genetics 232: 154-161.
18. HAUPT, S., K. J. OPARKA, N. SAUER, AND S. NEUMANN. 2001. Macromolecular trafficking between Nicotiana tabacum and the holoparasite Cuscuta reflexa. Journal of Experimental Botany 52: 173-177.
19. HERRMANN, R. G., P. WESTHOFF, AND G. LINK. 1992. Biogenesis of plastids in higher plants. In R. G. Herrmann [ed.], Cell organelles, 274-349. Springer-Verlag, New York, New York, USA.
20. HIBBERD, J. M., R. A. BUNGARD, M. C. PRESS, W. D. JESCHKE, J. D. SCHOLES, AND W. P. QUICK. 1998. Localization of photosynthetic metabolism in the parasitic angiosperm Cuscuta reflexa. Planta 205: 506-513.
21. KUIJT, J., J. H. VISSER, AND H. C. WEBER. 1978. Morphological observations on leaf haustoria and related organs of the South African genus Hyobanche (Scrophulariaceae). Canadian Journal of Botany 56: 2981-2986.
22. KUMAR, S., K. TAMURA, I. B. JAKOBSEN, AND M. NEI. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
23. KURODA, H., AND P. MALIGA. 2001. Sequences downstream of the translation initiation codon are important determinants of translation efficiency in chloroplasts. Plant Physiology 125: 430-436.
24. 2 enrichment. Plant Cell Tissue and Organ Culture 50: 75-82.
25. LATZKO, E., AND G. J. KELLY. 1983. The many-faceted function of phosphoenolpyruvate carboxylase in C-3 plants. Physiologie Vegetale 21: 805-815.
26. LEEBENS-MACK, J., AND C. DEPAMPHILIS. 2002. Power analysis of tests for loss of selective constraint in cave crayfish and nonphotosynthetic plant lineages. Molecular Biology and Evolution 19: 1292-1302.
27. LOHAN, A. J., AND K. H. WOLFE. 1998. A subset of conserved tRNA genes in plastid DNA of nongreen plants. Genetics 150: 425-433.
28. LOSNER-GOSHEN, D., V. H. PORTNOY, A. M. MAYER, AND D. M. JOEL. 1998. Pectolytic activity by the haustorium of the parasitic plant Orobanche L. (Orobanchaceae) in host roots. Annals of Botany 81: 319-326.
29. MACHADO, M. A., AND K. ZETSCHE. 1990. A structural, functional and molecular analysis of plastids of the holoparasites Cuscuta reflexa and Cuscuta europaea. Planta 181: 91-96.
30. MADDISON, W. P., AND D. R. MADDISON. 1992. MacClade: analysis of phylogeny and character evolution. Sinauer, Sunderland, Massachusetts, USA.
31. MAYAK, S., T. TIROSH, J. E. THOMPSON, AND S. GHOSH. 1998. The fate of ribulose-1,5-bisphosphate carboxylase subunits during development of carnation petals. Plant Physiology and Biochemistry 36: 835-841.
32. MAYFIELD, S. P., C. B. YOHN, A. COHEN, AND A. DANON. 1995. Regulation of chloroplast gene expression. Annual Review of Plant Physiology and Plant Molecular Biology 46: 147-166.
33. MCCORMAC, D. J., H. LITZ, J. X. WANG, P. D. GOLLNICK, AND J. O. BERRY. 2001. Light-associated and processing-dependent protein binding to 5′ regions of rbcL mRNA in the chloroplasts of a C-4 plant. Journal of Biological Chemistry 276: 3476-3483.
34. MONDE, R. A., J. C. GREENE, AND D. B. STERN. 2000. The sequence and secondary structure of the 3′UTR affect 3′ end maturation, RNA accumulation, and translation in tobacco chloroplasts. Plant Molecular Biology 44: 529-542.
35. MORDEN, C. W., K. H. WOLFE, C. W. DEPAMPHILIS, AND J. D. PALMER. 1991. Plastid translation and transcription genes in a non-photosynthetic plant: intact, missing and pseudogenes. EMBO Journal 10: 3281-3288.
36. NEI, M., AND T. GOJOBORI. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution 3: 418-426.
37. NICKRENT, D. L., R. J. DUFF, AND D. A. M. KONINGS. 1997a. Structural analyses of plastid-derived 16S rRNAs in holoparasitic angiosperms. Plant Molecular Biology 34: 731-743.
38. NICKRENT, D. L., Y. OUYANG, R. J. DUFF, AND C. W. DEPAMPHILIS. 1997b. Do nonasterid holoparasitic flowering plants have plastid genomes? Plant Molecular Biology 34: 717-729.
39. RAMBAUT, A. 1996. Se-Al. Computer program distributed by author at website, http://evolve.zoo.ox.ac.uk/software/Se-Al/main.html.
40. RENAUDIN, S., P. THALOUARN, L. REY, J. VIDAL, AND F. LARHER. 1984. Phosphoenolpyruvate carboxylase in parasitic plants: further characterization in various species and localization at the level of cells and tissues in Lathraea clandestina L. Journal of Plant Physiology 116: 455-465.
41. RENAUDIN, S., J. VIDAL, AND F. LARHER. 1982. Characterization of phosphoenolpyruvate carboxylase in a range of parasitic phanerogames. Zeitschrift Fur Pflanzenphysiologie 106: 229-237.
