-
1
-
-
0344613211
-
Ribosomal ITS sequences and plant phylogenetic inference
-
Álvarez I., and Wendel J.F. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29 (2003) 417-434
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 417-434
-
-
Álvarez, I.1
Wendel, J.F.2
-
2
-
-
0036694538
-
Evolutionary dynamics of mitochondrial plasmids in natural populations of Silene vulgaris
-
Andersson-Ceplitis H. Evolutionary dynamics of mitochondrial plasmids in natural populations of Silene vulgaris. Evolution 56 (2002) 1592-1598
-
(2002)
Evolution
, vol.56
, pp. 1592-1598
-
-
Andersson-Ceplitis, H.1
-
3
-
-
0038714278
-
Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans
-
Archibald J.M., Rogers M.B., Toop M., Ishida K., and Keeling P.J. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. Proc. Natl. Acad. Sci. USA 100 (2003) 7678-7683
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7678-7683
-
-
Archibald, J.M.1
Rogers, M.B.2
Toop, M.3
Ishida, K.4
Keeling, P.J.5
-
4
-
-
14244253383
-
Phylogenetic relationships within Zaluzianskya (Scrophulariaceae s.s., tribe Manuleeae): classification based on DNA sequences from multiple genomes and implications for character evolution and biogeography
-
Archibald J.K., Mort M.E., and Wolfe A.D. Phylogenetic relationships within Zaluzianskya (Scrophulariaceae s.s., tribe Manuleeae): classification based on DNA sequences from multiple genomes and implications for character evolution and biogeography. Syst. Bot. 30 (2005) 196-215
-
(2005)
Syst. Bot.
, vol.30
, pp. 196-215
-
-
Archibald, J.K.1
Mort, M.E.2
Wolfe, A.D.3
-
5
-
-
3142719794
-
Circular chloroplast chromosomes: the grand illusion
-
Bendich A.J. Circular chloroplast chromosomes: the grand illusion. Plant Cell 16 (2004) 1661-1666
-
(2004)
Plant Cell
, vol.16
, pp. 1661-1666
-
-
Bendich, A.J.1
-
6
-
-
20444491634
-
A review of long-branch attraction
-
Bergsten J. A review of long-branch attraction. Cladistics 21 (2005) 163-193
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
Bergsten, J.1
-
7
-
-
44949167029
-
-
Boissier, E., 1888. Flora Orientalis.
-
Boissier, E., 1888. Flora Orientalis.
-
-
-
-
8
-
-
0036036258
-
Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels
-
Bremer B., Bremer K., Heidari N., Erixon P., Olmstead R.G., Anderberg A.A., Källersjö M., and Barkhordarian E. Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels. Mol. Phylogenet. Evol. 24 (2002) 274-301
-
(2002)
Mol. Phylogenet. Evol.
, vol.24
, pp. 274-301
-
-
Bremer, B.1
Bremer, K.2
Heidari, N.3
Erixon, P.4
Olmstead, R.G.5
Anderberg, A.A.6
Källersjö, M.7
Barkhordarian, E.8
-
9
-
-
1542347067
-
Neighbor-Net: an agglomerative method for the construction of phylogenetic networks
-
Bryant D., and Moulton V. Neighbor-Net: an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 21 (2004) 255-265
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 255-265
-
-
Bryant, D.1
Moulton, V.2
-
10
-
-
3042674097
-
Molecular systematics of the eastern North American Silene: evidence from nuclear ITS and chloroplast trnL intron sequences
-
Burleigh J.G., and Holtsford T.P. Molecular systematics of the eastern North American Silene: evidence from nuclear ITS and chloroplast trnL intron sequences. Rhodora 105 (2003) 76-90
-
(2003)
Rhodora
, vol.105
, pp. 76-90
-
-
Burleigh, J.G.1
Holtsford, T.P.2
-
11
-
-
0005308478
-
The phytogeographical position of rodhos
-
Carlström A. The phytogeographical position of rodhos. Proc. R. Soc. Edinburgh B 89 (1986) 79-88
-
(1986)
Proc. R. Soc. Edinburgh B
, vol.89
, pp. 79-88
-
-
Carlström, A.1
-
12
-
-
0000031660
-
Phylogenetics of seed plants-an analysis of nucleotide-sequences from the plastid gene rbcL
-
Chase M.W., Soltis D.E., Olmstead R.G., Morgan D., Les D.H., Mishler B.D., Duvall M.R., Price R.A., Hills H.G., Qiu Y.L., Kron K.A., Rettig J.H., Conti E., Palmer J.D., Manhart J.R., Sytsma K.J., Michaels H.J., Kress W.J., Karol K.G., Clark W.D., Hedren M., Gaut B.S., Jansen R.K., Kim K.J., Wimpee C.F., Smith J.F., Furnier G.R., Strauss S.H., Xiang Q.Y., Plunkett G.M., Soltis P.S., Swensen S.M., Williams S.E., Gadek P.A., Quinn C.J., Eguiarte L.E., Golenberg E., Learn G.H., Graham S.W., Barrett S.C.H., Dayanandan S., and Albert V.A. Phylogenetics of seed plants-an analysis of nucleotide-sequences from the plastid gene rbcL. Ann. MO Bot. Gard. 80 (1993) 528-580
-
(1993)
Ann. MO Bot. Gard.
