-
1
-
-
36248966554
-
Understanding the accuracy of statistical haplotype inference with sequence data of known phase
-
ANDRÉS, A. M., A. G. CLARK, L. SHIMMIN, E. BOERWINKLE, C. F. SING et al., 2007 Understanding the accuracy of statistical haplotype inference with sequence data of known phase. Genet. Epidemiol. 31: 659-671.
-
(2007)
Genet. Epidemiol
, vol.31
, pp. 659-671
-
-
ANDRÉS, A.M.1
CLARK, A.G.2
SHIMMIN, L.3
BOERWINKLE, E.4
SING, C.F.5
-
2
-
-
0034892915
-
Lower-than-expected linkage disequilibrium between tightly linked markers in humans suggests a role for gene conversion
-
ARDLIE, K., S. N. LIU-CORDERO, M. A. EBERLE, M. DALY, J. BARRETT et al., 2001 Lower-than-expected linkage disequilibrium between tightly linked markers in humans suggests a role for gene conversion. Am. J. Hum. Genet. 69: 582-589.
-
(2001)
Am. J. Hum. Genet
, vol.69
, pp. 582-589
-
-
ARDLIE, K.1
LIU-CORDERO, S.N.2
EBERLE, M.A.3
DALY, M.4
BARRETT, J.5
-
3
-
-
0032231877
-
Comprehensive human genetic maps: Individual and sex-specific variation in recombination
-
BROMAN, K. W., J. C. MURRAY, V. C. SHEFFIELD, R. L. WHITE and J. L. WEBER, 1998 Comprehensive human genetic maps: individual and sex-specific variation in recombination. Am. J. Hum. Genet. 63: 861-869.
-
(1998)
Am. J. Hum. Genet
, vol.63
, pp. 861-869
-
-
BROMAN, K.W.1
MURRAY, J.C.2
SHEFFIELD, V.C.3
WHITE, R.L.4
WEBER, J.L.5
-
4
-
-
0021679717
-
Nonuniform recombination within the human beta-globingene cluster
-
CHAKRAVARTI, A., K. H. BUETOW, S. E. ANTONARAKIS, P. G. WABER, C. D. BOEHM et al., 1984 Nonuniform recombination within the human beta-globingene cluster. Am. J. Hum. Genet. 36: 1239-1258.
-
(1984)
Am. J. Hum. Genet
, vol.36
, pp. 1239-1258
-
-
CHAKRAVARTI, A.1
BUETOW, K.H.2
ANTONARAKIS, S.E.3
WABER, P.G.4
BOEHM, C.D.5
-
5
-
-
3042700117
-
Evidence for substantial fine-scale variation in recombination rates across the human genome
-
CRAWFORD, D. C., T. BHANGALE, N. LI, G. HELLENTHAL, M. J. RIEDER et al., 2004 Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat. Genet. 36: 700-706.
-
(2004)
Nat. Genet
, vol.36
, pp. 700-706
-
-
CRAWFORD, D.C.1
BHANGALE, T.2
LI, N.3
HELLENTHAL, G.4
RIEDER, M.J.5
-
6
-
-
0042830294
-
Distribution of meiotic recombination sites
-
DE MASSY, B., 2003 Distribution of meiotic recombination sites. Trends Genet. 19: 514-522.
-
(2003)
Trends Genet
, vol.19
, pp. 514-522
-
-
DE MASSY, B.1
-
7
-
-
21644446832
-
The extent and importance of intragenic recombination
-
DE SILVA, E., L. A. KELLEY and M. P. STUMPF, 2004 The extent and importance of intragenic recombination. Hum. Genomics 1: 410-420.
-
(2004)
Hum. Genomics
, vol.1
, pp. 410-420
-
-
DE SILVA, E.1
KELLEY, L.A.2
STUMPF, M.P.3
-
8
-
-
33845368295
-
SequenceLDhot: Detecting recombination hotspots
-
FEARNHEAD, P., 2006 SequenceLDhot: detecting recombination hotspots. Bioinformatics 22: 3061-3066.
-
(2006)
Bioinformatics
, vol.22
, pp. 3061-3066
-
-
FEARNHEAD, P.1
-
9
-
-
0035675042
-
Estimating recombination rates from population genetic data
-
FEARNHEAD, P., and P. DONNELLY, 2001 Estimating recombination rates from population genetic data. Genetics 159: 1299-1318.
