Erratum: Unfolded protein and peptide dynamics investigated with single-molecule FRET and correlation spectroscopy from picoseconds to seconds (Journal of Physical Chemistry B (2008) 112:19 (6137-6146) DOI: 10.1021/jp076971j);Unfolded protein and peptide dynamics investigated with single-molecule FRET and correlation spectroscopy from picoseconds to seconds

Journal of Physical Chemistry B

Volumn 112, Issue 19, 2008, Pages 6137-6146

  Nettels, Daniel ^a   Hoffmann, Armin ^a   Schuler, Benjamin ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

CHAINS; DIFFUSION; DYNAMICS; ENERGY TRANSFER; FLUORESCENCE SPECTROSCOPY; FORSTER RESONANCE ENERGY TRANSFER; MOLECULES; PEPTIDES; POLYPEPTIDES; SPECTROSCOPIC ANALYSIS; TIME MEASUREMENT;

BIOMOLECULAR DYNAMICS; CORRELATION SPECTROSCOPY; CROSS-CORRELATION FUNCTION; FLUORESCENCE CORRELATION SPECTROSCOPY; POTENTIAL OF MEAN FORCE; SINGLE-MOLECULE FLUORESCENCE SPECTROSCOPY; SINGLE-MOLECULE FRETS; SINGLE-MOLECULE PHOTONS;

CORRELATION METHODS;

PEPTIDE; PROTEIN;

ARTICLE; CHEMISTRY; FLUORESCENCE RESONANCE ENERGY TRANSFER; METABOLISM; METHODOLOGY; PROTEIN FOLDING; SPECTROFLUOROMETRY; THERMODYNAMICS; TIME;

FLUORESCENCE RESONANCE ENERGY TRANSFER; PEPTIDES; PROTEIN FOLDING; PROTEINS; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS; TIME FACTORS;

EID: 44949240469     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp303954v     Document Type: Erratum

References (86)

