-
1
-
-
0343632363
-
Submillisecond kinetics of protein folding
-
Eaton, W. A., V. Munoz, P. A. Thompson, C. K. Chan, and J. Hofrichter. 1997. Submillisecond kinetics of protein folding. Curr. Opin. Struct. Biol. 7:10-14.
-
(1997)
Curr. Opin. Struct. Biol
, vol.7
, pp. 10-14
-
-
Eaton, W.A.1
Munoz, V.2
Thompson, P.A.3
Chan, C.K.4
Hofrichter, J.5
-
3
-
-
0033624685
-
Fast kinetics and mechanisms in protein folding
-
Eaton, W. A., V. Munoz, S. J. Hagen, G. S. Jas, L. J. Lapidus, E. R. Henry, and J. Hofrichter. 2000. Fast kinetics and mechanisms in protein folding. Annu. Rev. Biophys. Biomol. Struct. 29:327-359.
-
(2000)
Annu. Rev. Biophys. Biomol. Struct
, vol.29
, pp. 327-359
-
-
Eaton, W.A.1
Munoz, V.2
Hagen, S.J.3
Jas, G.S.4
Lapidus, L.J.5
Henry, E.R.6
Hofrichter, J.7
-
4
-
-
0037196288
-
A fluorescence-based method for direct measurement of submicrosecond intramolecular contact formation in biopolymers: An exploratory study with polypeptides
-
Hudgins, R. R., F. Huang, G. Gramlich, and W. M. Nau. 2002. A fluorescence-based method for direct measurement of submicrosecond intramolecular contact formation in biopolymers: an exploratory study with polypeptides. J. Am. Chem. Soc. 124:556-564.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 556-564
-
-
Hudgins, R.R.1
Huang, F.2
Gramlich, G.3
Nau, W.M.4
-
5
-
-
0033578370
-
The speed limit for protein folding measured by triplet-triplet energy transfer
-
Bieri, O., J. Wirz, B. Hellrung, M. Schutkowski, M. Drewello, and T. Kiefhaber. 1999. The speed limit for protein folding measured by triplet-triplet energy transfer. Proc. Natl. Acad. Sci. USA. 96:9597-9601.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9597-9601
-
-
Bieri, O.1
Wirz, J.2
Hellrung, B.3
Schutkowski, M.4
Drewello, M.5
Kiefhaber, T.6
-
6
-
-
0034691198
-
Measuring the rate of intramolecular contact formation in polypeptides
-
Lapidus, L. J., W. A. Eaton, and J. Hofrichter. 2000. Measuring the rate of intramolecular contact formation in polypeptides. Proc. Natl. Acad. Sci. USA. 97:7220-7225.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7220-7225
-
-
Lapidus, L.J.1
Eaton, W.A.2
Hofrichter, J.3
-
7
-
-
0029964867
-
Diffusion-limited contact formation in unfolded cytochrome c: Estimating the maximum rate of protein folding
-
Hagen, S. J., J. Hofrichter, A. Szabo, and W. A. Eaton. 1996. Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding. Proc. Natl. Acad. Sci. USA. 93:11615-11617.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 11615-11617
-
-
Hagen, S.J.1
Hofrichter, J.2
Szabo, A.3
Eaton, W.A.4
-
8
-
-
0027650292
-
Theory of intramolecular reactions in polymeric liquids
-
Friedman, B., and B. Oshaughnessy. 1993. Theory of intramolecular reactions in polymeric liquids. Macromolecules. 26:4888-4898.
-
(1993)
Macromolecules
, vol.26
, pp. 4888-4898
-
-
Friedman, B.1
Oshaughnessy, B.2
-
9
-
-
0028941444
-
Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin-inhibitor
-
Camacho, C. J., and D. Thirumalai. 1995. Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin-inhibitor. Proc. Natl. Acad. Sci. USA. 92:1277-1281.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 1277-1281
-
-
Camacho, C.J.1
Thirumalai, D.2
-
10
-
-
1442281485
-
Dynamics of chain closure: Approximate treatment of nonlocal interactions
-
Debnath, P., and B. J. Cherayil. 2004. Dynamics of chain closure: approximate treatment of nonlocal interactions. J. Chem. Phys. 120:2482-2489.
