-
1
-
-
0020024242
-
Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding
-
Kim, P.S. & Baldwin, R.L. Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding. Annu. Rev. Biochem. 51, 459-489 (1982).
-
(1982)
Annu. Rev. Biochem.
, vol.51
, pp. 459-489
-
-
Kim, P.S.1
Baldwin, R.L.2
-
2
-
-
0025345415
-
Intermediates in the folding reactions of small proteins
-
Kim, P.S. & Baldwin, R.L. Intermediates in the folding reactions of small proteins, Annu. Rev. Biochem. 59, 631-660 (1990).
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 631-660
-
-
Kim, P.S.1
Baldwin, R.L.2
-
3
-
-
0023506457
-
Folding and association of proteins
-
Jaenicke, R. Folding and association of proteins. Prog. Biophys. molec. Biol. 49, 117-237 (1987).
-
(1987)
Prog. Biophys. Molec. Biol.
, vol.49
, pp. 117-237
-
-
Jaenicke, R.1
-
4
-
-
0024417964
-
The molten globule as a clue for understanding the folding and cooperativity of globular-protein structure
-
Kuwajima, K. The molten globule as a clue for understanding the folding and cooperativity of globular-protein structure. Proteins Struct. Funct. Genet. 6, 87-103 (1989).
-
(1989)
Proteins Struct. Funct. Genet.
, vol.6
, pp. 87-103
-
-
Kuwajima, K.1
-
5
-
-
0027313673
-
Pathways of Protein Folding
-
Matthews, C.R. Pathways of Protein Folding. Annu. Rev. Biochem. 62, 653-683 (1993).
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 653-683
-
-
Matthews, C.R.1
-
6
-
-
0028402689
-
The barriers in protein folding
-
Sosnick, T.R., Mayne, L., Hiller, R. & Englander, S.W. The barriers in protein folding. Nature Struct. Biol. 1, 149-156 (1994).
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 149-156
-
-
Sosnick, T.R.1
Mayne, L.2
Hiller, R.3
Englander, S.W.4
-
7
-
-
0029025915
-
Kinetic traps in lysozyme folding
-
Kiefhaber, T. Kinetic traps in lysozyme folding. Proc. Natl. Acad. Sci. USA 92, 9029-9033 (1995).
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 9029-9033
-
-
Kiefhaber, T.1
-
8
-
-
0029249945
-
The nature of protein folding pathways: The classical versus the new view
-
Baldwin, R.L. The nature of protein folding pathways: The classical versus the new view. J. Biomolec. NMR 5, 103-109 (1995).
-
(1995)
J. Biomolec. NMR
, vol.5
, pp. 103-109
-
-
Baldwin, R.L.1
-
9
-
-
0030347877
-
On-pathway versus off-pathway folding intermediates
-
Baldwin, R.L. On-pathway versus off-pathway folding intermediates. Folding & Design 1, R1-R8 (1996).
-
(1996)
Folding & Design
, vol.1
-
-
Baldwin, R.L.1
-
10
-
-
0029904097
-
Role of non-native aromatic and hydrophobic interactions in the folding of hen egg white lysozyme
-
Rothwarf, D.M. & Scheraga, H.A. Role of non-native aromatic and hydrophobic interactions in the folding of hen egg white lysozyme. Biochemistry 35, 13797-13807 (1996).
-
(1996)
Biochemistry
, vol.35
, pp. 13797-13807
-
-
Rothwarf, D.M.1
Scheraga, H.A.2
-
11
-
-
0015918856
-
Kinetics of unfolding and refolding of proteins. I. Mathematical analysis
-
Ikai, A. & Tanford, C. Kinetics of unfolding and refolding of proteins. I. Mathematical analysis. J. Mol. Biol. 73, 145-163 (1973).
-
(1973)
J. Mol. Biol.
, vol.73
, pp. 145-163
-
-
Ikai, A.1
Tanford, C.2
-
12
-
-
0015918913
-
Kinetics of unfolding and refolding of proteins. II. Results for cytochrome c
-
Ikai, A., Fish, W.W. & Tanford, C. Kinetics of unfolding and refolding of proteins. II. Results for cytochrome c. J. Mol. Biol. 73, 165-184 (1973).
-
(1973)
J. Mol. Biol.
, vol.73
, pp. 165-184
-
-
Ikai, A.1
Fish, W.W.2
Tanford, C.3
-
13
-
-
0026345750
-
Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition
-
Jackson, S.E. & Fersht, A.R. Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition. Biochemistry 30, 10428-10435 (1991).
