Distribution of meiotic recombination sites

Trends in Genetics

Volumn 19, Issue 9, 2003, Pages 514-522

  De Massy, Bernard ^a  

^a INSTITUTE OF HUMAN GENETICS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GENE CONVERSION; MAMMAL; MEIOSIS; MOLECULAR MODEL; NONHUMAN; PRIORITY JOURNAL; REVIEW; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES POMBE; YEAST;

MAMMALIA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES; SCHIZOSACCHAROMYCES POMBE;

EID: 0042830294     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-9525(03)00201-4     Document Type: Review

References (83)

1. Szostak J.W., et al. The double-strand-break repair model for recombination. Cell. 33:1983;25-35.
2. Pâques F., Haber J.E. Multiple pathways of recombination induced by double-strand breaks in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 63:1999;349-404.
3. Belmaaza A., Chartrand P. One-sided invasion events in homologous recombination at double-strand breaks. Mutat. Res. 314:1994;199-208.
4. Buard J., et al. Meiotic recombination and flanking marker exchange at the highly unstable human minisatellite CEB1 (D2S90). Am. J. Hum. Genet. 67:2000;333-344.
5. Allers T., Lichten M. Differential timing and control of noncrossover and crossover recombination during meiosis. Cell. 106:2001;47-57.
6. Hunter N., Kleckner N. The single-end invasion: an asymmetric intermediate at the double-strand break to double-holliday junction transition of meiotic recombination. PG. Cell. 106:2001;59-70.
7. Keeney S. Mechanism and control of meiotic recombination initiation. Curr. Top. Dev. Biol. 52:2001;1-53.
8. Blat Y., Kleckner N. Cohesins bind to preferential sites along yeast chromosome III, with differential regulation along arms versus the centric region. Cell. 98:1999;249-259.
9. Blat Y., et al. Physical and Functional Interactions among Basic Chromosome Organizational Features Govern Early Steps of Meiotic Chiasma Formation. Cell. 111:2002;791-802.
10. Baudat F., Nicolas A. Clustering of meiotic double-strand breaks on yeast chromosome III. Proc. Natl. Acad. Sci. U. S. A. 94:1997;5213-5218.
11. Gerton J.L., et al. Inaugural article: global mapping of meiotic recombination hotspots and coldspots in the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U. S. A. 97:2000;11383-11390.
12. Nicolas A. Relationship between transcription and initiation of meiotic recombination: toward chromatin accessibility. Proc. Natl. Acad. Sci. U. S. A. 95:1998;87-89.
13. Petes T.D. Meiotic recombination hot spots and cold spots. Nat. Rev. Genet. 2:2001;360-369.
14. Davis L., Smith G.R. Meiotic recombination and chromosome segregation in Schizosaccharomyces pombe. Proc. Natl. Acad. Sci. U. S. A. 98:2001;8395-8402.
15. Pecina A., et al. Targeted stimulation of meiotic recombination. Cell. 111:2002;173-184.
16. Hilliker A.J., et al. Meiotic gene conversion tract length distribution within the rosy locus of Drosophila melanogaster. Genetics. 137:1994;1019-1026.
17. Porter S.E., et al. Genetic evidence that the meiotic recombination hotspot at the HIS4 locus of Saccharomyces cerevisiae does not represent a site for a symmetrically processed double-strand break. Genetics. 134:1993;5-19.
18. Schultes N.P., Szostak J.W. Decreasing gradients of gene conversion on both sides of the initiation site for meiotic recombination at the ARG4 locus in yeast. Genetics. 126:1990;813-822.
19. Grimm C., et al. M26 recombinational hotspot and physical conversion tract analysis in the ade6 gene of Schizosaccharomyces pombe. Genetics. 136:1994;41-51.
20. Bowring F.J., Catcheside D.E. Analysis of conversion tracts associated with recombination events at the am locus of Neurospora crassa. Curr. Genet. 34:1998;43-49.
21. Yeadon P.J., Catcheside D.E. Long, interrupted conversion tracts initiated by cog in Neurospora crassa. Genetics. 148:1998;113-122.
22. Langin T., et al. Reciprocal exchanges instigated by large heterologies in the b2 gene of ascobolus are not associated with long adjacent hybrid DNA stretches. Genetics. 119:1988;329-336.
23. Symington L.S., Petes T.D. Expansions and contractions of the genetic map relative to the physical map of yeast chromosome III. Mol. Cell. Biol. 8:1988;595-604.