-
(2004)
J. Chem. Phys
, vol.120
, pp. 2482-2489
-
-
Debnath, P.1
Cherayil, B.J.2
-
11
-
-
36549094651
-
Intrachain loops in polymers: Effects of excluded volume
-
Chan, H. S., and K. A. Dill. 1989. Intrachain loops in polymers: effects of excluded volume. J. Chem. Phys. 90:492-509.
-
(1989)
J. Chem. Phys
, vol.90
, pp. 492-509
-
-
Chan, H.S.1
Dill, K.A.2
-
12
-
-
0001193711
-
The effects of internal constraints on the configurations of chain molecules
-
Chan, H. S., and K. A. Dill. 1990. The effects of internal constraints on the configurations of chain molecules. J. Chem. Phys. 92:3118-3135.
-
(1990)
J. Chem. Phys
, vol.92
, pp. 3118-3135
-
-
Chan, H.S.1
Dill, K.A.2
-
13
-
-
0842282001
-
First-passage time of cyclization dynamics of a wormlike polymer
-
Chen, J. Z. Y., H. K. Tsao, and Y. J. Sheng. 2004. First-passage time of cyclization dynamics of a wormlike polymer. Europhys. Lett. 65:407-413.
-
(2004)
Europhys. Lett
, vol.65
, pp. 407-413
-
-
Chen, J.Z.Y.1
Tsao, H.K.2
Sheng, Y.J.3
-
14
-
-
0037126769
-
Open-to-closed transition of a hard-sphere chain with attractive ends
-
Sheng, Y. J., J. Z. Y. Chen, and H. K. Tsao. 2002. Open-to-closed transition of a hard-sphere chain with attractive ends. Macromolecules. 35:9624-9627.
-
(2002)
Macromolecules
, vol.35
, pp. 9624-9627
-
-
Sheng, Y.J.1
Chen, J.Z.Y.2
Tsao, H.K.3
-
15
-
-
10044220912
-
Loop formation of a flexible polymer with two random reactive sites
-
Sheng, Y. J., P. H. Hsu, J. Z. Y. Chen, and H. K. Tsao. 2004. Loop formation of a flexible polymer with two random reactive sites. Macromolecules. 37:9257-9263.
-
(2004)
Macromolecules
, vol.37
, pp. 9257-9263
-
-
Sheng, Y.J.1
Hsu, P.H.2
Chen, J.Z.Y.3
Tsao, H.K.4
-
16
-
-
0037460277
-
Theory for the rate of contact formation in a polymer chain with local conformational transitions
-
Zhou, H. X. 2003. Theory for the rate of contact formation in a polymer chain with local conformational transitions. J. Chem. Phys. 118:2010-2015.
-
(2003)
J. Chem. Phys
, vol.118
, pp. 2010-2015
-
-
Zhou, H.X.1
-
17
-
-
1442300995
-
Polymer models of protein stability, folding, and interactions
-
Zhou, H. X. 2004. Polymer models of protein stability, folding, and interactions. Biochemistry. 43:2141-2154.
-
(2004)
Biochemistry
, vol.43
, pp. 2141-2154
-
-
Zhou, H.X.1
-
18
-
-
0030241614
-
Diffusion limited first contact of the ends of a polymer: Comparison of theory with simulation
-
Pastor, R. W., R. Zwanzig, and A. Szabo. 1996. Diffusion limited first contact of the ends of a polymer: comparison of theory with simulation. J. Chem. Phys. 105:3878-3882.
-
(1996)
J. Chem. Phys
, vol.105
, pp. 3878-3882
-
-
Pastor, R.W.1
Zwanzig, R.2
Szabo, A.3
-
19
-
-
0037471054
-
Cyclization of a polymer: First-passage problem for a non-Markovian process
-
Sokolov, I. M. 2003. Cyclization of a polymer: first-passage problem for a non-Markovian process. Phys. Rev. Lett. 90:080601.