-
(1991)
Biochemistry
, vol.30
, pp. 10428-10435
-
-
Jackson, S.E.1
Fersht, A.R.2
-
14
-
-
0027382315
-
Structure of the hydrophobic core in the transition state for folding of chymotrypsin inhibitor 2: A critical test of the protein engineering method of analysis
-
Jackson, S.E., elMasry, N. & Fersht, A.R. Structure of the hydrophobic core in the transition state for folding of chymotrypsin inhibitor 2: a critical test of the protein engineering method of analysis. Biochemistry 32, 11270-1278 (1993).
-
(1993)
Biochemistry
, vol.32
, pp. 11270-11278
-
-
Jackson, S.E.1
Elmasry, N.2
Fersht, A.R.3
-
15
-
-
0029049321
-
Extremely rapid folding in the absence of intermediates: The cold-shock protein from Bacillus subtilis
-
Schindler, T., Herrler, M., Marahiel, M.A. & Schmid, F.X. Extremely rapid folding in the absence of intermediates: the cold-shock protein from Bacillus subtilis. Nature Struct. Biol. 2, 663-673 (1995).
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 663-673
-
-
Schindler, T.1
Herrler, M.2
Marahiel, M.A.3
Schmid, F.X.4
-
16
-
-
0030450051
-
Thermodynamic properties of an extremely rapid protein folding reaction
-
Schindler, T. & Schmid, F.X. Thermodynamic properties of an extremely rapid protein folding reaction. Biochemistry 35, 16833-16842 (1996).
-
(1996)
Biochemistry
, vol.35
, pp. 16833-16842
-
-
Schindler, T.1
Schmid, F.X.2
-
17
-
-
0029151158
-
Submillisecond folding of monomeric lambda represser
-
Huang, G.S. & Oas, T.G, Submillisecond folding of monomeric lambda represser. Proc. Nalt. Acad. Sci. USA 92, 6878-6882 (1995).
-
(1995)
Proc. Nalt. Acad. Sci. USA
, vol.92
, pp. 6878-6882
-
-
Huang, G.S.1
Oas, T.G.2
-
18
-
-
0030601788
-
Microsecond protein folding through a compact transition state
-
Burton, R.E., Huang, G.S., Daugherty, M.A., Fullbright, P.W. & Oas, T.G. Microsecond protein folding through a compact transition state. J. Mol. Biol. 263, 311-322 (1996).
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 311-322
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Fullbright, P.W.4
Oas, T.G.5
-
19
-
-
0029003514
-
Folding of a four-helix bundle: Studies of acyl-coenzyme A binding protein
-
Kragelund, B.B., Robinson, C.V., Knudsen, J., Dobson, C.M. & Poulsen, F.M. Folding of a four-helix bundle: Studies of acyl-coenzyme A binding protein. Biochemistry 34, 7217-7224 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 7217-7224
-
-
Kragelund, B.B.1
Robinson, C.V.2
Knudsen, J.3
Dobson, C.M.4
Poulsen, F.M.5
-
20
-
-
0029965111
-
Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family
-
Kragelund, B.B. et al. Fast and one-step folding of closely and distantly related homologous proteins of a four-helix bundle family. J. Mol. Biol. 256, 187-200 (1996).
-
(1996)
J. Mol. Biol.
, vol.256
, pp. 187-200
-
-
Kragelund, B.B.1
-
21
-
-
0028331876
-
Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition
-
Viguera, A.R., Martinez, J.C., Filimonov, V.V., Mateo, P.L. & Serrano, L. Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition. Biochemistry 32, 2142-2150 (1994).
-
(1994)
Biochemistry
, vol.32
, pp. 2142-2150
-
-
Viguera, A.R.1
Martinez, J.C.2
Filimonov, V.V.3
Mateo, P.L.4
Serrano, L.5
-
22
-
-
0028788480
-
Evidence for a two-state transition in the folding process of the activation domain of human procarboxypeptidase A2
-
Villegas, V. et al. Evidence for a two-state transition in the folding process of the activation domain of human procarboxypeptidase A2. Biochemistry 34, 15105-15110 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 15105-15110
-
-
Villegas, V.1
-
23
-
-
0030755502
-
Absence of a stable intermediate on the folding pathway of protein A
-
Bai, Y.W., Karim, A., Dyson, H.J. & Wright, P.E. Absence of a stable intermediate on the folding pathway of protein A. Prot. Sci. 6, 1449-1457 (1997).
