-
3
-
-
0026777199
-
-
C.-Y. Ou et al., Science 256, 1165 (1992); S. T. Nichol et al., ibid. 262, 914 (1993); B. Hjelle et al., J. Virol. 68, 592 (1994).
-
(1992)
Science
, vol.256
, pp. 1165
-
-
Ou, C.-Y.1
-
4
-
-
0027910025
-
-
C.-Y. Ou et al., Science 256, 1165 (1992); S. T. Nichol et al., ibid. 262, 914 (1993); B. Hjelle et al., J. Virol. 68, 592 (1994).
-
(1993)
Science
, vol.262
, pp. 914
-
-
Nichol, S.T.1
-
5
-
-
0028047305
-
-
C.-Y. Ou et al., Science 256, 1165 (1992); S. T. Nichol et al., ibid. 262, 914 (1993); B. Hjelle et al., J. Virol. 68, 592 (1994).
-
(1994)
J. Virol.
, vol.68
, pp. 592
-
-
Hjelle, B.1
-
6
-
-
0030310653
-
-
D. L. Swofford, J. L. Thorne, J. Felsenstein, B. M. Wiegmann, Syst. Biol. 45, 575 (1996).
-
(1996)
Syst. Biol.
, vol.45
, pp. 575
-
-
Swofford, D.L.1
Thorne, J.L.2
Felsenstein, J.3
Wiegmann, B.M.4
-
8
-
-
0000266922
-
-
J. W. Archie, Syst. Zool. 38, 239 (1989); D. Maddison, Evolution 44, 539 (1990).
-
(1989)
Syst. Zool.
, vol.38
, pp. 239
-
-
Archie, J.W.1
-
9
-
-
0000989477
-
-
J. W. Archie, Syst. Zool. 38, 239 (1989); D. Maddison, Evolution 44, 539 (1990).
-
(1990)
Evolution
, vol.44
, pp. 539
-
-
Maddison, D.1
-
12
-
-
0002619979
-
-
J. McNeill, Ed. Systematics Association, London
-
A. W. F. Edwards and L. L. Cavalli-Sforza, in Phenetic and Phylogenetic Classification, J. McNeill, Ed. (Systematics Association, London, 1964), pp. 67-76; L. L. Cavalli-Sforza and A. W. F. Edwards, Evolution 21, 550 (1967) .
-
(1964)
Phenetic and Phylogenetic Classification
, pp. 67-76
-
-
Edwards, A.W.F.1
Cavalli-Sforza, L.L.2
-
13
-
-
0000156374
-
-
A. W. F. Edwards and L. L. Cavalli-Sforza, in Phenetic and Phylogenetic Classification, J. McNeill, Ed. (Systematics Association, London, 1964), pp. 67-76; L. L. Cavalli-Sforza and A. W. F. Edwards, Evolution 21, 550 (1967) .
-
(1967)
Evolution
, vol.21
, pp. 550
-
-
Cavalli-Sforza, L.L.1
Edwards, A.W.F.2
-
15
-
-
84920297104
-
-
See the supplementary material on likelihood theory, available to Science Online subscribers at Science's World Wide Web site, http://www.sciencemag.org.
-
-
-
-
16
-
-
0028177080
-
-
M. K. Kuhner and J. Felsenstein, Mol. Biol. Evol. 11, 459 (1994); Y. Tateno, N. Takezaki, M. Nei, ibid., p. 261; B. S. Gaut and P. O. Lewis, ibid. 12, 152 (1995); J. P. Huelsenbeck, ibid., p. 843.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 459
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
17
-
-
0028177080
-
-
M. K. Kuhner and J. Felsenstein, Mol. Biol. Evol. 11, 459 (1994); Y. Tateno, N. Takezaki, M. Nei, ibid., p. 261; B. S. Gaut and P. O. Lewis, ibid. 12, 152 (1995); J. P. Huelsenbeck, ibid., p. 843.
-
Mol. Biol. Evol.