-
(2001)
Genetics
, vol.159
, pp. 1299-1318
-
-
FEARNHEAD, P.1
DONNELLY, P.2
-
10
-
-
27244445943
-
A novel method with improved power to detect recombination hotspots from polymorphism data reveals multiple hotspots in human genes
-
FEARNHEAD, P., and N. G. SMITH, 2005 A novel method with improved power to detect recombination hotspots from polymorphism data reveals multiple hotspots in human genes. Am. J. Hum. Genet. 77: 781-794.
-
(2005)
Am. J. Hum. Genet
, vol.77
, pp. 781-794
-
-
FEARNHEAD, P.1
SMITH, N.G.2
-
11
-
-
4644362514
-
Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots
-
FEARNHEAD, P., R. M. HARDING, J. A. SCHNEIDER, S. MYERS and P. DONNELLY, 2004 Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots. Genetics 167: 2067-2081.
-
(2004)
Genetics
, vol.167
, pp. 2067-2081
-
-
FEARNHEAD, P.1
HARDING, R.M.2
SCHNEIDER, J.A.3
MYERS, S.4
DONNELLY, P.5
-
12
-
-
0034835229
-
Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels
-
FRISSE, L., R. R. HUDSON, A. BARTOSZEWICZ, J. D. WALL, J. DONFACK et al., 2001 Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. Am. J. Hum. Genet. 69: 831-843.
-
(2001)
Am. J. Hum. Genet
, vol.69
, pp. 831-843
-
-
FRISSE, L.1
HUDSON, R.R.2
BARTOSZEWICZ, A.3
WALL, J.D.4
DONFACK, J.5
-
13
-
-
5044229945
-
-
Oxford University Press, Oxford
-
HEIN, J., M. SCHIERUP and C. WIUF, 2005 Gene Genealogies, Variation and Evolution. A Primer in Coalescent Theory. Oxford University Press, Oxford.
-
(2005)
Gene Genealogies, Variation and Evolution. A Primer in Coalescent Theory
-
-
HEIN, J.1
SCHIERUP, M.2
WIUF, C.3
-
14
-
-
33751026170
-
Insights into recombination from population genetic variation
-
HELLENTHAL, G., and M. STEPHENS, 2006 Insights into recombination from population genetic variation. Curr. Opin. Genet. Dev. 16: 565-572.
-
(2006)
Curr. Opin. Genet. Dev
, vol.16
, pp. 565-572
-
-
HELLENTHAL, G.1
STEPHENS, M.2
-
15
-
-
33847273741
-
msHOT: Modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots
-
HELLENTHAL, G., and M. STEPHENS, 2007 msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots. Bioinformatics 23: 520-521.
-
(2007)
Bioinformatics
, vol.23
, pp. 520-521
-
-
HELLENTHAL, G.1
STEPHENS, M.2
-
16
-
-
0028238444
-
High resolution localization of recombination hot spots using sperm typing
-
HUBERT, R., M. MACDONALD, J. GUSELLA and N. ARNHEIM, 1994 High resolution localization of recombination hot spots using sperm typing. Nat. Genet. 7: 420-424.
-
(1994)
Nat. Genet
, vol.7
, pp. 420-424
-
-
HUBERT, R.1
MACDONALD, M.2
GUSELLA, J.3
ARNHEIM, N.4
-
17
-
-
0001935493
-
Gene genealogies and the coalescent process
-
HUDSON, R. R., 1990 Gene genealogies and the coalescent process. Oxf. Surv. Evol. Biol. 7: 1-44.
-
(1990)
Oxf. Surv. Evol. Biol
, vol.7
, pp. 1-44
-
-
HUDSON, R.R.1
-
18
-
-
0035692320
-
Two-locus sampling distributions and their application
-
HUDSON, R. R., 2001 Two-locus sampling distributions and their application. Genetics 159: 1805-1817.
-
(2001)
Genetics
, vol.159
, pp. 1805-1817
-
-
HUDSON, R.R.1
-
19
-
-
0022211482
-
Statistical properties of the number of recombination events in the history of a sample of DNA sequences
-
HUDSON, R. R., and N. L. KAPLAN, 1985 Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111: 147-164.
-
(1985)
Genetics
, vol.111
, pp. 147-164
-
-
HUDSON, R.R.1
KAPLAN, N.L.2
-
20
-
-
0842310835
-
Intense and highly localized gene conversion activity in human meiotic crossover hot spots
-
JEFFREYS, A. J., and C. A. MAY, 2004 Intense and highly localized gene conversion activity in human meiotic crossover hot spots. Nat. Genet. 36: 151-156.