24. Symington L.S., et al. Genetic analysis of a meiotic recombination hotspot on chromosome III of Saccharomyces cerevisiae. Genetics. 128:1991;717-727.
25. Wu T.-C., Lichten M. Meiosis-induced double-strand break sites determined by yeast chromatin structure. Science. 263:1994;515-518.
26. Borts R.H., Haber J.E. Meiotic recombination in yeast: alteration by multiple heterozygosities. Science. 237:1987;1459-1465.
27. Borts R.H., Haber J.E. Length and distribution of meiotic gene conversion tracts and crossovers in Saccharomyces cerevisiae. Genetics. 123:1989;69-80.
28. Young J.A., et al. Meiotic recombination remote from prominent DNA break sites in S. pombe. Mol. Cell. 9:2002;253-263.
29. Smith G.R. Homologous recombination near and far from DNA breaks: alternative roles and contrasting views. Annu. Rev. Genet. 35:2001;243-274.
30. Jeffreys A.J., et al. High resolution analysis of haplotype diversity and meiotic crossover in the human TAP2 recombination hotspot. Hum. Mol. Genet. 9:2000;725-733.
31. Isobe T., et al. Molecular characterization of the Pb recombination hotspot in the mouse major Histocompatibility Complex class II region. Genomics. 80:2002;229-235.
32. Jeffreys A.J., et al. High-resolution mapping of crossovers in human sperm defines a minisatellite-associated recombination hotspot. Mol. Cell. 2:1998;267-273.
33. Jeffreys A.J., et al. Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29:2001;217-222.
34. Jeffreys A.J., Neumann R. Reciprocal crossover asymmetry and meiotic drive in a human recombination hot spot. Nat. Genet. 31:2002;267-271.
35. Guillon H., De Massy B. An initiation site for meiotic crossing-over and gene conversion in the mouse. Nat. Genet. 32:2002;296-299.
36. Borde V., et al. Use of a recombination reporter insert to define meiotic recombination domains on chromosome III of Saccharomyces cerevisiae. Mol. Cell. Biol. 19:1999;4832-4842.
37. Cullen M., et al. High-resolution patterns of meiotic recombination across the human major histocompatibility complex. Am. J. Hum. Genet. 71:2002;759-776.
38. Kong A., et al. A high-resolution recombination map of the human genome. Nat. Genet. 31:2002;241-247.
39. Nachman M.W., Churchill G.A. Heterogeneity in rates of recombination across the mouse genome. Genetics. 142:1996;537-548.
40. Broman K.W., et al. Comprehensive human genetic maps: individual and sex-specific variation in recombination. Am. J. Hum. Genet. 63:1998;861-869.
41. Yu K., Feingold E. Estimating the frequency distribution of crossovers during meiosis from recombination data. Biometrics. 57:2001;427-434.
42. Lawrie N.M., et al. Chiasma frequency, distribution and interference maps of mouse autosomes. Chromosoma. 104:1995;308-314.
43. Barlow A.L., Hulten M.A. Crossing over analysis at pachytene in man. Eur. J. Hum. Genet. 6:1998;350-358.
44. Petes T.D., Merker J.D. Context dependence of meiotic recombination hotspots in yeast. The relationship between recombination activity of a reporter construct and base composition. Genetics. 162:2002;2049-2052.
45. Eisenbarth I., et al. An isochore transition in the NF1 gene region coincides with a switch in the extent of linkage disequilibrium. Am. J. Hum. Genet. 67:2000;873-880.
46. Eisenbarth I., et al. Long-range sequence composition mirrors linkage disequilibrium pattern in a 1.13 Mb region of human chromosome 22. Hum. Mol. Genet. 10:2001;2833-2839.
47. Phillips M.S., et al. Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat. Genet. 33:2003;382-387.
48. Yu A., et al. Comparison of human genetic and sequence-based physical maps. Nature. 409:2001;951-953.
49. Fullerton S.M., et al. Local rates of recombination are positively correlated with GC content in the human genome. Mol. Biol. Evol. 18:2001;1139-1142.
50. Plug A.W., et al. Presynaptic association of Rad51 protein with selected sites in meiotic chromatin. Proc. Natl. Acad. Sci. U. S. A. 93:1996;5920-5924.
51. Bernardi G. Isochores and the evolutionary genomics of vertebrates. Gene. 241:2000;3-17.
52. Tenzen T., et al. Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex. Mol. Cell. Biol. 17:1997;4043-4050.
53. Jabbari K., Bernardi G. CpG doublets, CpG islands and Alu repeats in long human DNA sequences from different isochore families. Gene. 224:1998;123-127.