, pp. 261
-
-
Tateno, Y.1
Takezaki, N.2
Nei, M.3
-
18
-
-
0028887457
-
-
M. K. Kuhner and J. Felsenstein, Mol. Biol. Evol. 11, 459 (1994); Y. Tateno, N. Takezaki, M. Nei, ibid., p. 261; B. S. Gaut and P. O. Lewis, ibid. 12, 152 (1995); J. P. Huelsenbeck, ibid., p. 843.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 152
-
-
Gaut, B.S.1
Lewis, P.O.2
-
19
-
-
0028177080
-
-
M. K. Kuhner and J. Felsenstein, Mol. Biol. Evol. 11, 459 (1994); Y. Tateno, N. Takezaki, M. Nei, ibid., p. 261; B. S. Gaut and P. O. Lewis, ibid. 12, 152 (1995); J. P. Huelsenbeck, ibid., p. 843.
-
Mol. Biol. Evol.
, pp. 843
-
-
Huelsenbeck, J.P.1
-
21
-
-
0004128472
-
-
Johns Hopkins Univ. Press, Baltimore, MD
-
A. W. F. Edwards, Likelihood (Johns Hopkins Univ. Press, Baltimore, MD, 1972).
-
(1972)
Likelihood
-
-
Edwards, A.W.F.1
-
22
-
-
0000347869
-
-
D. R. Cox, Math. Stat. Prob. 1, 105 (1961); J. R. Stat. Soc. Ser. B 24, 406 (1962).
-
(1961)
Math. Stat. Prob.
, vol.1
, pp. 105
-
-
Cox, D.R.1
-
23
-
-
84920302036
-
-
D. R. Cox, Math. Stat. Prob. 1, 105 (1961); J. R. Stat. Soc. Ser. B 24, 406 (1962).
-
(1962)
J. R. Stat. Soc. Ser. B
, vol.24
, pp. 406
-
-
-
28
-
-
0028214103
-
-
D. Barry and J. A. Hartigan, Stat. Sci. 2, 191 (1987); Z. Yang, J. Mol. Evol. 39, 105 (1994).
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 105
-
-
Yang, Z.1
-
29
-
-
0014680905
-
-
J. L. King and T. H. Jukes, Science 164, 788 (1969); M. Hasegawa, H. Kishino, T. Yano, J. Mol. Evol. 22, 160 (1985); S. R. Palumbi, ibid. 29, 180 (1989); Z. Yang, Mol. Biol. Evol. 10, 1396 (1993); J. Mol. Evol. 39, 306 (1994).
-
(1969)
Science
, vol.164
, pp. 788
-
-
King, J.L.1
Jukes, T.H.2
-
30
-
-
0022376704
-
-
J. L. King and T. H. Jukes, Science 164, 788 (1969); M. Hasegawa, H. Kishino, T. Yano, J. Mol. Evol. 22, 160 (1985); S. R. Palumbi, ibid. 29, 180 (1989); Z. Yang, Mol. Biol. Evol. 10, 1396 (1993); J. Mol. Evol. 39, 306 (1994).
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
31
-
-
0024359678
-
-
J. L. King and T. H. Jukes, Science 164, 788 (1969); M. Hasegawa, H. Kishino, T. Yano, J. Mol. Evol. 22, 160 (1985); S. R. Palumbi, ibid. 29, 180 (1989); Z. Yang, Mol. Biol. Evol. 10, 1396 (1993); J. Mol. Evol. 39, 306 (1994).
-
(1989)
J. Mol. Evol.
, vol.29
, pp. 180
-
-
Palumbi, S.R.1
-
32
-
-
0027132974
-
-
J. L. King and T. H. Jukes, Science 164, 788 (1969); M. Hasegawa, H. Kishino, T. Yano, J. Mol. Evol. 22, 160 (1985); S. R. Palumbi, ibid. 29, 180 (1989); Z. Yang, Mol. Biol. Evol. 10, 1396 (1993); J. Mol. Evol. 39, 306 (1994).
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396
-
-
Yang, Z.1
-
33
-
-
0028064845
-
-
J. L. King and T. H. Jukes, Science 164, 788 (1969); M. Hasegawa, H. Kishino, T. Yano, J. Mol. Evol. 22, 160 (1985); S. R. Palumbi, ibid. 29, 180 (1989); Z. Yang, Mol. Biol. Evol. 10, 1396 (1993); J. Mol. Evol. 39, 306 (1994).