, vol.80
, pp. 528-580
-
-
Chase, M.W.1
Soltis, D.E.2
Olmstead, R.G.3
Morgan, D.4
Les, D.H.5
Mishler, B.D.6
Duvall, M.R.7
Price, R.A.8
Hills, H.G.9
Qiu, Y.L.10
Kron, K.A.11
Rettig, J.H.12
Conti, E.13
Palmer, J.D.14
Manhart, J.R.15
Sytsma, K.J.16
Michaels, H.J.17
Kress, W.J.18
Karol, K.G.19
Clark, W.D.20
Hedren, M.21
Gaut, B.S.22
Jansen, R.K.23
Kim, K.J.24
Wimpee, C.F.25
Smith, J.F.26
Furnier, G.R.27
Strauss, S.H.28
Xiang, Q.Y.29
Plunkett, G.M.30
Soltis, P.S.31
Swensen, S.M.32
Williams, S.E.33
Gadek, P.A.34
Quinn, C.J.35
Eguiarte, L.E.36
Golenberg, E.37
Learn, G.H.38
Graham, S.W.39
Barrett, S.C.H.40
Dayanandan, S.41
Albert, V.A.42
more..
-
13
-
-
44949236506
-
-
Chowdhuri, P.K., 1957. Studies in the genus Silene. Notes from the Royal Botanic Garden Edinburgh, vol. 22, pp. 221-278.
-
Chowdhuri, P.K., 1957. Studies in the genus Silene. Notes from the Royal Botanic Garden Edinburgh, vol. 22, pp. 221-278.
-
-
-
-
14
-
-
44949158246
-
-
Davis P.H. (Ed), Flora of Turkey 2, Edinburgh
-
Coode M.J., and Cullen J. In: Davis P.H. (Ed). Silene L. (1967), Flora of Turkey 2, Edinburgh
-
(1967)
Silene L.
-
-
Coode, M.J.1
Cullen, J.2
-
15
-
-
0029750274
-
Evolution of reproductive systems in the genus Silene
-
Desfeux C., Maurice S., Henry J.P., Lejeune B., and Gouyon P.H. Evolution of reproductive systems in the genus Silene. Proc. R. Soc. Lond. B, Biol. Sci. 263 (1996) 409-414
-
(1996)
Proc. R. Soc. Lond. B, Biol. Sci.
, vol.263
, pp. 409-414
-
-
Desfeux, C.1
Maurice, S.2
Henry, J.P.3
Lejeune, B.4
Gouyon, P.H.5
-
16
-
-
34250760986
-
The origin and number of introductions of the Hawaiian endemic Silene species (Caryophyllaceae)
-
Eggens F., Popp M., Nepokroeff M., Wagner W.L., and Oxelman B. The origin and number of introductions of the Hawaiian endemic Silene species (Caryophyllaceae). Am. J. Bot. 94 (2007) 210-218
-
(2007)
Am. J. Bot.
, vol.94
, pp. 210-218
-
-
Eggens, F.1
Popp, M.2
Nepokroeff, M.3
Wagner, W.L.4
Oxelman, B.5
-
17
-
-
0242487486
-
Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
-
Erixon P., Svennblad B., Britton T., and Oxelman B. Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics. Syst. Biol. 52 (2003) 665-673
-
(2003)
Syst. Biol.