-
(1997)
Prot. Sci.
, vol.6
, pp. 1449-1457
-
-
Bai, Y.W.1
Karim, A.2
Dyson, H.J.3
Wright, P.E.4
-
24
-
-
0023186464
-
Induction of proteins in response to low temperature in Escherichia coli
-
Jones, P.G., van Bogelen, R.A. & Neidhardt, F.C. Induction of proteins in response to low temperature in Escherichia coli. J. Bacteriol. 169, 2092-2095 (1987).
-
(1987)
J. Bacteriol.
, vol.169
, pp. 2092-2095
-
-
Jones, P.G.1
Van Bogelen, R.A.2
Neidhardt, F.C.3
-
25
-
-
0026648953
-
Characterization of cspB, a Bacillus subtilis inducible cold shock gene affecting cell viability at low temperature
-
Willimsky, G., Bang, H., Fischer, G. & Marahiel, M.A. Characterization of cspB, a Bacillus subtilis inducible cold shock gene affecting cell viability at low temperature. J. Bacteriol. 174, 6326-6335 (1992).
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6326-6335
-
-
Willimsky, G.1
Bang, H.2
Fischer, G.3
Marahiel, M.A.4
-
26
-
-
0027296211
-
Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein
-
Schindelin, H., Marahiel, M.A. & Heinemann, U. Universal nucleic acid-binding domain revealed by crystal structure of the B. subtilis major cold-shock protein. Nature 364, 164-168 (1993).
-
(1993)
Nature
, vol.364
, pp. 164-168
-
-
Schindelin, H.1
Marahiel, M.A.2
Heinemann, U.3
-
27
-
-
0027248819
-
Structure in solution of the major cold-shock protein from Bacillus subtilis
-
Schnuchel, A. et al. Structure in solution of the major cold-shock protein from Bacillus subtilis. Nature 364, 169-171 (1993).
-
(1993)
Nature
, vol.364
, pp. 169-171
-
-
Schnuchel, A.1
-
28
-
-
0015918873
-
Kinetics of unfolding and refolding of proteins. III. Results for lysozyme
-
Tanford, C., Aune, K.C. & Ikai, A. Kinetics of unfolding and refolding of proteins. III. Results for lysozyme. J. Mol. Biol.73, 185-197 (1973).
-
(1973)
J. Mol. Biol.
, vol.73
, pp. 185-197
-
-
Tanford, C.1
Aune, K.C.2
Ikai, A.3
-
29
-
-
0025698613
-
Transient folding intermediates characterized by protein engineering
-
Matouschek, A., Kellis, J.T., Serrano, L., Bycroft, M. & Fersht, A.R. Transient folding intermediates characterized by protein engineering. Nature 346, 440-445 (1990).
-
(1990)
Nature
, vol.346
, pp. 440-445
-
-
Matouschek, A.1
Kellis, J.T.2
Serrano, L.3
Bycroft, M.4
Fersht, A.R.5
-
30
-
-
0027163998
-
Protein Folding and Stability - The Pathway of Folding of Barnase
-
Fersht, A.R. Protein Folding and Stability - The Pathway of Folding of Barnase. FEBS Lett. 325, 5-16 (1993).
-
(1993)
FEBS Lett
, vol.325
, pp. 5-16
-
-
Fersht, A.R.1
-
31
-
-
0027305989
-
Folding and Stability of a Tryptophan-Containing Mutant of Ubiquitin
-
Khorasanizadeh, S., Peters, I.D., Butt T.R. & Roder, H. Folding and Stability of a Tryptophan-Containing Mutant of Ubiquitin. Biochemistry 32, 7054-7063 (1993).
-
(1993)
Biochemistry
, vol.32
, pp. 7054-7063
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Butt, T.R.3
Roder, H.4
-
32
-
-
0030057477
-
Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues
-
Khorasanizadeh, S., Peters, I.D. & Roder, H. Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues. Nature Struct. Biol. 3, 193-205 (1996).
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 193-205
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Roder, H.3
-
33
-
-
0031055942
-
Kinetic role of early intermediates in protein folding
-
Roder, H. & Colon, W. Kinetic role of early intermediates in protein folding. Curr. Opin. Struct. Biol. 7, 15-28 (1997).