-
(2003)
Phys. Rev. Lett
, vol.90
, pp. 080601
-
-
Sokolov, I.M.1
-
20
-
-
0036732274
-
Rate of intramolecular contact formation in peptides: The loop length dependence
-
Wang, Z. S., and D. E. Makarov. 2002. Rate of intramolecular contact formation in peptides: the loop length dependence. J. Chem. Phys. 117:4591-4593.
-
(2002)
J. Chem. Phys
, vol.117
, pp. 4591-4593
-
-
Wang, Z.S.1
Makarov, D.E.2
-
21
-
-
0343138110
-
The distribution function of internal distances of a single polymer chain with excluded volume in two and three dimensions: A Monte Carlo study
-
Wittkop, M., S. Kreitmeier, and D. Goritz. 1996. The distribution function of internal distances of a single polymer chain with excluded volume in two and three dimensions: a Monte Carlo study. J. Chem. Phys. 104:351-358.
-
(1996)
J. Chem. Phys
, vol.104
, pp. 351-358
-
-
Wittkop, M.1
Kreitmeier, S.2
Goritz, D.3
-
22
-
-
0037067120
-
Peptide loop-closure kinetics from microsecond molecular dynamics simulations in explicit solvent
-
Yeh, I. C., and G. Hummer. 2002. Peptide loop-closure kinetics from microsecond molecular dynamics simulations in explicit solvent. J. Am. Chem. Soc. 124:6563-6568.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 6563-6568
-
-
Yeh, I.C.1
Hummer, G.2
-
23
-
-
36749116443
-
1st passage time approach to diffusion controlled reactions
-
Szabo, A., K. Schulten, and Z. Schulten. 1980. 1st passage time approach to diffusion controlled reactions. J. Chem. Phys. 72:4350-4357.
-
(1980)
J. Chem. Phys
, vol.72
, pp. 4350-4357
-
-
Szabo, A.1
Schulten, K.2
Schulten, Z.3
-
24
-
-
0000232764
-
Distribution functions in the interior of polymer chains
-
Redner, S. 1980. Distribution functions in the interior of polymer chains. J. Phys. A. 13:3525-3541.
-
(1980)
J. Phys. A
, vol.13
, pp. 3525-3541
-
-
Redner, S.1
-
25
-
-
33646796290
-
Effects of denaturants on the dynamics of loop formation in polypeptides
-
Buscaglia, M., L. J. Lapidus, W. A. Eaton, and J. Hofrichter. 2006. Effects of denaturants on the dynamics of loop formation in polypeptides. Biophys. J. 91:276-288.
-
(2006)
Biophys. J
, vol.91
, pp. 276-288
-
-
Buscaglia, M.1
Lapidus, L.J.2
Eaton, W.A.3
Hofrichter, J.4
-
26
-
-
0018996351
-
Short-range correlation between elements of a long polymer in a good solvent
-
Descloizeaux, J. 1980. Short-range correlation between elements of a long polymer in a good solvent. J. Phys. (France). 41:223-238.
-
(1980)
J. Phys. (France)
, vol.41
, pp. 223-238
-
-
Descloizeaux, J.1
-
27
-
-
0026522733
-
DNA looping
-
Matthews, K. S. 1992. DNA looping. Microbiol. Rev. 56:123-136.
-
(1992)
Microbiol. Rev
, vol.56
, pp. 123-136
-
-
Matthews, K.S.1
-
28
-
-
0016502735
-
Distribution of end-to-end distances of oligopeptides in solution as estimated by energy-transfer
-
Haas, E., M. Wilchek, E. Katchalskikatzir, and I. Z. Steinberg. 1975. Distribution of end-to-end distances of oligopeptides in solution as estimated by energy-transfer. Proc. Natl. Acad. Sci. USA. 72:1807-1811.