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306
-
-
-
37
-
-
0027998772
-
-
M. S. Hafner et al., Science 265, 1087 (1994); M. S. Hafner and R. D. M. Page, Philos. Trans. R. Soc. London Ser. B 349, 77 (1995).
-
(1994)
Science
, vol.265
, pp. 1087
-
-
Hafner, M.S.1
-
43
-
-
0029836453
-
-
D. E. Dykhuizen and L. Green, J. Bacteriol. 173, 7257 (1991); D. S. Hibbett, Mol. Biol. Evol. 13, 903 (1996).
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 903
-
-
Hibbett, D.S.1
-
45
-
-
0000494208
-
-
D. R. Brooks, Syst. Zool. 30, 229 (1981); D. Simberloff, ibid. 36, 175 (1987); M. S. Hafner and S. A. Nadler, Nature 332, 258 (1988).
-
(1981)
Syst. Zool.
, vol.30
, pp. 229
-
-
Brooks, D.R.1
-
46
-
-
45849089097
-
-
D. R. Brooks, Syst. Zool. 30, 229 (1981); D. Simberloff, ibid. 36, 175 (1987); M. S. Hafner and S. A. Nadler, Nature 332, 258 (1988).
-
(1987)
Syst. Zool.
, vol.36
, pp. 175
-
-
Simberloff, D.1
-
47
-
-
0024164575
-
-
D. R. Brooks, Syst. Zool. 30, 229 (1981); D. Simberloff, ibid. 36, 175 (1987); M. S. Hafner and S. A. Nadler, Nature 332, 258 (1988).
-
(1988)
Nature
, vol.332
, pp. 258
-
-
Hafner, M.S.1
Nadler, S.A.2
-
49
-
-
84920297103
-
-
note
-
The LRT statistic for the test of congruence was calculated assuming a F81 (70) model of DNA substitution. This model allows for different equilibrium nucleotide frequencies but assumes that the rate of transitions is equal to the rate of transversions. The significance of the LRT statistic -2 log A = 69.58 was approximated using the parametric bootstrap procedure.
-
-
-
-
54
-
-
0004248459
-
-
Sinauer, Sunderland, MA
-
We used a tester version of the program PAUP* 4.0 [D. L. Swofford, PAUP*: Phylogenetic Analysis Using Parsimony (*And Other Methods), Version 4.0 (Sinauer, Sunderland, MA, 1996)]. This program estimates trees under the parsimony, distance, and maximum likelihood criteria.
-
(1996)
PAUP*: Phylogenetic Analysis Using Parsimony (*And Other Methods), Version 4.0
-
-
Swofford, D.L.1
-
55
-
-
84920297102
-
-
note
-
L = 0.18.
-
-
-
-
56
-
-
0000704795
-
-
D. M. Hillis, C. Moritz, B. Mable, Eds. Sinauer, Sunderland, MA
-
D. M. Hillis, B. Mable, C. Moritz, in Molecular Systematics, D. M. Hillis, C. Moritz, B. Mable, Eds. (Sinauer, Sunderland, MA, 1996), pp. 515-543.
-
(1996)
Molecular Systematics
, pp. 515-543
-
-
Hillis, D.M.1
Mable, B.2
Moritz, C.3
-
57
-
-
84920297101
-
-
note
-
The Felsenstein 1984 (F84) model has been implemented in J. Felsenstein's DNAML program since 1984. This model allows different equilibrium nucleotide frequencies and a transition rate-transversion rate bias.
-
-
-
-
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-
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-
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note
-
We thank J. Bull, J. Garza, D. Hillis, R. Nielsen, A. Meyer, M. Slatkin, D. Wake, T. Wiehe, and Z. Yang for critical review of the manuscript. Supported by NIH grant GM40282 to M. Slatkin, a Miller postdoctoral fellowship (J.H.), and a Natural Sciences and Engineering Research Council (NSERC) of Canada postdoctoral fellowship (B.R.).
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