1. Millett, I. S.; Doniach, S.; Plaxco, K. W. Adv. Protein Chem. 2002, 62, 241.
2. Kohn, J. E.; Millett, I. S.; Jacob, J.; Zagrovic, B.; Dillon, T. M.; Cingel, N.; Dothager, R. S.; Seifert, S.; Thiyagarajan, P.; Sosnick, T. R.; Hasan, M. Z.; Pande, V. S.; Ruczinski, I.; Doniach, S.; Plaxco, K. W. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 12491.
3. Vendruscolo, M. Curr. Opin. Struct. Biol. 2007, 17, 15.
4. Mittag, T.; Forman-Kay, J. D. Curr. Opin. Struct. Biol. 2007, 17, 3.
5. Shortle, D. R. Curr. Opin. Struct. Biol. 1996, 6, 24.
6. Dyson, H. J.; Wright, P. E. Chem. Rev. 2004, 104, 3607.
7. Bieri, O.; Wirz, J.; Hellrung, B.; Schutkowski, M.; Drewello, M.; Kiefhaber, T. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 9597.
8. Lapidus, L. J.; Eaton, W. A.; Hofrichter, J. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 7220.
9. Hudgins, R. R.; Huang, F.; Gramlich, G.; Nau, W. M. J. Am. Chem. Soc. 2002, 124, 556.
10. Neuweiler, H.; Schulz, A.; Böhmer, M.; Enderlein, J.; Sauer, M. J. Am. Chem. Soc. 2003, 125, 5324.
11. Jia, Y. W.; Talaga, D. S.; Lau, W. L.; Lu, H. S. M.; DeGrado, W. F.; Hochstrasser, R. M. Chem. Phys. 1999, 247, 69.
12. Haran, G. J. Phy.: Condens. Matter 2003, 15, R1291.
13. Schuler, B. ChemPhysChem 2005, 6, 1206.
14. Michalet, X.; Weiss, S.; Jager, M. Chem. Rev. 2006, 106, 1785.
15. Schuler, B.; Eaton, W. A. Curr. Opin. Struct. Biol. 2008, 18, 16.
16. Ha, T.; Enderle, T.; Ogletree, D. F.; Chemla, D. S.; Selvin, P. R.; Weiss, S. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 6264.
17. Schuler, B.; Lipman, E. A.; Steinbach, P. J.; Kumke, M.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 2754.
18. Hoffmann, A.; Kane, A.; Nettels, D.; Hertzog, D. E.; Baumgärtel, P.; Lengefeld, J.; Reichardt, G.; Horsley, D. A.; Seckler, R.; Bakajin, O.; Schuler, B. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 105.
19. Laurence, T. A.; Kong, X. X.; Jäger, M.; Weiss, S. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 17348.
20. Neuweiler, H.; Doose, S.; Sauer, M. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 16650.
21. Nettels, D.; Gopich, I. V.; Hoffmann, A.; Schuler, B. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 2655.
22. Perl, D.; Welker, C.; Schindler, T.; Schröder, K.; Marahiel, M. A.; Jaenicke, R.; Schmid, F. X. Nat. Struct. Biol. 1998, 5, 229.
23. Wassenberg, D.; Welker, C.; Jaenicke, R. J. Mol. Biol. 1999, 289, 187.
24. Schuler, B.; Lipman, E. A.; Eaton, W. A. Nature 2002, 419, 743.
25. Schuler, B.; Kremer, W.; Kalbitzer, H. R.; Jaenicke, R. Biochemistry 2002, 41, 11670.
26. Lipman, E. A.; Schuler, B.; Bakajin, O.; Eaton, W. A. Science 2003, 301, 1233.
27. Kurtsiefer, C.; Zarda, P.; Mayer, S.; Weinfurter, H. J. Mod. Opt. 2001, 48, 2039.
28. Berglund, A. J.; Doherty, A. C.; Mabuchi, H. Phys. Rev. Lett. 2002, 89, 068101.
29. Wang, Z. S.; Makarov, D. E. J. Phys. Chem. B 2003, 107, 5617.
30. Rigler, R.; Elson, E. S. Flourescence Correlation Spectroscopy: Theory and Applications; Springer: Berlin, Germany, 2001.
31. Hübner, C. G.; Zumofen, G.; Renn, A.; Herrmann, A.; Müllen, K.; Basché, T. Phys. Rev. Lett. 2003, 91.
32. De Schryver, F. C.; Vosch, T.; Cotlet, M.; Van, der Auweraer, M.; Müllen, K.; Hofkens, J. Ace. Chem. Res. 2005, 38, 514.
33. Bradforth, S. E.; Jinenez, R.; Vanmourik, F.; Vangrondelle, R.; Fleming, G. R. J. Phys. Chem. 1995, 99, 16179.
34. Kapusta, P.; Erdmann, R.; Ortmann, U.; Wahl, M. J. Fluoresc. 2003, 13, 179.
35. Lakowicz, J. R. Principles of Fluorescence Spectroscopy, 2nd ed.; Kluwer Academic/Plenum Publishers: New York, 1999.
36. Lipari, G.; Szabo, A. Biophys. J. 1980, 30, 489.
37. Hanbury Brown, R.; Twiss, R. Q. Nature 1956, 177, 27.
38. Ehrenberg, M.; Rigler, R. Chem. Phys. 1974, 4, 390.
39. Fleury, L.; Segura, J. M.; Zumofen, G.; Hecht, B.; Wild, U. P. Phys. Rev. Lett. 2000, 84, 1148.
40. Tinnefeld, P.; Müller, C.; Sauer, M. Chem. Phys. Lett. 2001, 345, 252.
41. Weston, K. D.; Dyck, M.; Tinnefeld, P.; Müller, C.; Herten, D. P.; Sauer, M. Anal. Chem. 2002, 74, 5342.