-
(2004)
Nat. Genet
, vol.36
, pp. 151-156
-
-
JEFFREYS, A.J.1
MAY, C.A.2
-
21
-
-
0034795550
-
Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
-
JEFFREYS, A. J., L. KAUPPI and R. NEUMANN, 2001 Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
-
(2001)
Nat. Genet
, vol.29
, pp. 217-222
-
-
JEFFREYS, A.J.1
KAUPPI, L.2
NEUMANN, R.3
-
22
-
-
20044377420
-
Human recombination hot spots hidden in regions of strong marker association
-
JEFFREYS, A. J., R. NEUMANN, M. PANAYI, S. MYERS and P. DONNELLY, 2005 Human recombination hot spots hidden in regions of strong marker association. Nat. Genet. 37: 601-606.
-
(2005)
Nat. Genet
, vol.37
, pp. 601-606
-
-
JEFFREYS, A.J.1
NEUMANN, R.2
PANAYI, M.3
MYERS, S.4
DONNELLY, P.5
-
23
-
-
3042742130
-
Where the crossovers are: Recombination distributions in mammals
-
KAUPPI, L., A. J. JEFFREYS and S. KEENEY, 2004 Where the crossovers are: recombination distributions in mammals. Nat. Rev. Genet. 5: 413-424.
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 413-424
-
-
KAUPPI, L.1
JEFFREYS, A.J.2
KEENEY, S.3
-
24
-
-
18544381909
-
A high-resolution recombination map of the human genome
-
KONG, A., D. F. GUDBJARTSSON, J. SAINZ, G. M. JONSDOTTIR, S. A. GUDJONSSON et al., 2002 A high-resolution recombination map of the human genome. Nat. Genet. 31: 241-247.
-
(2002)
Nat. Genet
, vol.31
, pp. 241-247
-
-
KONG, A.1
GUDBJARTSSON, D.F.2
SAINZ, J.3
JONSDOTTIR, G.M.4
GUDJONSSON, S.A.5
-
25
-
-
34247565933
-
Patterns of variation in DNA segments upstream of transcription start sites
-
LABUDA, D., C. LABBE, S. LANGLOIS, J.-F. LEFEBVRE, V. FREYTAG et al., 2007 Patterns of variation in DNA segments upstream of transcription start sites. Hum. Mutat. 28: 441-450.
-
(2007)
Hum. Mutat
, vol.28
, pp. 441-450
-
-
LABUDA, D.1
LABBE, C.2
LANGLOIS, S.3
LEFEBVRE, J.-F.4
FREYTAG, V.5
-
26
-
-
33748988999
-
A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data
-
LI, J., M. Q. ZHANG and X. ZHANG, 2006 A new method for detecting human recombination hotspots and its applications to the HapMap ENCODE data. Am. J. Hum. Genet. 79: 628-639.
-
(2006)
Am. J. Hum. Genet
, vol.79
, pp. 628-639
-
-
LI, J.1
ZHANG, M.Q.2
ZHANG, X.3
-
27
-
-
0347361674
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
-
LI, N., and M. STEPHENS, 2003 Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165: 2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
LI, N.1
STEPHENS, M.2
-
28
-
-
0036199914
-
A coalescent-based method for detecting and estimating recombination from gene sequences
-
MCVEAN, G., P. AWADALLA and P. FEARNHEAD, 2002 A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160: 1231-1241.
-
(2002)
Genetics
, vol.160
, pp. 1231-1241
-
-
MCVEAN, G.1
AWADALLA, P.2
FEARNHEAD, P.3
-
29
-
-
2142773942
-
The fine-scale structure of recombination rate variation in the human genome
-
MCVEAN, G. A., S. R. MYERS, S. HUNT, P. DELOUKAS, D. R. BENTLEY et al., 2004 The fine-scale structure of recombination rate variation in the human genome. Science 304: 581-584.
-
(2004)
Science
, vol.304
, pp. 581-584
-
-
MCVEAN, G.A.1
MYERS, S.R.2
HUNT, S.3
DELOUKAS, P.4
BENTLEY, D.R.5
-
30
-
-
26844482093
-
A fine-scale map of recombination rates and hotspots across the human genome
-
MYERS, S., L. BOTTOLO, C. FREEMAN, G. MCVEAN and P. DONNELLY, 2005 A fine-scale map of recombination rates and hotspots across the human genome. Science 310: 321-324.
