Phylogenetic approaches in coevolution and biogeography

Zoologica Scripta

Volumn 26, Issue 4, 1997, Pages 313-322

  Ronquist, Fredrik ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

CLASSIFICATION; EVOLUTION; GEOGRAPHY; PHYLOGENY; REVIEW; SPECIES DIFFERENTIATION;

APHIDIDAE; BACTERIA (MICROORGANISMS); CYNIPIDAE; GEOMYIDAE; PHTHIRAPTERA; PRIMATES; VESPIDAE;

EID: 0031430589     PISSN: 03003256     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1463-6409.1997.tb00421.x     Document Type: Review

References (43)

1. Avise, J. C. 1994. Molecular Markers, Natural History and Evolution. Chapman & Hall, New York.
2. Avise, J. C., Arnold, J., Ball, R. E., Bermingham, E., Lamb, T., Neigel, J. E., Reeb, C. A. & Saunders, N. C. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. - A. Rev. Ecol. Syst. 18: 489-522.
3. Brooks, D. R. 1988. Macroevolutionary comparisons of host and parasite phylogenies. - A. Rev. Ecol. Syst. 19: 235-259.
4. Brown, J. R. & Doolittle, W. F. 1995. Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications. -Proc. natn. Acad. Sci. U.S.A. 92: 2441-2445.
5. Crisci, J. V. & Morrone, J. J. 1995. Historical biogeography: Introduction to methods. - A. Rev. Ecol. Syst. 26: 373-401.
6. De Rijk, P., Van de Peer, Y., Van den Broeck, I. & De Wachter, R. 1995. Evolution according to large ribosomal subunit RNA. - J. molec. Evol. 41: 366-375.
7. Enghoff, H. 1996. Historical biogeography of the holarctic: Area relationships, ancestral areas, and dispersal of non-marine animals. - Cladistics 11: 223-263.
8. Glen, D. R. & Brooks, D. R. 1985. Parasitological evidence pertaining to the phylogeny of the hominoid primates. - Biol. J. Linn. Soc. 27: 331-354.
9. Goodman, M., Czelusniak, J., Moore, G. W., Romero-Herrera, A. E. & Matsuda, G. 1979. Fitting the gene lineage into its species lineage: A parsimony strategy illustrated by cladograms constructed from globin sequences. - Syst. Zool. 28: 132-168.
10. Grubb, R. 1994. Normalflora. In (Engström, C. et al., eds.), pp. 264. Nationalencyklopedin Bra Böcker, Höganäs.
11. Guigó, R., Muchnik, I. & Smith, T. F. 1996. Reconstruction of ancient molecular phylogeny. - Molec. Phyl. & Evol. 6: 189-213.
12. Gupta, R. S. & Golding, G. B. 1993. Evolution of HSP70 gene and its implications regarding relationships between Archaebacteria, Eubacteria, and Eukaryotes. - J. molec. Evol. 37: 573-582.
13. Hafner, M. S. & Page, R. D. M. 1995. Molecular phylogenies and host-parasite cospeciation: Gophers and lice as a model system. - Phil. Trans. R. Soc. B 349: 77-83.
14. Hafner, M. S., Sudman, P. D., Villablanca, F. X., Spradling, T. A., Demastes, S. W. & Nadler, S. A. 1994. Disparate rates of molecular evolution in cospeciating hosts and parasites. - Science 265: 1087-1090.
15. Huelsenbeck, J., Rannala, B. & Yang, Z. 1997. Statistical tests of host-parasite cospeciation. - Evolution 51: 410-419.
16. Iwabe, N., Kuma, K.-I., Hasegawa, M., Osawa, S. & Miyata, T. 1989. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. - Proc. nutn. Acad. Sci. U. S. A. 86: 9355-9359.
17. Klein, N. K., Payne, R. B. & Nilane, M. E. D. 1993. A molecular genetic perspecitve on speciation in the brood parasitic Vidua finches. - Annls Mus. r. Afr. cent. 268: 29-39.
18. Leigh Brown, A. J. & Holmes, E. C. 1994. Evolutionary biology of human immunodeficiency virus. - A. Rev. Ecol. Syst. 25: 127-165.
19. Maddison, D. R., Ruvolo, M. & Swofford, D. L. 1992. Geographic origins of human mitochondrial DNA: Phylogenetic evidence from control region sequences. - Syst. Biol. 41: 111-124.