, vol.52
, pp. 665-673
-
-
Erixon, P.1
Svennblad, B.2
Britton, T.3
Oxelman, B.4
-
18
-
-
38949179825
-
-
Erixon, P., Oxelman, B., 2008. Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene. PLoS ONE 3(1) e1386. doi:10.1371/journal.pone.0001386.
-
Erixon, P., Oxelman, B., 2008. Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene. PLoS ONE 3(1) e1386. doi:10.1371/journal.pone.0001386.
-
-
-
-
19
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein J. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27 (1978) 401-410
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
20
-
-
22144479069
-
Evolutionary history of Silene latifolia sex chromosomes revealed by genetic mapping of four genes
-
Filatov D.A. Evolutionary history of Silene latifolia sex chromosomes revealed by genetic mapping of four genes. Genetics 170 (2005) 975-979
-
(2005)
Genetics
, vol.170
, pp. 975-979
-
-
Filatov, D.A.1
-
21
-
-
33947582418
-
Reticulate phylogenetics and phytogeographical structure of Heliosperma (Sileneae, Caryophyllaceae) inferred from chloroplast and nuclear DNA sequences
-
Frajman B., and Oxelman B. Reticulate phylogenetics and phytogeographical structure of Heliosperma (Sileneae, Caryophyllaceae) inferred from chloroplast and nuclear DNA sequences. Mol. Phylogenet. Evol. 43 (2007) 140-155
-
(2007)
Mol. Phylogenet. Evol.
, vol.43
, pp. 140-155
-
-
Frajman, B.1
Oxelman, B.2
-
22
-
-
0041834716
-
Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm
-
Goremykin V.V., Hirsch-Ernst K.I., Wölfl S., and Hellwig F.H. Analysis of the Amborella trichopoda chloroplast genome sequence suggests that Amborella is not a basal angiosperm. Mol. Biol. Evol. 20 (2003) 1499-1505
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1499-1505
-
-
Goremykin, V.V.1
Hirsch-Ernst, K.I.2
Wölfl, S.3
Hellwig, F.H.4
-
23
-
-
0033666273
-
Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
-
Graham S.W., and Olmstead R.G. Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms. Am. J. Bot. 87 (2000) 1712-1730
-
(2000)
Am. J. Bot.
, vol.87
, pp. 1712-1730
-
-
Graham, S.W.1
Olmstead, R.G.2
-
24
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
25
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
Hillis D.M., and Bull J.J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42 (1993) 182-192
-
(1993)
Syst. Biol.
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
27
-
-
0003649975
-
-
Holmgren K.P., Holmgren H.N., and Barnett C.L. (Eds), International Association for Plant Taxonomy, New York Botanical Garden, New York
-
In: Holmgren K.P., Holmgren H.N., and Barnett C.L. (Eds). Index Herbariorum 1: The Herbaria of the World (1990), International Association for Plant Taxonomy, New York Botanical Garden, New York
-
(1990)
Index Herbariorum 1: The Herbaria of the World
-
-
-
28
-
-
0033792196
-
Intratetrad mating, heterozygosity, and the maintenance of deleterious alleles in Microbotryum violaceum (=Ustilago violacea)
-
Hood M.E., and Antonovics J. Intratetrad mating, heterozygosity, and the maintenance of deleterious alleles in Microbotryum violaceum (=Ustilago violacea). Heredity 85 (2000) 231-241
-
(2000)
Heredity
, vol.85
, pp. 231-241
-
-
Hood, M.E.1
Antonovics, J.2
-
29
-
-
33845752932
-
Nonneutral evolution of organelle genes in Silene vulgaris
-
Houliston G.J., and Olson M.S. Nonneutral evolution of organelle genes in Silene vulgaris. Genetics 174 (2006) 1983-1994
-
(2006)
Genetics
, vol.174
, pp. 1983-1994
-
-
Houliston, G.J.1
Olson, M.S.2
-
30
-
-
0035861456
-
Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck J.P., Ronquist F., Nielsen R., and Bollback J.P. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294 (2001) 2310-2314
-
(2001)
Science
, vol.294
, pp. 2310-2314
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, J.P.4
-
31
-
-
0034849408
-
MrBayes: Bayesian inference of phylogeny
-
Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17 (2001) 754-755
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
32
-
-
11144277878
-
Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models
-
Huelsenbeck J.P., and Rannala B. Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst. Biol. 53 (2004) 904-913
-
(2004)
Syst. Biol.