-
(2005)
Science
, vol.310
, pp. 321-324
-
-
MYERS, S.1
BOTTOLO, L.2
FREEMAN, C.3
MCVEAN, G.4
DONNELLY, P.5
-
31
-
-
0037279717
-
Bounds on the minimum number of recombination events in a sample history
-
MYERS, S. R., and R. C. GRIFFITHS, 2003 Bounds on the minimum number of recombination events in a sample history. Genetics 163: 375-394.
-
(2003)
Genetics
, vol.163
, pp. 375-394
-
-
MYERS, S.R.1
GRIFFITHS, R.C.2
-
32
-
-
4143054668
-
Estimating the rate of gene conversion on human chromosome 21
-
PADHUKASAHASRAM, B., P. MARJORAM and M. NORDBORG, 2004 Estimating the rate of gene conversion on human chromosome 21. Am. J. Hum. Genet. 75: 386-397.
-
(2004)
Am. J. Hum. Genet
, vol.75
, pp. 386-397
-
-
PADHUKASAHASRAM, B.1
MARJORAM, P.2
NORDBORG, M.3
-
33
-
-
33751307421
-
Estimating recombination rates from single-nucleotide polymorphisms using summary statistics
-
PADHUKASAHASRAM, B., J. D. WALL, P. MARJORAM and M. NORDBORG, 2006 Estimating recombination rates from single-nucleotide polymorphisms using summary statistics. Genetics 174: 1517-1528.
-
(2006)
Genetics
, vol.174
, pp. 1517-1528
-
-
PADHUKASAHASRAM, B.1
WALL, J.D.2
MARJORAM, P.3
NORDBORG, M.4
-
34
-
-
0035345013
-
Meiotic recombination hot spots and cold spots
-
PETES, T. D., 2001 Meiotic recombination hot spots and cold spots. Nat. Rev. Genet. 2: 360-369.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 360-369
-
-
PETES, T.D.1
-
35
-
-
0035027837
-
Why is there so little intragenic linkage disequilibrium in humans?
-
PRZEWORSKI, M., and J. D. WALL, 2001 Why is there so little intragenic linkage disequilibrium in humans? Genet. Res. 77: 143-151.
-
(2001)
Genet. Res
, vol.77
, pp. 143-151
-
-
PRZEWORSKI, M.1
WALL, J.D.2
-
36
-
-
1942511512
-
Insights into recombination from patterns of linkage disequilibrium in humans
-
PTAK, S. E., K. VOELPEL and M. PRZEWORSKI, 2004 Insights into recombination from patterns of linkage disequilibrium in humans. Genetics 167: 387-397.
-
(2004)
Genetics
, vol.167
, pp. 387-397
-
-
PTAK, S.E.1
VOELPEL, K.2
PRZEWORSKI, M.3
-
37
-
-
16844377748
-
Fine-scale recombination patterns differ between chimpanzees and humans
-
PTAK, S. E., D. A. HINDS, K. KOEHLER, B. NICKEL, N. PATIL et al., 2005 Fine-scale recombination patterns differ between chimpanzees and humans. Nat. Genet. 37: 429-434.
-
(2005)
Nat. Genet
, vol.37
, pp. 429-434
-
-
PTAK, S.E.1
HINDS, D.A.2
KOEHLER, K.3
NICKEL, B.4
PATIL, N.5
-
38
-
-
0035837267
-
Linkage disequilibrium in the human genome
-
REICH, D. E., M. CARGILL, S. BOLK, J. IRELAND, P. C. SABETI et al., 2001 Linkage disequilibrium in the human genome. Nature 411: 199-204.
-
(2001)
Nature
, vol.411
, pp. 199-204
-
-
REICH, D.E.1
CARGILL, M.2
BOLK, S.3
IRELAND, J.4
SABETI, P.C.5
-
39
-
-
27544497650
-
Calibrating a coalescent simulation of human genome sequence variation
-
SCHAFFNER, S. F., C. FOO, S. GABRIEL, D. REICH, M. J. DALY et al., 2005 Calibrating a coalescent simulation of human genome sequence variation. Genome Res. 15: 1576-1583.
-
(2005)
Genome Res
, vol.15
, pp. 1576-1583
-
-
SCHAFFNER, S.F.1
FOO, C.2
GABRIEL, S.3
REICH, D.4
DALY, M.J.5
-
40
-
-
27544483722
-
Large-scale recombination rate patterns are conserved among human populations
-
SERRE, D., R. NADON and T. J. HUDSON, 2005 Large-scale recombination rate patterns are conserved among human populations. Genome Res. 15: 1547-1552.