20. Mindell, D. P., Schultz, J. W. & Ewald, P. W. 1995. The AIDS pandemic is new, but is HIV new? - Syst. Biol. 44: 77-92.
21. Mirkin, B., Muchnik, I. & Smith, T. F. 1995. A biologically consistent model for comparing molecular phylogenies. - J. comput. Biol. 2: 493-507.
22. Moran, N. & Baumann, P. 1994. Phylogenetics of cytoplasmically inherited microorganisms of arthropods. - Trends Ecol. Evol. 9: 15-20.
23. Moran, N. A., Baumann, P. & Von Dohlen, C. 1994. Use of DNA sequences to reconstruct the history of the association between members of the Sternorrhyncha (Homoptera) and their bacterial endosymbionts. - Eur. J. Ent. 91: 79-83.
24. Moran, N. A., Munson, M. A., Baumann, P. & Ishikawa, H. 1993. A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. - Proc. R. Soc. B 253: 167-171.
25. Page, R. D., Clayton, D. H. & Paterson, A. M. 1996. Lice and cospeciation: A response to Barker. - Int. J. Parasit. 26: 213-218.
26. Page, R. D. M. 1993. Genes, organisms, and areas: the problem of multiple lineages. - Syst. Biol. 42: 77-84.
27. Page, R. D. M. 1994. Maps between trees and cladistic analysis of historical associations among genes, organisms, and areas. - Syst. Biol. 43: 58-77.
28. Page, R. D. M. 1995. Parallel phylogenies: Reconstructing the history of host-parasite assemblages. - Cladistics 10: 155-173.
29. Page, R. D. M. 1996. Temporal congruence revisited: Comparison of mitochondrial DNA sequence divergence in cospeciating pocket gophers and their chewing lice. - Syst. Biol. 45: 151-167.
30. Page, R. D. M. & Charleston, M. A. 1997. From gene to organismal phylogeny: Reconciled trees and the gene tree/species tree problem. -Molec. Phyl. & Evol. 7: 231-240.
31. Page, R. D. M. & Hafner, M. S. 1996. Molecular phylogenies and host-parasite cospeciation: Gophers and lice as a model system. In New uses for new phylogenies (eds. Harvey, P. H., Leigh Brown, A. J., Maynard Smith, J. & Nee, S.): 255-270. Oxford University Press, Oxford.
32. Ronquist, F. 1996. Reconstructing the history of host-parasite associations using generalised parsimony. - Cladistics 11: 73-89.
33. Ronquist, F. 1997. Dispersal-vicariance analysis: A new approach to the quantification of historical biogeography. - Syst. Biol. 46: 195-203.
34. Ronquist, F. in press. Three-dimensional cost matrix optimisation and maximum cospeciation. - Cladistics.
35. Ronquist, F. & Liljeblad, J. submitted. Evolution of the gall wasp-host plant association. - Evolution.
36. Ronquist, F. & Nylin, S. 1990. Process and pattern in the evolution of species associations. - Syst. Zool. 39: 323-344.
37. Ruvolo, M. 1996. A new approach to studying modern human origins: Testing with coalescence time distributions. - Molec. Phyl. & Evol. 5: 202-219.
38. Shoshani, J., Groves, C. P., Simons, E. L. & Gunnell, G. F. 1996. Primate phylogeny: Morphological vs molecular results. - Molec. Phyl. & Evol. 5: 102-154.
39. Siddall, M. E. 1997. The AIDS pandemic is new, but is HIV not new? -Cladistics 13: 267-273.
40. Sola, S. & Kohler, M. 1993. Recent discoveries of Dryopithecus shed new light on evolution of great apes. - Nature 365: 543-545.
41. Vigilant, L., Stoneking, M., Harpending, H., Hawkes, K. & Wilson, A. C. 1991. African populations and the evolution of human mitochondrial DNA. - Science 253: 1503-1507.
42. Woese, C. R., Kandler, O. & Wheelis, M. L. 1990. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria and Eucarya. - Proc. natn. Acad. Sci. U.S.A. 87: 4576-4579.
43. Zhang, L. 1997. On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. - J. comput. Biol. 4: 177-187.