, vol.53
, pp. 904-913
-
-
Huelsenbeck, J.P.1
Rannala, B.2
-
33
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson D.H., and Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23 (2006) 254-267
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
34
-
-
33645744473
-
Pollination and seed predation by moths on Silene and allied Caryophyllaceae: evaluating a model system to study the evolution of mutualism
-
Kephart S., Reynolds R.J., Rutter M.T., Fenster C.B., and Dudash M.R. Pollination and seed predation by moths on Silene and allied Caryophyllaceae: evaluating a model system to study the evolution of mutualism. New Phytol. 169 (2006) 667-680
-
(2006)
New Phytol.
, vol.169
, pp. 667-680
-
-
Kephart, S.1
Reynolds, R.J.2
Rutter, M.T.3
Fenster, C.B.4
Dudash, M.R.5
-
35
-
-
29144475752
-
The tobacco plastid accD gene is essential and is required for leaf development
-
Kode V., Mudd E.A., Iamtham S., and Day A. The tobacco plastid accD gene is essential and is required for leaf development. Plant J. 44 (2005) 237-244
-
(2005)
Plant J.
, vol.44
, pp. 237-244
-
-
Kode, V.1
Mudd, E.A.2
Iamtham, S.3
Day, A.4
-
36
-
-
0042823973
-
The plastid clpP1 protease gene is essential for plant development
-
Kuroda H., and Maliga P. The plastid clpP1 protease gene is essential for plant development. Nature 425 (2003) 86-89
-
(2003)
Nature
, vol.425
, pp. 86-89
-
-
Kuroda, H.1
Maliga, P.2
-
37
-
-
0035527396
-
A likelihood approach to estimating phylogeny from discrete morphological character data
-
Lewis P.O. A likelihood approach to estimating phylogeny from discrete morphological character data. Syst. Biol. 50 (2001) 913-925
-
(2001)
Syst. Biol.
, vol.50
, pp. 913-925
-
-
Lewis, P.O.1
-
38
-
-
19044373497
-
Polytomies and Bayesian phylogenetic inference
-
Lewis P.O., Holder M.T., and Holsinger K.E. Polytomies and Bayesian phylogenetic inference. Syst. Biol. 54 (2005) 241-253
-
(2005)
Syst. Biol.
, vol.54
, pp. 241-253
-
-
Lewis, P.O.1
Holder, M.T.2
Holsinger, K.E.3
-
39
-
-
44949196184
-
-
Lowry, R., 2006. VassarStats, Web site for statistical computation. Available from: .
-
Lowry, R., 2006. VassarStats, Web site for statistical computation. Available from: .
-
-
-
-
40
-
-
13444251528
-
RDP2: recombination detection and analysis from sequence alignments
-
Martin D.P., Williamson C., and Posada D. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21 (2005) 260-262
-
(2005)
Bioinformatics
, vol.21
, pp. 260-262
-
-
Martin, D.P.1
Williamson, C.2
Posada, D.3
-
41
-
-
22144448572
-
Evidence for paternal transmission and heteroplasmy in the mitochondrial genome of Silene vulgaris, a gynodioecious plant
-
McCauley D.E., Bailey M.F., Sherman N.A., and Darnell M.Z. Evidence for paternal transmission and heteroplasmy in the mitochondrial genome of Silene vulgaris, a gynodioecious plant. Heredity 95 (2005) 50-58
-
(2005)
Heredity
, vol.95
, pp. 50-58
-
-
McCauley, D.E.1
Bailey, M.F.2
Sherman, N.A.3
Darnell, M.Z.4
-
42
-
-
0000596691
-
Interspecific chloroplast recombination in a Nicotiana somatic hybrid
-
Medgyesy P., Fejes E., and Maliga P. Interspecific chloroplast recombination in a Nicotiana somatic hybrid. Proc. Natl. Acad. Sci. USA 82 (1985) 6960-6964
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 6960-6964
-
-
Medgyesy, P.1
Fejes, E.2
Maliga, P.3
-
43
-
-
34548568981
-
Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants
-
Mower J.P., Touzet P., Gummow J.S., Delph L.F., and Palmer J.D. Extensive variation in synonymous substitution rates in mitochondrial genes of seed plants. BMC Evol. Biol. 7 (2007) 135
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 135
-
-
Mower, J.P.1
Touzet, P.2
Gummow, J.S.3
Delph, L.F.4
Palmer, J.D.5
-
44
-
-
33244488048
-
Incorporating information from length-mutational events into phylogenetic analysis
-
Müller K. Incorporating information from length-mutational events into phylogenetic analysis. Mol. Phylogenet. Evol. 38 (2006) 667-676
-
(2006)
Mol. Phylogenet. Evol.
