Codivergence in heteromyid rodents (Rodentia: Heteromyidae) and their sucking lice of the genus Fahrenholzia (Phthiraptera: Anoplura)

Systematic Biology

Volumn 57, Issue 3, 2008, Pages 449-465

  Light, Jessica E ^a,b   Hafner, Mark S ^a  

^a LOUISIANA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

Cophylogenetic methods; Cophylogeny; Cospeciation; Host; Molecular rates; Parasite; Symbiosis

Indexed keywords

CYTOCHROME C OXIDASE;

ANIMAL; ANOPLURA; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETIC MARKER; GENETICS; HOST PARASITE INTERACTION; MOLECULAR EVOLUTION; PARASITOLOGY; PHYLOGENY; PHYSIOLOGY; REGRESSION ANALYSIS; RODENT; SPECIES DIFFERENTIATION; STATISTICAL MODEL;

ANIMALS; ANOPLURA; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; GENETIC MARKERS; GENETIC SPECIATION; HOST-PARASITE INTERACTIONS; LIKELIHOOD FUNCTIONS; PHYLOGENY; REGRESSION ANALYSIS; RODENTIA; SEQUENCE ANALYSIS, DNA;

ANOPLURA; FAHRENHOLZIA; HETEROMYIDAE; PHTHIRAPTERA; RODENTIA; VERTEBRATA;

EID: 45849097600     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1080/10635150802169610     Document Type: Article

References (82)