-
(1975)
Proc. Natl. Acad. Sci. USA
, vol.72
, pp. 1807-1811
-
-
Haas, E.1
Wilchek, M.2
Katchalskikatzir, E.3
Steinberg, I.Z.4
-
29
-
-
0000469816
-
Evaluation of distribution of distances between energy donors and acceptors by fluorescence decay
-
Grinvald, A., E. Haas, and I. Z. Steinberg. 1972. Evaluation of distribution of distances between energy donors and acceptors by fluorescence decay. Proc. Natl. Acad. Sci. USA. 69:2273-2277.
-
(1972)
Proc. Natl. Acad. Sci. USA
, vol.69
, pp. 2273-2277
-
-
Grinvald, A.1
Haas, E.2
Steinberg, I.Z.3
-
30
-
-
0017875133
-
Brownian-motion of ends of oligopeptide chains in solution as estimated by energy-transfer between chain ends
-
Haas, E., E. Katchalskikatzir, and I. Z. Steinberg. 1978. Brownian-motion of ends of oligopeptide chains in solution as estimated by energy-transfer between chain ends. Biopolymers. 17:11-31.
-
(1978)
Biopolymers
, vol.17
, pp. 11-31
-
-
Haas, E.1
Katchalskikatzir, E.2
Steinberg, I.Z.3
-
31
-
-
0043237588
-
Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding
-
Krieger, F., B. Fierz, O. Bieri, M. Drewello, and T. Kiefhaber. 2003. Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding. J. Mol. Biol. 332:265-274.
-
(2003)
J. Mol. Biol
, vol.332
, pp. 265-274
-
-
Krieger, F.1
Fierz, B.2
Bieri, O.3
Drewello, M.4
Kiefhaber, T.5
-
32
-
-
28444453293
-
Tertiary contact formation of a-synuclein probed by electron transfer
-
Lee, J. C., H. B. Gray, and J. R. Winkler. 2005. Tertiary contact formation of a-synuclein probed by electron transfer. J. Am. Chem. Soc. 127:16388-16389.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 16388-16389
-
-
Lee, J.C.1
Gray, H.B.2
Winkler, J.R.3
-
33
-
-
0037038514
-
Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: Testing a 1-dimensional diffusion model for peptide dynamics
-
Lapidus, L. J., P. J. Steinbach, W. A. Eaton, A. Szabo, and J. Hofrichter. 2002. Effects of chain stiffness on the dynamics of loop formation in polypeptides. Appendix: Testing a 1-dimensional diffusion model for peptide dynamics. J. Phys. Chem. B. 106:11628-11640.
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 11628-11640
-
-
Lapidus, L.J.1
Steinbach, P.J.2
Eaton, W.A.3
Szabo, A.4
Hofrichter, J.5
-
34
-
-
0033536469
-
An exceedingly long-lived fluorescent state as a distinct structural and dynamic probe for supramolecular association: An exploratory study of host-guest complexation by cyclodextrins
-
Nau, W. M., and X. Y. Zhang. 1999. An exceedingly long-lived fluorescent state as a distinct structural and dynamic probe for supramolecular association: an exploratory study of host-guest complexation by cyclodextrins. J. Am. Chem. Soc. 121:8022-8032.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 8022-8032
-
-
Nau, W.M.1
Zhang, X.Y.2
-
35
-
-
0035793222
-
Rate of intrachain contact formation in an unfolded protein: Temperature and denaturant effects
-
Hagen, S. J., C. W. Carswell, and E. M. Sjolander. 2001. Rate of intrachain contact formation in an unfolded protein: temperature and denaturant effects. J. Mol. Biol. 305:1161-1171.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 1161-1171
-
-
Hagen, S.J.1
Carswell, C.W.2
Sjolander, E.M.3
-
36
-
-
0037617492
-
Measurement of submicrosecond intramolecular contact formation in peptides at the single-molecule level
-
Neuweiler, H., A. Schulz, M. Bohmer, J. Enderlein, and M. Sauer. 2003. Measurement of submicrosecond intramolecular contact formation in peptides at the single-molecule level. J. Am. Chem. Soc. 125:5324-5330.