-
(2005)
Genome Res
, vol.15
, pp. 1547-1552
-
-
SERRE, D.1
NADON, R.2
HUDSON, T.J.3
-
41
-
-
0022575101
-
On the frequency of undetectable recombination events
-
STEPHENS, J. C., 1986 On the frequency of undetectable recombination events. Genetics 112: 923-926.
-
(1986)
Genetics
, vol.112
, pp. 923-926
-
-
STEPHENS, J.C.1
-
42
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
STEPHENS, M., N. J. SMITH and P. DONNELLY, 2001 A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68: 978-989.
-
(2001)
Am. J. Hum. Genet
, vol.68
, pp. 978-989
-
-
STEPHENS, M.1
SMITH, N.J.2
DONNELLY, P.3
-
43
-
-
0344441428
-
Estimating recombination rates from population-genetic data
-
STUMPF, M. P., and G. A. MCVEAN, 2003 Estimating recombination rates from population-genetic data. Nat. Rev. Genet. 4: 959-968.
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 959-968
-
-
STUMPF, M.P.1
MCVEAN, G.A.2
-
44
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
TAJIMA, F.1
-
45
-
-
33644763127
-
Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster
-
THORNTON, K., and P. ANDOLFATTO, 2006 Approximate Bayesian inference reveals evidence for a recent, severe bottleneck in a Netherlands population of Drosophila melanogaster. Genetics 172: 1607-1619.
-
(2006)
Genetics
, vol.172
, pp. 1607-1619
-
-
THORNTON, K.1
ANDOLFATTO, P.2
-
46
-
-
33646948896
-
High resolution recombination patterns in a region of human chromosome 21 measured by sperm typing
-
TIEMANN-BOEGE, I., P. CALABRESE, D. COCHRAN, R. SOKOL and N. ARNHEIM, 2006 High resolution recombination patterns in a region of human chromosome 21 measured by sperm typing. PLoS Genet. 2: e70.
-
(2006)
PLoS Genet
, vol.2
-
-
TIEMANN-BOEGE, I.1
CALABRESE, P.2
COCHRAN, D.3
SOKOL, R.4
ARNHEIM, N.5
-
47
-
-
3843126537
-
Estimating recombination rates using three-site likelihoods
-
WALL, J. D., 2004 Estimating recombination rates using three-site likelihoods. Genetics 167: 1461-1473.
-
(2004)
Genetics
, vol.167
, pp. 1461-1473
-
-
WALL, J.D.1
-
48
-
-
0346101497
-
Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates
-
WALL, J. D., L. A. FRISSE, R. R. HUDSON and A. DI RIENZO, 2003 Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates. Am. J. Hum. Genet. 73: 1330-1340.
-
(2003)
Am. J. Hum. Genet
, vol.73
, pp. 1330-1340
-
-
WALL, J.D.1
FRISSE, L.A.2
HUDSON, R.R.3
DI RIENZO, A.4
-
49
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
-
(1975)
Theor. Popul. Biol
, vol.7
, pp. 256-276
-
-
WATTERSON, G.A.1
-
50
-
-
20144387806
-
Comparison of fine-scale recombination rates in humans and chimpanzees
-
WINCKLER, W., S. R. MYERS, D. J. RICHTER, R. C. ONOFRIO, G. J. MCDONALD et al., 2005 Comparison of fine-scale recombination rates in humans and chimpanzees. Science 308: 107-111.
-
(2005)
Science
, vol.308
, pp. 107-111
-
-
WINCKLER, W.1
MYERS, S.R.2
RICHTER, D.J.3
ONOFRIO, R.C.4
MCDONALD, G.J.5
-
51
-
-
0242407044
-
Haplotypes in the dystrophin DNA segment point to a mosaic origin of modern humans' diversity
-
ZIETKIEWICZ, E., V. YOTOVA, D. GEHL, T. WAMBACH, I. ARRIETA et al., 2003 Haplotypes in the dystrophin DNA segment point to a mosaic origin of modern humans' diversity. Am. J. Hum. Genet. 73: 994-1015.
-
(2003)
Am. J. Hum. Genet
, vol.73
, pp. 994-1015
-
-
ZIETKIEWICZ, E.1
YOTOVA, V.2
GEHL, D.3
WAMBACH, T.4
ARRIETA, I.5
|