1. Alexander, L. F., and B. R. Riddle. 2005. Phylogenetics of the New World rodent family Heteromyidae. J. Mammal. 86:366-379.
2. Banks, J. C., and A. M. Paterson. 2005. Multi-host parasite species in cophylogenetic studies. Int. J. Parasitol. 35:741-746.
3. Casgrain, P., and P. Legendre. 2001. The R Package for Multivariate and Spatial Analysis. Version 4.0 d6, User's Manual. Département de Sciences Biologiques, Université de Montréal, Montréal.
4. Charleston, M. A. 1998. Jungles: A new solution to the host/parasite phylogeny reconciliation problem. Math. Biosci. 149:191-223.
5. Charleston, M. A., and R. D. M. Page. 2002. TREEMAP (v2.0). Applications for Apple Macintosh. University of Oxford, Oxford, UK.
6. Charleston, M. A., and D. L. Robertson. 2002. Preferential host switching by primate lentiviruses can account for phylogenetic similarity with the primate phylogeny. Syst. Biol. 51:528-535.
7. Clark, M. A., N. A. Moran, P. Baumann, and J. J. Wernegreen. 2000. Cospeciation between bacterial endosymbionts (Buchnera) and a recent radiation of aphids (Uroleucon) and pitfalls of testing for phylogenetic congruence. Evolution 54:517-525.
8. Dalgleish, R. C., R. L. Palma, R. D. Price, V. S. Smith. 2006. Fossil lice (Insecta: Phthiraptera) considered. Syst. Entomol. 31:648-651.
9. de Vienne, D. M., T. Giraud, and J. A. Shykoff. 2007. When can host shifts produce congruent host and parasite phylogenies? A simulation approach. J. Evol. Biol. 20:1428-1438.
10. Durden, L. A., and G. G. Musser. 1994. The sucking lice (Insecta, Anoplura) of the world: A taxonomic checklist with records of mammalian hosts and geographic distributions. Bull. Am. Mus. Nat. Hist. 218:1-90.
11. Eichler, W. 1942. Die Entfaltungsregel und andere Gesetzmäzigkeiten den parasitogenetischen Bziehungen der Mallophagen und andererständiger Parasiten zu ihren Wirten. Zool. Anz. 137:77-83.
12. Eisenberg, J. F. 1963. The behavior of heteromyid rodents. Univ. Calif. Publ. Zool. 69:1-100.
13. Genoways, H. H., and J. H. Brown. 1993. Biology of the Heteromyidae. The American Society of Mammalogists, Special Publication No. 10.
14. Goldman, N., J. P. Anderson, and A. G. Rodrigo. 2000. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49:652-670.
15. Gu, X., Y.-X. Fu, and W.-H. Li. 1995. Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol. Biol. Evol. 12:546-557.
16. Hafner, J. C., J. E. Light, D. J. Hafner, M. S. Hafner, E. Reddington, D. S. Rogers, and B. R. Riddle. 2007. Basal clades and molecular systematics of heteromyid rodents. J. Mammal. 88:1129-1145.
17. Hafner, M. S., J. W. Demastes, T. A. Spradling, and D. L. Reed. 2003. Cophylogeny between pocket gophers and chewing lice. Pages 195-220 in Tangled trees: Phylogeny, cospeciation, and coevolution (R. D. M. Page, ed.). The University of Chicago Press, Chicago, Illinois.
18. Hafner, M. S., J. E. Light, D. J. Hafner, S. V. Brant, T. A. Spradling, and J. W. Demastes. 2005. Cryptic species in the Mexican pocket gopher, Cratogeomys merriami. J. Mammal. 86:1095-1108.
19. Hafner, M. S., and S. A. Nadler. 1990. Cospeciation in host-parasite assemblages: Comparative analysis of rates of evolution and timing of cospeciation events. Syst. Zool. 39:192-204.
20. Hafner, M. S., P. D. Sudman, F. X. Villablanca, T. A. Spradling, J. W. Demastes, and S. A. Nadler. 1994. Diparate rates of molecular evolution in cospeciation hosts and parasites. Science 265:1087-1090.
21. Huelsenbeck, J. P., and J. P. Bollback. 2001. Empirical and hierarchical Bayesian estimation of ancestral states. Syst. Biol. 50:351-366.
22. Huelsenbeck, J. P., and B. Rannala. 1997. Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276:227-232.
23. Huelsenbeck, J. P., B. Rannala, and B. Larget. 2000. A Bayesian framework for the analysis of cospeciation. Evolution 54:352-364.
24. Huelsenbeck, J. P., B. Rannala, and B. Larget. 2003. A statistical perspective for reconstruction the history of host-parasite associations. Pages 93-119 in Tangled trees: Phylogeny, cospeciation, and coevolution (R. D. M. Page, ed.). The University of Chicago Press, Chicago, Illinois.
25. Huelsenbeck, J. P., B. Rannala, and Z. Yang. 1997. Statistical tests of host-parasite cospeciation. Evolution 51:410-419.
26. Huelsenbeck, J. P., and F. Ronquist. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
27. Hughes, J., M. Kennedy, K. P. Johnson, R. L. Palma, and R. D. M. Page. 2007. Multiple cophylogenetic analyses reveal frequent cospeciation between Pelecaniform birds and Pectinopygus lice. Syst. Biol. 56:232-251.
