메뉴 건너뛰기




Volumn 73, Issue 6, 2003, Pages 1330-1340

Comparative Linkage-Disequilibrium Analysis of the β-Globin Hotspot in Primates

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLOBIN;

EID: 0346101497     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1086/380311     Document Type: Article
Times cited : (90)

References (53)
  • 2
    • 0033828706 scopus 로고    scopus 로고
    • A genome-wide departure from the standard neutral model in natural populations of Drosophila
    • Andolfatto P, Przeworski M (2000) A genome-wide departure from the standard neutral model in natural populations of Drosophila. Genetics 156:257-268
    • (2000) Genetics , vol.156 , pp. 257-268
    • Andolfatto, P.1    Przeworski, M.2
  • 3
    • 85030920562 scopus 로고    scopus 로고
    • Linkage disequilibrium patterns across a recombination gradient in African Drosophila melanogaster
    • in press
    • Andolfatto P, Wall JD. Linkage disequilibrium patterns across a recombination gradient in African Drosophila melanogaster. Genetics (in press)
    • Genetics
    • Andolfatto, P.1    Wall, J.D.2
  • 5
    • 0003455528 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Ashburner M (1989) Drosophila: a laboratory handbook. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • (1989) Drosophila: A Laboratory Handbook
    • Ashburner, M.1
  • 6
    • 0034194230 scopus 로고    scopus 로고
    • Crossover breakpoint mapping identifies a subtelomeric hotspot for male meiotic recombination
    • Badge RM, Yardley J, Jeffreys AJ, Armour JA (2000) Crossover breakpoint mapping identifies a subtelomeric hotspot for male meiotic recombination. Hum Mol Genet 9:1239-1244
    • (2000) Hum Mol Genet , vol.9 , pp. 1239-1244
    • Badge, R.M.1    Yardley, J.2    Jeffreys, A.J.3    Armour, J.A.4
  • 7
    • 0031010660 scopus 로고    scopus 로고
    • Clustering of meiotic double-strand breaks on yeast chromosome III
    • Baudat F, Nicolas A (1997) Clustering of meiotic double-strand breaks on yeast chromosome III. Proc Natl Acad Sci USA 94:5213-5218
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5213-5218
    • Baudat, F.1    Nicolas, A.2
  • 8
    • 0034721721 scopus 로고    scopus 로고
    • Direct coupling between meiotic DNA replication and recombination initiation
    • Borde V, Goldman ASH, Lichten M (2000) Direct coupling between meiotic DNA replication and recombination initiation. Science 290:806-809
    • (2000) Science , vol.290 , pp. 806-809
    • Borde, V.1    Goldman, A.S.H.2    Lichten, M.3
  • 9
    • 0030791317 scopus 로고    scopus 로고
    • The hotspot conversion paradox and the evolution of meiotic recombination
    • Boulton A, Myers RS, Redfield RJ (1997) The hotspot conversion paradox and the evolution of meiotic recombination. Proc Natl Acad Sci USA 94:8058-8063
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 8058-8063
    • Boulton, A.1    Myers, R.S.2    Redfield, R.J.3
  • 10
    • 0032231877 scopus 로고    scopus 로고
    • Comprehensive human genetic maps: Individual and sex-specific variation in recombination
    • Broman KW, Murray JC, Sheffield VC, White RL, Weber JL (1998) Comprehensive human genetic maps: individual and sex-specific variation in recombination. Am J Hum Genet 63:861-869
    • (1998) Am J Hum Genet , vol.63 , pp. 861-869
    • Broman, K.W.1    Murray, J.C.2    Sheffield, V.C.3    White, R.L.4    Weber, J.L.5
  • 12
    • 0033150184 scopus 로고    scopus 로고
    • Evolution of a HOXB6 intergenic region within the great apes and humans
    • Deinard A, Kidd K (1999) Evolution of a HOXB6 intergenic region within the great apes and humans. J Hum Evol 36:687-703
    • (1999) J Hum Evol , vol.36 , pp. 687-703
    • Deinard, A.1    Kidd, K.2
  • 13
    • 0036098964 scopus 로고    scopus 로고
    • Polymorphism in the rhesus macaque (Macaca mulatta) NRAMP1 gene: Lack of an allelic association to tuberculosis susceptibility
    • Deinard AS, Lerche NW, Smith DG (2002) Polymorphism in the rhesus macaque (Macaca mulatta) NRAMP1 gene: lack of an allelic association to tuberculosis susceptibility. J Med Primatol 31:8-16
    • (2002) J Med Primatol , vol.31 , pp. 8-16