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 15-28
-
-
Roder, H.1
Colon, W.2
-
34
-
-
0030796986
-
Three-state model for lysozyme folding: Triangular folding mechanism with an energetically trapped intermediate
-
Wildegger, G. & Kiefhaber, T. Three-state model for lysozyme folding: Triangular folding mechanism with an energetically trapped intermediate. J. Mol. Biol. 270, 294-304 (1997).
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 294-304
-
-
Wildegger, G.1
Kiefhaber, T.2
-
36
-
-
0022522022
-
Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 °C
-
Huber, R. et al. Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90 °C. Arch. Microbiol. 144, 324-333 (1986).
-
(1986)
Arch. Microbiol.
, vol.144
, pp. 324-333
-
-
Huber, R.1
-
37
-
-
0028963362
-
Toward an outline of the topography of a realistic protein- Folding funnel
-
Qnuchic, J.N., Wolynes, P.G., Luthey-Schulten, Z. & Socci, N.D. Toward an outline of the topography of a realistic protein- folding funnel. Proc. Natl. Acad. Sci. USA 92, 3626-3630 (1995).
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3626-3630
-
-
Qnuchic, J.N.1
Wolynes, P.G.2
Luthey-Schulten, Z.3
Socci, N.D.4
-
38
-
-
0030322669
-
Protein folding funnels: The nature of the transition state ensemble
-
Onuchic, J.N., Socci, N.D., Luthey-Schulten, Z. & Wolynes, P.G. Protein folding funnels: The nature of the transition state ensemble. Folding & Design 1, 441-450 (1996).
-
(1996)
Folding & Design
, vol.1
, pp. 441-450
-
-
Onuchic, J.N.1
Socci, N.D.2
Luthey-Schulten, Z.3
Wolynes, P.G.4
-
39
-
-
0038933138
-
Folding of the disulfide-bonded beta-sheet protein tendamistat; Rapid two-state folding without hydrophobic collapse
-
Scho&nbrunner, N., Koller, K.P. & Kiefhaber, T. Folding of the disulfide-bonded beta-sheet protein tendamistat; Rapid two-state folding without hydrophobic collapse J. Mol. Biol. 268, 526-538 (1997).
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 526-538
-
-
Schonbrunner, N.1
Koller, K.P.2
Kiefhaber, T.3
-
40
-
-
0031574916
-
Non-native local interactions in protein folding and stability: Introducing a helical tendency in the all-beta sheet alpha-spectrin SH3 domain
-
Prieto, J., Wilmanns, M., Jiménez, M.A., Rico, M. & Serrano, L Non-native local interactions in protein folding and stability: introducing a helical tendency in the all-beta sheet alpha-spectrin SH3 domain. J. Mol. Biol. 268, 760-778 (1997).
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 760-778
-
-
Prieto, J.1
Wilmanns, M.2
Jiménez, M.A.3
Rico, M.4
Serrano, L.5
-
41
-
-
0029760326
-
Different folding transition states may result in the same native structure
-
Viguera, A.R., Serrano, L. & Wilmanns, M. Different folding transition states may result in the same native structure. Nature Struct. Biol. 3, 874-880 (1996).
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 874-880
-
-
Viguera, A.R.1
Serrano, L.2
Wilmanns, M.3
-
42
-
-
0028882589
-
P22 arc represser: Transition state properties inferred from mutational effects on the rates of protein unfolding and refolding
-
Milla, M.E., Brown, B.M., Waldburgen, C.D. & Sauer, R.T. P22 arc represser: Transition state properties inferred from mutational effects on the rates of protein unfolding and refolding. Biochemistry 34, 13914-13919 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 13914-13919
-
-
Milla, M.E.1
Brown, B.M.2
Waldburgen, C.D.3
Sauer, R.T.4
-
43
-
-
0028892177
-
Movement of the position of the transition state in protein folding
-
Matouschek, A., Otzen, D.E., Itzhaki, L.S., Jackson, S.E, & Fersht, A.R. Movement of the position of the transition state in protein folding. Biochemistry 34, 13656-13662 (1995).
-
(1995)
Biochemistry
, vol.34
, pp. 13656-13662
-
-
Matouschek, A.1
Otzen, D.E.2
Itzhaki, L.S.3
Jackson, S.E.4
Fersht, A.R.5
-
44
-
-
0031005061
-
The energy landscape of a fast-folding protein mapped by Ala-Gly Substitutions
-
Burton, R.E., Huang, G.S., Daugherty, M.A., Calderone, T.L. & Oas, T.G. The energy landscape of a fast-folding protein mapped by Ala-Gly Substitutions. Nature Struct. Biol. 4, 305-310 (1997).