54. Eyre-Walker A., Hurst L.D. The evolution of isochores. Nat. Rev. Genet. 2:2001;549-555.
55. Birdsell J.A. Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution. Mol. Biol. Evol. 19:2002;1181-1197.
56. Perry J., Ashworth A. Evolutionary rate of a gene affected by chromosomal position. Curr. Biol. 9:1999;987-989.
57. Wolfe K.H., et al. Mutation rates differ among regions of the mammalian genome. Nature. 337:1989;283-285.
58. Galtier N., et al. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics. 159:2001;907-911.
59. Boulton A., et al. The hotspot conversion paradox and the evolution of meiotic recombination. Proc. Natl. Acad. Sci. U. S. A. 94:1997;8058-8063.
60. Nicolas A., et al. An initiation site for meiotic gene conversion in the yeast Saccharomyces cerevisiae. Nature. 338:1989;35-39.
61. Malone R.E., et al. A meiotic gene conversion gradient opposite to the direction of transcription. Nature. 359:1992;154-155.
62. White M.A., et al. A promoter deletion reduces the rate of mitotic, but not meiotic, recombination at the HIS4 locus in yeast. Curr. Genet. 21:1992;109-116.
63. Gyapay G., et al. The 1993-94 Genethon human genetic linkage map. Nat. Genet. 7:1994;246-339.
64. Blake J.A., et al. The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse. The Mouse Genome Database Group. Nucleic Acids Res. 28:2000;108-111.
65. Smith R.A., et al. Recombination breakpoints in the human beta-globin gene cluster. Blood. 92:1998;4415-4421.
66. Schneider J.A., et al. Direct measurement of the male recombination fraction in the human beta- globin hot spot. Hum. Mol. Genet. 11:2002;207-215.
67. Chakravarti A., et al. Nonuniform recombination within the human beta-globin gene cluster. Am. J. Hum. Genet. 36:1984;1239-1258.
68. Yip S.P., et al. Mapping recombination hotspots in human phosphoglucomutase (PGM1). Hum. Mol. Genet. 8:1999;1699-1706.
69. Han L.L., et al. Unequal exchange at the charcot-marie-tooth disease type 1A recombination hot-spot is not elevated above the genome average rate. Hum. Mol. Genet. 9:2000;1881-1889.
70. May C.A., et al. Crossover clustering and rapid decay of linkage disequilibrium in the Xp/Yp pseudoautosomal gene SHOX. Nat. Genet. 31:2002;272-275.
71. Khambata S., et al. Ea recombinational hot spot in the mouse major histocompatibility complex maps to the fourth intron of the Ea gene. Genome Res. 6:1996;195-201.
72. Kobori J.A., et al. Molecular analysis of the hotspot of recombination in the murine major histocompatibility complex. Science. 234:1986;173-179.
73. Zimmerer E.J., Passmore H.C. Structural and genetic properties of the Eb recombinational hotspot in the mouse. Immunogenetics. 33:1991;132-140.
74. Shiroishi T., et al. Recombinational hotspot specific to female meiosis in the mouse major histocompatibility complex. Immunogenetics. 31:1990;79-88.
75. Shiroishi T., et al. Genetic control of sex-dependent meiotic recombination in the major histocompatibility complex of the mouse. EMBO J. 10:1991;681-686.
76. Snoek M., et al. Molecular analysis of the major MHC recombinational hot spot located within the G7c gene of the murine class III region that is involved in disease susceptibility. J. Immunol. 160:1998;266-272.
77. Sun H., et al. Extensive 3(-overhanging, single-stranded DNA associated with the meiosis-specific double-strand breaks at the arg4 recombination initiation site. Cell. 64:1991;1155-1161.
78. Collins I., Newlon C.S. Meiosis-specific formation of joint DNA molecules containing sequences from homologous chromosomes. Cell. 76:1994;65-75.
79. Schwacha A., Kleckner N. Identification of joint molecules that form frequently between homologs but rarely between sister chromatids during yeast meiosis. Cell. 76:1994;51-63.
80. Schwacha A., Kleckner N. Identification of double Holliday junctions as intermediates in meiotic recombination. Cell. 83:1995;783-791.
81. Allers T., Lichten M. Intermediates of yeast meiotic recombination contain heteroduplex dna. Mol. Cell. 8:2001;225-231.
82. Alani E., et al. Interaction between mismatch repair and genetic recombination in Saccharomyces cerevisiae. Genetics. 137:1994;19-39.
83. Cohen P.E., Pollard J.W. Regulation of meiotic recombination and prophase I progression in mammals. BioEssays. 23:2001;996-1009.