    • Deinard, A.S.1    Lerche, N.W.2    Smith, D.G.3
  • 14
    • 0034306545 scopus 로고    scopus 로고
    • Human-chimpanzee DNA sequence variation in the four major genes of the renin angiotensin system
    • Dufour C, Casane D, Denton D, Wickings J, Corvol P, Jeunemaitre X (2000) Human-chimpanzee DNA sequence variation in the four major genes of the renin angiotensin system. Genomics 69:14-26
    • (2000) Genomics , vol.69 , pp. 14-26
    • Dufour, C.1    Casane, D.2    Denton, D.3    Wickings, J.4    Corvol, P.5    Jeunemaitre, X.6
  • 15
    • 0035675042 scopus 로고    scopus 로고
    • Estimating recombination rates from population genetic data
    • Fearnhead P, Donnelly P (2001) Estimating recombination rates from population genetic data. Genetics 159:1299-1318
    • (2001) Genetics , vol.159 , pp. 1299-1318
    • Fearnhead, P.1    Donnelly, P.2
  • 16
    • 0034835229 scopus 로고    scopus 로고
    • Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels
    • Frisse L, Hudson RR, Bartoszewicz A, Wall JD, Donfack J, Di Rienzo A (2001) Gene conversion and different population histories may explain the contrast between polymorphism and linkage disequilibrium levels. Am J Hum Genet 69:831-843
    • (2001) Am J Hum Genet , vol.69 , pp. 831-843
    • Frisse, L.1    Hudson, R.R.2    Bartoszewicz, A.3    Wall, J.D.4    Donfack, J.5    Di Rienzo, A.6
  • 18
    • 0043122913 scopus 로고    scopus 로고
    • WEB-THERMODYN: Sequence analysis software for profiling DNA helical stability
    • Huang Y, Kowalski D (2003) WEB-THERMODYN: sequence analysis software for profiling DNA helical stability. Nucleic Acids Res 31(13):3819-3821
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3819-3821
    • Huang, Y.1    Kowalski, D.2
  • 19
    • 0028238444 scopus 로고
    • High resolution localization of recombination hot spots using sperm typing
    • Hubert R, MacDonald M, Gusella J, Arnheim N (1994) High resolution localization of recombination hot spots using sperm typing. Nat Genet 7:420-424
    • (1994) Nat Genet , vol.7 , pp. 420-424
    • Hubert, R.1    MacDonald, M.2    Gusella, J.3    Arnheim, N.4
  • 20
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson RR (1983) Properties of a neutral allele model with intragenic recombination. Theor Popul Biol 23:183-201
    • (1983) Theor Popul Biol , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 21
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • _ (2001) Two-locus sampling distributions and their application. Genetics 159:1805-1817
    • (2001) Genetics , vol.159 , pp. 1805-1817
  • 22
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson RR, Kaplan NL (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111:147-164
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 23
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys AJ, Kauppi L, Neumann R (2001) Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat Genet 29:217-222
    • (2001) Nat Genet , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 24
    • 0036649022 scopus 로고    scopus 로고
    • Reciprocal crossover asymmetry and meiotic drive in a human recombination hot spot
    • Jeffreys AJ, Neumann R (2002) Reciprocal crossover asymmetry and meiotic drive in a human recombination hot spot. Nat Genet 31:267-271
    • (2002) Nat Genet , vol.31 , pp. 267-271
    • Jeffreys, A.J.1    Neumann, R.2
  • 25
    • 0034701292 scopus 로고    scopus 로고
    • High resolution analysis of haplotype diversity and meiotic crossover in the human TAP2 recombination hotspot
    • Jeffreys AJ, Ritchie A, Neumann R (2000) High resolution analysis of haplotype diversity and meiotic crossover in the human TAP2 recombination hotspot. Hum Mol Genet 9:725-33
    • (2000) Hum Mol Genet , vol.9 , pp. 725-733
    • Jeffreys, A.J.1    Ritchie, A.2    Neumann, R.3
  • 26
    • 0344436038 scopus 로고    scopus 로고
    • DNA sequence variation in a non-coding region of low recombination on the human X chromosome
    • Kaessmann H, Heissig F, von Haeseler A, Pääbo S (1999) DNA sequence variation in a non-coding region of low recombination on the human X chromosome. Nat Genet 22:78-81
