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Neighbor-list reduction: Optimization for computation of molecular van der Waals and solvent-accessible surface areas
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Weiser, J.; Weiser, A. A.; Shenkin, P. S.; Still, W. C. Neighbor-List Reduction: Optimization for Computation of Molecular van der Waals and Solvent-Accessible Surface Areas. J. Comput. Chem. 1998, 19, 797-808.
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Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO)
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Fast, approximate algorithm for detection of solvent-inaccessible atoms
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Simulations of the B-DNA molecular dynamics of (Cgcgaattcgcg(2 and D(Gcgcgcgcgc)2: An analysis of the role of initial geometry and a comparison of united and all-atom models
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Rao, S. N.; Kollman, P. Simulations of the B-DNA Molecular Dynamics of (Cgcgaattcgcg(2 and D(Gcgcgcgcgc)2: An Analysis of the Role of Initial Geometry and a Comparison of United and All-Atom Models. Biopolymers 1990, 29, 517-532.
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Solvation free energies calculated using the GB/SA model: Sensitivity of results on charge sets, protocols and force fields
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93
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Three-dimensional solution structure of the HIV-1 protease complexed with Dmp323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy
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Yamazaki, T.; Hinck, A. P.; Wang, Y.-X.; Nicholson, L. K.; Torchia, D. A.; Wingfield, P.; Stahl, S. J.; Kaufman, J. D.; Chang, C.-H.; Domaille, P. J.; Lam, P. Y. S. Three-Dimensional Solution Structure of the HIV-1 Protease Complexed with Dmp323, a Novel Cyclic Urea-Type Inhibitor, Determined by Nuclear Magnetic Resonance Spectroscopy. Protein Sci. 1996, 5, 495-506.
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Chang, C.-H.9
Domaille, P.J.10
Lam, P.Y.S.11
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94
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4544256470
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note
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The contact criteria is defined as C = (distance between atomic centers)(radius atom 1 + radius atom 2)). Bad contacts were those with a ratio less than 0.89 Å.
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-
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95
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4544273643
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unpublished results
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Parish, C. unpublished results.
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Parish, C.1
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