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 305-310
-
-
Burton, R.E.1
Huang, G.S.2
Daugherty, M.A.3
Calderone, T.L.4
Oas, T.G.5
-
45
-
-
0031837168
-
Protein folding: Matching 'theory' and experiment
-
in the press
-
Laurents, D.V. & Baldwin, R.L. Protein folding: matching 'theory' and experiment. Biophys. J. in the press (1998).
-
(1998)
Biophys. J.
-
-
Laurents, D.V.1
Baldwin, R.L.2
-
46
-
-
0030334626
-
Universality and diversity of the protein folding scenarios: A comprehensive analysis with the aid of a lattice model
-
Mirny, L.A., Abkevich, V. & Shakhnovich, E.I. Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model. Folding & Design 1, 103-116 (1996).
-
(1996)
Folding & Design
, vol.1
, pp. 103-116
-
-
Mirny, L.A.1
Abkevich, V.2
Shakhnovich, E.I.3
-
47
-
-
0028174310
-
How does a protein fold?
-
Sali, A., Shakhnovich, E. & Karplus, M. How does a protein fold? Nature 369, 248-251 (1994).
-
(1994)
Nature
, vol.369
, pp. 248-251
-
-
Sali, A.1
Shakhnovich, E.2
Karplus, M.3
-
48
-
-
0029670994
-
Conserved residues and the mechanism of protein folding
-
Shakhnovich, E., Abkevich, V. & Ptitsyn, O. Conserved residues and the mechanism of protein folding. Nature 379, 96-98 (1996).
-
(1996)
Nature
, vol.379
, pp. 96-98
-
-
Shakhnovich, E.1
Abkevich, V.2
Ptitsyn, O.3
-
49
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace, C.N. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Meth. Enz. 131, 266-280 (1986).
-
(1986)
Meth. Enz.
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
50
-
-
0026642589
-
Overproduction, crystallization, and preliminary X-ray diffraction studies of the major cold shock protein from Bacillus subtilis, CspB
-
Schindelin, H., Herrler, M., Willimsky, G., Marahiel, M.A. & Heinemann, U. Overproduction, crystallization, and preliminary X-ray diffraction studies of the major cold shock protein from Bacillus subtilis, CspB, Proteins Struct. Funct. Genet 14, 120-124 (1992).
-
(1992)
Proteins Struct. Funct. Genet
, vol.14
, pp. 120-124
-
-
Schindelin, H.1
Herrler, M.2
Willimsky, G.3
Marahiel, M.A.4
Heinemann, U.5
-
51
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gill, S.C. & von Hippel, P.H. Calculation of protein extinction coefficients from amino acid sequence data. Anal. Biochem. 182, 319-326 (1989).
-
(1989)
Anal. Biochem.
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
Von Hippel, P.H.2
-
52
-
-
0028871804
-
How to measure and predict the molar absorption coefficient of a protein
-
Pace, CM., Vajdos, F., Fee, L., Grimsley, G. & Gray, T. How to measure and predict the molar absorption coefficient of a protein. Prot. Sci. 4, 2411-2423 (1995).
-
(1995)
Prot. Sci.
, vol.4
, pp. 2411-2423
-
-
Pace, C.M.1
Vajdos, F.2
Fee, L.3
Grimsley, G.4
Gray, T.5
-
53
-
-
0023697408
-
Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl αchymotrypsin using different denaturants
-
Santoro, M.M. & Bolen, D.W. Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl αchymotrypsin using different denaturants. Biochemistry 27, 8063-8068 (1988).
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
-
54
-
-
0017845014
-
Test reaction for a stopped-flow apparatus
-
Tonomura, B., Nakatani, H., Ohnishi, M., Yamaguchi-lto, J. & Hiromi, K. Test reaction for a stopped-flow apparatus. Anal. Biochem. 84, 370-383 (1978).
-
(1978)
Anal. Biochem.
, vol.84
, pp. 370-383
-
-
Tonomura, B.1
Nakatani, H.2
Ohnishi, M.3
Yamaguchi-lto, J.4
Hiromi, K.5
-
55
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, PJ. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr. 24, 946-950 (1991).
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
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