28. Huyse, T., and F. A. M. Volckaert. 2005. Comparing host and parsite phylogenies: Gyrodactylus flatworms jumping from goby to goby. Syst. Biol. 54:710-718.
29. Jackson, A. P. 2004a. Cophylogeny of the Ficus microcosm. Biol. Rev. 79:751-768.
30. Jackson, A. P. 2004b. A reconciliation analysis of host switching in plant-fungal symbioses. Evolution 58:1909-1923.
31. James, G. T. 1963. Paleontology and nonmarine stratigraphy of the Cuyuma Valley Badlands, California. Part 1. Geology, faunal interpretations, and systematic descriptions of Chiroptera, Insectivora, and Rodentia. Univ. Calif. Publ. Geol. Sci. 45:i-iv, 1-171.
32. Johnson, K. P., and D. H. Clayton. 2003. Coevolutionary history of ecological replicates: Comparing phylogenies of wing and body lice to columbiform hosts. Pages 262-286 in Tangled trees: Phylogeny, cospeciation, and coevolution (R. D. M. Page, ed.). The University of Chicago Press, Chicago, Illinois.
33. Johnson, K. P., D. M. Drown, and D. H. Clayton. 2001. A data based parsimony method of cophylogenetic analysis. Zool. Scripta 30:79-87.
34. Jones, W. T. 1993. The social systems of heteromyid rodents. Pages 575-595 in Biology of the Heteromyidae (H. H. Genoways and J. H. Brown, eds.). The American Society of Mammalogists, Special Publication No. 10.
35. Kawakita, A., A. Takimura, T. Terachi, T. Sota, and M. Kato. 2004. Cospeciation analysis of an obligate pollination mutualism: Have Glochidion trees (Euphorbiaceae) and pollinating Epicephala moths (Gracillariidae) diversified in parallel? Evolution 58:2201-2214.
36. Kendall, M., and J. D. Gibbons. 1990. Rank correlation methods, 5th edition. Edward Arnold, London.
37. Kim, K. C., H. D. Pratt, and C. J. Stonjanovich. 1986. The Sucking Lice of North America: An Illustrated Manual for Identification. The Pennsylvania State University Press, University Park, Pennsylvania.
38. Kishino, H., and M. Hasegawa. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order of Hominoidea. J. Mol. Evol. 29:170-179.
39. Leaché, A. D., and T. W. Reeder. 2002. Molecular systematics of the eastern fence lizard (Sceloporus undulatus): A comparison of parsimony, likelihood, and Bayesian approaches. Syst. Biol. 51:44-68.
40. Legendre, P. 2001a. Test of host-parasite coevolution: Program ParaFit user's guide. Département de Sciences Biologiques, Université de Montréal, Montréal.
41. Legendre, P. 2001b. Model II regression. User's guide. Département de Sciences Biologiques, Université de Montréal. Available at http://www.fas.umontreal.ca/biol/legendre/.
42. Legendre, P., and M. J. Anderson. 1998. Program DistPCoA. Département de Sciences Biologiques, Université de Montréal, Montréal.
43. Legendre, P., Y. Desdevises, and E. Bazin. 2002. A statistical test for host-parasite coevolution. Syst. Biol. 51:217-234.
44. Light, J. E., and M. S. Hafner. 2007a. Phylogenetics and host associations of Fahrenholzia sucking lice (Phthiraptera: Anoplura). Syst. Entomol. 32:359-370.
45. Light, J. E., and M. S. Hafner. 2007b. Disparate rates of evolution in sympatric lineages of chewing lice on pocket gophers. Mol. Phylogenet. Evol. 45:997-1013.
46. Lopez-Vaamonde, C., N. Wikstrom, C. Labandeira, H. C. J. Godfray, S. J. Goodman, and J. M. Cook. 2006. Fossil-calibrated molecular phylogenies reveal that leaf-mining moths radiated millions of years after their host plants. J. Evol. Biol. 19:1314-1326.
47. Maddison, W. P., and D. R. Maddison. 2000. MacClade: Analysis of phylogeny and character evolution. Version 4.0. Sinauer Associates, Sunderland, Massachusetts.
48. Marshall, A. G. 1981. The ecology of ectoparasitic insects. Academic Press, London.
49. Page, R. D. M. 1990. Component analysis: A valiant failure? Cladistics 6:119-136.
50. Page, R. D. M. 1991. Clocks, clades, and cospeciation: Comparing rates of evolution and timing of cospeciation events in host-parasite assemblages. Syst. Zool. 40:188-198.
51. Page, R. D. M. 1994. Parallel phylogenies: Reconstructing the history of host-parasite assemblages. Cladistics 10:155-173.
52. Page, R. D. M. 1996. Temporal congruence revisited: Comparison of mitochondrial DNA sequence divergence in cospeciating pocket gophers and their chewing lice. Syst. Biol. 45:151-167.
53. Page, R. D. M. 2003. Tangled Trees: Phylogeny, cospeciation, and coevolution. The University of Chicago Press, Chicago, Illinois.
54. Page, R. D. M., R. H. Cruickshank, M. Dickens, R. W. Furness, M. Kennedy, R. L. Palma, and V. S. Smith. 2004. Phylogeny of "Philoceanus complex" seabird lice (Phthiraptera: Ischnocera) inferred from mitochondrial DNA sequences. Mol. Phylogenet. Evol. 30:633-652.