-
(2003)
J. Am. Chem. Soc
, vol.125
, pp. 5324-5330
-
-
Neuweiler, H.1
Schulz, A.2
Bohmer, M.3
Enderlein, J.4
Sauer, M.5
-
37
-
-
34547925924
-
Kinetics of interior loop formation in semiflexible chains
-
Hyeon, C., and D. Thirumalai. 2006. Kinetics of interior loop formation in semiflexible chains. J. Chem. Phys. 124:104905.
-
(2006)
J. Chem. Phys
, vol.124
, pp. 104905
-
-
Hyeon, C.1
Thirumalai, D.2
-
38
-
-
24144469761
-
Diffusional limits to the speed of protein folding: Fact or friction?
-
Hagen, S. J., L. L. Qiu, and S. A. Pabit. 2005. Diffusional limits to the speed of protein folding: fact or friction? J. Phys. Condens. Matter. 17:S1503-S1514.
-
(2005)
J. Phys. Condens. Matter
, vol.17
-
-
Hagen, S.J.1
Qiu, L.L.2
Pabit, S.A.3
-
39
-
-
0037326644
-
Non-Gaussian dynamics from a simulation of a short peptide: Loop closure rates and effective diffusion coefficients
-
Portman, J. J. 2003. Non-Gaussian dynamics from a simulation of a short peptide: loop closure rates and effective diffusion coefficients. J. Chem. Phys. 118:2381-2391.
-
(2003)
J. Chem. Phys
, vol.118
, pp. 2381-2391
-
-
Portman, J.J.1
-
40
-
-
33645504437
-
Diffusion-controlled intrachain reactions of polymers. 2. Results for a pair of terminal reactive groups
-
Wilemski, G., and M. Fixman. 1974. Diffusion-controlled intrachain reactions of polymers. 2. Results for a pair of terminal reactive groups. J. Chem. Phys. 60:878-890.
-
(1974)
J. Chem. Phys
, vol.60
, pp. 878-890
-
-
Wilemski, G.1
Fixman, M.2
-
42
-
-
0032516205
-
The molecular elasticity of the extracellular matrix protein tenascin
-
Oberhauser, A. F., P. E. Marszalek, H. P. Erickson, and J. M. Fernandez. 1998. The molecular elasticity of the extracellular matrix protein tenascin. Nature. 393:181-185.
-
(1998)
Nature
, vol.393
, pp. 181-185
-
-
Oberhauser, A.F.1
Marszalek, P.E.2
Erickson, H.P.3
Fernandez, J.M.4
-
43
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
Rief, M., M. Gautel, F. Oesterhelt, J. M. Fernandez, and H. E. Gaub. 1997. Reversible unfolding of individual titin immunoglobulin domains by AFM. Science. 276:1109-1112.
-
(1997)
Science
, vol.276
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Oesterhelt, F.3
Fernandez, J.M.4
Gaub, H.E.5
-
44
-
-
0027131947
-
Fast events in protein-folding initiated by nanosecond laser photolysis
-
Jones, C. M., E. R. Henry, Y. Hu, C. K. Chan, S. D. Luck, A. Bhuyan, H. Roder, J. Hofrichter, and W. A. Eaton. 1993. Fast events in protein-folding initiated by nanosecond laser photolysis. Proc. Natl. Acad. Sci. USA. 90:11860-11864.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 11860-11864
-
-
Jones, C.M.1
Henry, E.R.2
Hu, Y.3
Chan, C.K.4
Luck, S.D.5
Bhuyan, A.6
Roder, H.7
Hofrichter, J.8
Eaton, W.A.9
-
45
-
-
0001341140
-
Internal viscosity of polymers and the role of solvent resistance
-
Manke, C. W., and M. C. Williams. 1985. Internal viscosity of polymers and the role of solvent resistance. Macromolecules. 18:2045-2051.
-
(1985)
Macromolecules
, vol.18
, pp. 2045-2051
-
-
Manke, C.W.1
Williams, M.C.2
|