    • (1999) Nat Genet , vol.22 , pp. 78-81
    • Kaessmann, H.1    Heissig, F.2    Von Haeseler, A.3    Pääbo, S.4
  • 27
    • 0027749608 scopus 로고
    • Replication structure of the human beta-globin gene domain
    • Kitsberg D, Selig S, Keshet I, Cedar H (1993) Replication structure of the human beta-globin gene domain. Nature 366:588-590
    • (1993) Nature , vol.366 , pp. 588-590
    • Kitsberg, D.1    Selig, S.2    Keshet, I.3    Cedar, H.4
  • 29
    • 0023759044 scopus 로고
    • Amplification and analysis of DNA sequences in single human sperm and diploid cells
    • Li HH, Gyllensten UB, Cui XF, Saiki RK, Erlich HA, Arnheim N (1988) Amplification and analysis of DNA sequences in single human sperm and diploid cells. Nature 335:414-417
    • (1988) Nature , vol.335 , pp. 414-417
    • Li, H.H.1    Gyllensten, U.B.2    Cui, X.F.3    Saiki, R.K.4    Erlich, H.A.5    Arnheim, N.6
  • 30
    • 85030921752 scopus 로고    scopus 로고
    • Modelling linkage disequilibrium, and identifying recombination hotspots using SNP data
    • in press
    • Li N, Stephens M. Modelling linkage disequilibrium, and identifying recombination hotspots using SNP data. Genetics (in press)
    • Genetics
    • Li, N.1    Stephens, M.2
  • 31
    • 0033929751 scopus 로고    scopus 로고
    • Evidence for heterogeneity in recombination in the human pseudoautosomal region: High resolution analysis by sperm typing and radiation-hybrid mapping
    • Lien S, Szyda J, Schechinger B, Rappold G, Arnheim N (2000) Evidence for heterogeneity in recombination in the human pseudoautosomal region: high resolution analysis by sperm typing and radiation-hybrid mapping. Am J Hum Genet 66:557-566
    • (2000) Am J Hum Genet , vol.66 , pp. 557-566
    • Lien, S.1    Szyda, J.2    Schechinger, B.3    Rappold, G.4    Arnheim, N.5
  • 32
    • 0036648248 scopus 로고    scopus 로고
    • Crossover clustering and rapid decay of linkage disequilibrium in the Xp/Yp pseudoautosomal gene SHOX
    • May CA, Shone AC, Kalaydjieva L, Sajantila A, Jeffreys AJ (2002) Crossover clustering and rapid decay of linkage disequilibrium in the Xp/Yp pseudoautosomal gene SHOX. Nat Genet 31:272-275
    • (2002) Nat Genet , vol.31 , pp. 272-275
    • May, C.A.1    Shone, A.C.2    Kalaydjieva, L.3    Sajantila, A.4    Jeffreys, A.J.5
  • 33
    • 0026548222 scopus 로고
    • DNA helical stability accounts for mutational defects in a yeast replication origin
    • Natale DA, Schubert AE, Kowalski D (1992) DNA helical stability accounts for mutational defects in a yeast replication origin. Proc Natl Acad Sci USA 89:2654-2658
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 2654-2658
    • Natale, D.A.1    Schubert, A.E.2    Kowalski, D.3
  • 34
    • 0030872838 scopus 로고    scopus 로고
    • PolyPhred: Automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing
    • Nickerson DA, Tobe VO, Taylor SL (1997) PolyPhred: automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. Nucleic Acids Res 25:2745-2751
    • (1997) Nucleic Acids Res , vol.25 , pp. 2745-2751
    • Nickerson, D.A.1    Tobe, V.O.2    Taylor, S.L.3
  • 35
    • 0024476859 scopus 로고
    • An initiation site for meiotic gene conversion in the yeast Saccharomyces cerevisiae
    • Nicolas A, Treco D, Schultes NP, Szostak JW (1989) An initiation site for meiotic gene conversion in the yeast Saccharomyces cerevisiae. Nature 338:35-39
    • (1989) Nature , vol.338 , pp. 35-39
    • Nicolas, A.1    Treco, D.2    Schultes, N.P.3    Szostak, J.W.4
  • 36
    • 0035345013 scopus 로고    scopus 로고
    • Meiotic recombination hot spots and cold spots
    • Petes TD (2001) Meiotic recombination hot spots and cold spots. Nat Rev Genet 2:360-369
    • (2001) Nat Rev Genet , vol.2 , pp. 360-369
    • Petes, T.D.1
  • 37
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: Models and data
    • Pritchard JK, Przeworski M (2001) Linkage disequilibrium in humans: models and data. Am J Hum Genet 69:1-14
    • (2001) Am J Hum Genet , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 38
    • 0035027837 scopus 로고    scopus 로고
    • Why is there so little intragenic linkage disequilibrium in humans?