55. Page, R. G. M., P. L. M. Lee, S. A. Becher, R. Griffiths, and D. H. Clayton. 1998. A different tempo of mitochondrial DNA evolution in birds and their parasitic lice. Mol. Phylogenet. Evol. 9:276-293.
56. Paterson, A. M., and J. Banks. 2001. Analytical approaches to measuring cospeciation of host and parasites: Through a glass, darkly. Int. J. Parasitol. 31:1012-1022.
57. Percy, D. M., R. D. M. Page, and Q. C. B. Cronk. 2004. Plant-insect interactions: Double-dating associated insect and plant lineages reveals asynchronous radiation. Syst. Biol. 53:120-127.
58. Posada, D., and T. R. Buckley. 2004. Model selection and model averaging in phylogenetics: Advantages of the AIC and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53:793-808.
59. Posada, D., and K. A. Crandall. 1998. ModelTest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
60. Price, R. D., R. A. Hellenthal, R. L. Palma, K. P. Johnson, D. H. Clayton. 2003. The chewing lice: World checklist and biological overview. Illinois Natural History Survey Special Publication 24.
61. Rambaut, A. 1996. Se-AL: Sequence Alignment Editor. Available at http://tree.bio.ed.ac.uk/software/seal/.
62. Rambaut, A., and N. C. Grassly. 1997. Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci. 13:235-238.
63. Reed, D. L., J. E. Light, J. M. Allen, and J. J. Kirchman. 2007. Pair of lice lost or parasites regained: The evolutionary history of anthropoid primate lice. BMC Biol. 5:7.
64. Reed, D. L., V. S. Smith, S. L. Hammond, A. R. Rogers, and D. H. Clayton. 2004. Genetic analysis of lice supports direct contact between modern and archaic humans. PloS Biol. 2:1-12.
65. Reeder, W. G. 1956. A review of Tertiary rodents in the family Heteromyidae. PhD dissertation, University of Michigan, Ann Arbor, Michigan.
66. Ronquist, F. 1995. Reconstructing the history of host-parasite associations using generalised parsimony. Cladistics 11:73-89.
67. Ronquist, F. 1998. Phylogenetic approaches in coevolution and biogeography. Zool. Scr. 26:313-322.
68. Ronquist, F. 2000. TreeFitter. Computer program distributed by the author. University of Uppsala, Uppsala.
69. Ronquist, F., and J. Liljeblad. 2001. Evolution of the gall wasp-host plant association. Evolution 55:2503-2522.
70. Ronquist, F., and S. Nylin. 1990. Process and pattern in the evolution of species associations. Syst. Zool. 39:323-344.
71. Ronsted, N., G. D. Weiblen, J. M. Cook, N. Salamin, C. A. Machado, and V. Savolainen. 2005. 60 million years of co-divergence in the fig-wasp symbiosis. Proc. R. Soc. Lond. Biol. 272:2593-2599.
72. Rust, R. W. 1974. The population dynamics and host utilization of Geomydoecus oregonus, a parasite of Thomomys bottae. Oecologia 15:287-304.
73. Rutschmann, F., T. Eriksson, K. AbuSalim, and E. Conti. 2007. Assessing calibration uncertainty in molecular dating: The assignment of fossils to alternative calibration points. Syst. Biol. 56:591-608.
74. Shimodaira, H., and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16:1114-1116.
75. Smith, V. S., R. C. Dalgleish, and R. H. Cruickshank. 2007. Fossil lice (Insecta: Phthiraptera) reconsidered (volume 31, pages 648, 2006). Syst. Entomol. 32:196.
76. Sorenson, M. D., C. N. Balakrishnan, and R. B. Payne. 2004. Cladelimited colonization in brood parasitic finches (Vidua spp.). Syst. Biol. 53:140-153.
77. Spradling, T. A, S. V. Brant, M. S. Hafner, and C. J. Dickerson. 2004. DNA data support a rapid radiation of pocket gopher genera (Rodentia: Geomyidae). J. Mammal. Evol. 11:105-125.
78. Switzer, W. M., M. Salemi, V. Shanmugam, F. Gao, M. Cong, C. Kuiken, V. Bhullar, B. E. Beer, D. Vallet, A. Gautier-Hion, Z. Tooze, F. Villinger, E. C. Holmes, and W. Heneine. 2005. Ancient cospeciation of simian foamy viruses and primates. Nature 374:376-380.
79. Swofford, D. L., 2003. PAUP*: Phylogenetic analysis using parsimony (*and other methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
80. Wahlert, J. H. 1993. The fossil record. Pages 1-37 in Biology of the Heteromyidae (H. H. Genoways and J. H. Brown, eds.). The American Society of Mammalogists, Special Publication No. 10.
81. Whitaker, J. O., Jr., W. J. Wrenn, and R. E. Lewis. 1993. Parasites. Pages 386-478 in Biology of the Heteromyidae (H. H. Genoways and J. H. Brown, eds.). The American Society of Mammalogists, Special Publication No. 10.
82. Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable sites over sites: Approximate methods. J. Mol. Evol. 39:306-314.