42. ROTT, R., V. LIVEANU, R. G. DRAGER, D. B. STERN, AND G. SCHUSTER. 1998. The sequence and structure of the 3′ untranslated regions of chloroplast transcripts are important determinants of mRNA accumulation and stability. Plant Molecular Biology 36: 307-314.
43. RU, Q. H., G. A. LUO, S. LI, W. LU, G. F. LI, AND Y. D. GONG. 2000. Dissociation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) observed by capillary electrophoresis. Analyst 125: 1087-1090.
44. SAMBROOK, J., E. F. FRITSCH, AND T. MANIATIS. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, USA.
45. SCHUSTER, G., AND W. GRUISSEM. 1991. Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein. EMBO Journal 10: 1493-1502.
46. SHINOZAKI, K., AND M. SUGIURA. 1982. The nucleotide sequence of the tobacco chloroplast gene for the large subunit of ribulose-1,5-bisphosphate carboxylase oxygenase. Gene 20: 91-102.
47. SIEMEISTER, G., AND W. HÄCHTEL. 1990. Structure and expression of a gene encoding the large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL) in the colorless euglenoid flagellate Astasia longa. Plant Molecular Biology 14: 825-833.
48. SINGH, A., AND M. SINGH. 1993. Cell wall degrading enzymes in Orobanche aegyptiaca and its host Brassica campestris. Physiologia Plantarum 89: 177-181.
49. SPSS, INC. 1999. SPSS for Windows. SPSS, Chicago, Illinois, USA.
50. STEWART, G. R., AND M. C. PRESS. 1990. The physiology and biochemistry of parasitic angiosperms. Annual Review of Plant Physiology and Plant Molecular Biology 41: 127-151.
51. SWOFFORD, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). Sinauer, Sunderland, Massachusetts, USA.
52. THALOUARN, P., M.-C. ARNAUD, AND S. RENAUDIN. 1989. Caracté risation d'une ribulose-bisphosphate carboxylase chez Lathraea clandestina L., Scrophulariacee holoparasite et comparaison avec Digitalis purpurea L. autotrophe et Melampyrum pratense L. hemiparasite. Compte Rendus de l'Academie des Sciences, Paris 309: 275-280.
53. THALOUARN, P., C. THEODET, N. RUSSO, AND P. DELAVAULT. 1994. The reduced plastid genome of a non-photosynthetic angiosperm Orobanche hederae has retained the rbcL gene. Plant Physiology and Biochemistry 32: 233-242.
54. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN, AND D. G. HIGGINS. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882.
55. WEBER, H. C. 1980. Zur evolution des parasitismus bei den Scrophulariaceae und Orobanchaceae. Plant Systematics and Evolution 136: 217-232.
56. WEBER, H. C., AND J. H. VISSER. 1980. Zur anatomischen Struktur der aus Schuppenblättern hervorgegangen Kontaktorgane von Hyobanche (Scrophulariaceae). Flora 169: 476-497.
57. WHITNEY, S. M., AND T. J. ANDREWS. 2001. The gene for the ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) small subunit relocated to the plastid genome of tobacco directs the synthesis of small subunits that assemble into Rubisco. Plant Cell 13: 193-205.
58. WIMPEE, C. F., R. L. WROBEL, AND D. K. GARVIN. 1991. A divergent plastid genome in Conopholis americana, an achlorophyllous parasitic plant. Plant Molecular Biology 17: 161-166.
59. WOLFE, A. D., AND C. W. DEPAMPHILIS. 1997. Alternate paths of evolution for the photosynthetic gene rbcL in photosynthetic and nonphotosynthetic parasitic plants. Plant Molecular Biology 33: 965-977.
60. WOLFE, A. D., AND C. W. DEPAMPHILIS. 1998. The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosynthetic and non-photosynthetic parasitic plants. Molecular Biology and Evolution 15: 1243-1258.
61. WOLFE, A. D., AND C. P. RANDLE. 2001. Relationships within and among species of the holoparasitic genus Hyobanche (Orobanchaceae) inferred from ISSR banding patterns and nucleotide sequences. Systematic Botany 26: 120-130.
62. WOLFE, A. D., AND C. P. RANDLE. 2004. Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: implications for plant molecular systematics. Systematic Botany 29: 1011-1020.
63. WOLFE, K. H., C. W. MORDEN, S. C. EMS, AND J. D. PALMER. 1992a. Rapid evolution of the plastid translational apparatus in a non-photosynthetic plant: loss or accelerated sequence evolution of transfer RNA and ribosomal protein genes. Journal of Molecular Evolution 35: 304-317.
64. WOLFE, K. H., C. W. MORDEN, AND J. D. PALMER. 1992b. Function and evolution of a minimal plastid genome from a non-photosynthetic parasitic plant. Proceedings of the National Academy of Sciences, USA 89: 10648-10652.
65. YOUNG, N. D., K. E. STEINER, AND C. W. DEPAMPHILIS. 1999. The evolution of parasitism in Scrophulariaceae/Orobanchaceae: plastid gene sequences refute an evolutionary transition series. Annals of the Missouri Botanical Garden 86: 876-893.