    • Przeworski M, Wall JD (2001) Why is there so little intragenic linkage disequilibrium in humans? Genet Res 77:143-151
    • (2001) Genet Res , vol.77 , pp. 143-151
    • Przeworski, M.1    Wall, J.D.2
  • 39
    • 0027274053 scopus 로고
    • Stimulation of meiotic recombination in yeast by an ARS element
    • Rattray AJ, Symington LS (1993) Stimulation of meiotic recombination in yeast by an ARS element. Genetics 134:175-188
    • (1993) Genetics , vol.134 , pp. 175-188
    • Rattray, A.J.1    Symington, L.S.2
  • 41
    • 0034898088 scopus 로고    scopus 로고
    • Comparison of DNA and protein polymorphisms between humans and chimpanzees
    • Satta Y (2001) Comparison of DNA and protein polymorphisms between humans and chimpanzees. Genes Genet Syst 76:159-168
    • (2001) Genes Genet Syst , vol.76 , pp. 159-168
    • Satta, Y.1
  • 42
    • 0036471845 scopus 로고    scopus 로고
    • Direct measurement of the male recombination fraction in the human β-globin hot spot
    • Schneider JA, Peto TE, Boone RA, Boyce AJ, Clegg JB (2002) Direct measurement of the male recombination fraction in the human β-globin hot spot. Hum Mol Genet 11:207-215
    • (2002) Hum Mol Genet , vol.11 , pp. 207-215
    • Schneider, J.A.1    Peto, T.E.2    Boone, R.A.3    Boyce, A.J.4    Clegg, J.B.5
  • 43
    • 0032403420 scopus 로고    scopus 로고
    • Recombination breakpoints in the human β-globin gene cluster
    • Smith RA, Ho PJ, Clegg JB, Kidd JR, Thein SL (1998) Recombination breakpoints in the human β-globin gene cluster. Blood 92:4415-4421
    • (1998) Blood , vol.92 , pp. 4415-4421
    • Smith, R.A.1    Ho, P.J.2    Clegg, J.B.3    Kidd, J.R.4    Thein, S.L.5
  • 44
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith NJ, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989
    • (2001) Am J Hum Genet , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 45
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 46
    • 0024313579 scopus 로고    scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • _ Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
    • Genetics , vol.123 , pp. 585-595
  • 47
    • 0030068317 scopus 로고    scopus 로고
    • Differences in cross-over frequency and distribution among three sibling species of Drosophila
    • True JR, Mercer JM, Laurie CC (1996) Differences in cross-over frequency and distribution among three sibling species of Drosophila. Genetics 142:507-523
    • (1996) Genetics , vol.142 , pp. 507-523
    • True, J.R.1    Mercer, J.M.2    Laurie, C.C.3
  • 48
    • 0033955443 scopus 로고    scopus 로고
    • A comparison of estimators of the population recombination rate
    • Wall JD (2000) A comparison of estimators of the population recombination rate. Mol Biol Evol 17:156-163
    • (2000) Mol Biol Evol , vol.17 , pp. 156-163
    • Wall, J.D.1
  • 49
    • 0035546130 scopus 로고    scopus 로고
    • Insights from linked single nucleotide polymorphisms: What we can learn from linkage disequilibrium
    • _ (2001) Insights from linked single nucleotide polymorphisms: what we can learn from linkage disequilibrium. Curr Opin Genet Dev 11:647-651
    • (2001) Curr Opin Genet Dev , vol.11 , pp. 647-651
  • 50
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7:256-276
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 51
    • 0033907068 scopus 로고    scopus 로고
    • A coalescence approach to gene conversion
    • Wiuf C (2000) A coalescence approach to gene conversion. Theor Popul Biol 57:357-367
    • (2000) Theor Popul Biol , vol.57 , pp. 357-367
    • Wiuf, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.