42. Hofkens, J.; Cotlet, M.; Vosch, T.; Tinnefeld, P.; Weston, K. D.; Ego, C.; Grimsdale, A.; Mullen, K.; Beljonne, D.; Bredas, J. L.; Jordens, S.; Schweitzer, G.; Sauer, M.; De Schryver, F. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 13146.
43. Nettels, D.; Schuler, B. IEEE J. Sel. Top. Quant. Electron. 2007, 13, 990.
44. Felekyan, S.; Kühnemut, R.; Kudryavtsev, V.; Sandhagen, C.; Becker, W.; Seidel, C. A. M. Rev. Sci. Instrum. 2005, 76, 083104.
45. Wahl, M.; Rahn, H. J.; Gregor, I.; Erdmann, R.; Enderlein, J. Rev. Sci. Instrum. 2007, 78, 033106.
46. Gopich, I. V.; Szabo, A. J. Chem. Phys. 2006, 124, 154712.
47. Mets, Ü. Antibunching and Rotational Diffusion in FCS. In Fluorescence Correlation Spectroscopy; Elson, E. S., Rigler, R., Eds.; Springer-Verlag: Berlin, Germany, 2001.
48. Haas, E.; Katchalskikatzir, E.; Steinberg, I. Z. Biopolymers 1978, 17, 11.
49. Möglich, A.; Joder, K.; Kiefhaber, T. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 12394.
50. Eggeling, C.; Kask, P.; Winkler, D.; Jäger, S. Biophys. J. 2005, 89, 605.
51. Bryngelson, J. D.; Onuchic, J. N.; Socci, N. D.; Wolynes, P. G. Proteins 1995, 27, 167.
52. Socci, N. D.; Onuchic, J. N.; Wolynes, P. G. J. Chem. Phys. 1996, 104, 5860.
53. Kubelka, J.; Hofrichter, J.; Eaton, W. A. Curr. Opin. Struct. Biol. 2004, 14, 76.
54. Kubelka, J.; Chiu, T. K.; Davies, D. R.; Eaton, W. A.; Hofrichter, J. J. Mol. Biol. 2006, 359, 546.
55. Hagen, S. J.; Hofrichter, J.; Szabo, A.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 11615.
56. Yang, W. Y.; Gruebele, M. Nature 2003, 423, 193.
57. Lapidus, L. J.; Steinbach, P. J.; Eaton, W. A.; Szabo, A.; Hofrichter, J. J. Phys. Chem. B 2002, 106, 11628.
58. Roder, H.; Shastry, M. R. Curr. Opin. Struct. Biol. 1999, 9, 620.
59. Bilsel, O.; Matthews, C. R. Curr. Opin. Struct. Biol. 2006, 16, 86.
60. Schwille, P. Cross-Correlation Analysis in FCS. In Fluorescence Correlation Spectroscopy; Elson, E. S., Rigler, R., Eds.; Springer-Verlag: Berlin, Germany, 2001.
61. Widengren, J.; Mets, Ü.; Rigler, R. J. Phys. Chem. 1995, 99, 13368.
62. Best, R.; Merchant, K.; Gopich, I. V.; Schuler, B.; Bax, A.; Eaton, W. A. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 18964.
63. Buscaglia, M.; Lapidus, L. J.; Eaton, W. A.; Hofrichter, J. Biophys. J. 2006, 91, 276.
64. Krieger, F.; Fierz, B.; Bieri, O.; Drewello, M.; Kiefhaber, T. J. Mol. Biol. 2003, 332, 265.
65. Fierz, B.; Kiefhaber, T. J. Am. Chem. Soc. 2007, 129, 672.
66. Deniz, A. A.; Laurence, T. A.; Beligere, G. S.; Dahan, M.; Martin, A. B.; Chemla, D. S.; Dawson, P. E.; Schultz, P. G.; Weiss, S. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 5179.
67. Kramers, H. A. Physica 1940, 7, 284.
68. Klimov, D. K.; Thirumalai, D. Phys. Rev. Lett. 1997, 79, 317.
69. Reference deleted in proof.
70. Jacob, M.; Holtermann, G.; Perl, D.; Reinstein, J.; Schindler, T.; Geeves, M. A.; Schmid, F. X. Biochemistry 1999, 38, 2882.
71. Magg, C.; Kubelka, J.; Holtermann, G.; Haas, E.; Schmid, F. X. J. Mol. Biol. 2006, 360, 1067.
72. Kuzmenkina, E. V.; Heyes, C. D.; Nienhaus, G. U. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 15471.
73. Sadqi, M.; Lapidus, L. J.; Munoz, V. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 12117.
74. Naganathan, A. N.; Doshi, U.; Munoz, V. J. Am. Chem. Soc. 2007, 129, 5673.
75. Friedman, B.; Oshaughnessy, B. Macromolecules 1993, 26, 4888.
76. Chan, H. S.; Dill, K. A. J. Chem. Phys. 1989, 90, 492.
77. Sheng, Y. J.; Hsu, P. H.; Chen, J. Z. Y.; Tsao, H. K. Macromolecules 2004, 37, 9257.
78. Zhou, H. X. Biochemistry 2004, 43, 2141.
79. Pastor, R. W.; Zwanzig, R.; Szabo, A. J. Chem Phys. 1996, 105, 3878.
80. Wang, Z. S.; Makarov, D. E. J. Chem Phys. 2002, 117, 4591.
81. Doucet, D.; Roitberg, A.; Hagen, S. J. Biophys. J. 2007, 92, 2281.
82. Lapidus, L. J.; Eaton, W. A.; Hofrichter, J. Phys. Rev. Lett. 2001, 8725, 8101.
83. Rhoades, E.; Gussakovsky. E.; Haran, G. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 3197.
84. Rhoades, E.; Cohen, M.; Schuler, B.; Haran, G. J. Am. Chem Soc. 2004, 126, 14686.
85. Li, G.; Levitus, M.; Bustamante, C.; Widom, J. Nat. Struct. Mol. Biol. 2005, 12, 46.
86. Torres, T.; Levitus, M. J. Phys. Chem B 2007, 111, 7392.