, vol.38
, pp. 667-676
-
-
Müller, K.1
-
45
-
-
4944236760
-
Chloroplast phylogeny indicates that bryophytes are monophyletic
-
Nishiyama T., Wolf P.G., Kugita M., Sinclair R.B., Sugita M., Sugiura C., Wakasugi T., Yamada K., Yoshinaga K., Yamaguchi K., Ueda K., and Hasebe M. Chloroplast phylogeny indicates that bryophytes are monophyletic. Mol. Biol. Evol. 21 (2004) 1813-1819
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1813-1819
-
-
Nishiyama, T.1
Wolf, P.G.2
Kugita, M.3
Sinclair, R.B.4
Sugita, M.5
Sugiura, C.6
Wakasugi, T.7
Yamada, K.8
Yoshinaga, K.9
Yamaguchi, K.10
Ueda, K.11
Hasebe, M.12
-
46
-
-
44949182956
-
-
Nylander, J.A.A., 2005a. MrAIC.pl v. 1.4.2: software distributed by the author. School of Computational Science, Florida State University.
-
Nylander, J.A.A., 2005a. MrAIC.pl v. 1.4.2: software distributed by the author. School of Computational Science, Florida State University.
-
-
-
-
47
-
-
44949147492
-
-
Nylander, J.A.A., 2005b. BootPHYML v. 3.4: software distributed by the author. School of Computational Science, Florida State University.
-
Nylander, J.A.A., 2005b. BootPHYML v. 3.4: software distributed by the author. School of Computational Science, Florida State University.
-
-
-
-
48
-
-
0029185602
-
Generic boundaries in the tribe Sileneae (Caryophyllaceae) as inferred from nuclear rDNA sequences
-
Oxelman B., and Lidén M. Generic boundaries in the tribe Sileneae (Caryophyllaceae) as inferred from nuclear rDNA sequences. Taxon 44 (1995) 525-542
-
(1995)
Taxon
, vol.44
, pp. 525-542
-
-
Oxelman, B.1
Lidén, M.2
-
49
-
-
0029844128
-
RAPD patterns, nrDNA ITS sequences and morphological patterns in Silene section Sedoideae (Caryophyllaceae)
-
Oxelman B. RAPD patterns, nrDNA ITS sequences and morphological patterns in Silene section Sedoideae (Caryophyllaceae). Plant Syst. Evol. 201 (1996) 93-116
-
(1996)
Plant Syst. Evol.
, vol.201
, pp. 93-116
-
-
Oxelman, B.1
-
50
-
-
0030919759
-
Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae)
-
Oxelman B., Lidén M., and Berglund D. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Syst. Evol. 206 (1997) 393-410
-
(1997)
Plant Syst. Evol.
, vol.206
, pp. 393-410
-
-
Oxelman, B.1
Lidén, M.2
Berglund, D.3
-
51
-
-
0034426080
-
A revised generic classification of the tribe Sileneae (Caryophyllaceae)
-
Oxelman B., Lidén M., Rabeler R.K., and Popp M. A revised generic classification of the tribe Sileneae (Caryophyllaceae). Nord. J. Bot. 20 (2001) 743-748
-
(2001)
Nord. J. Bot.
, vol.20
, pp. 743-748
-
-
Oxelman, B.1
Lidén, M.2
Rabeler, R.K.3
Popp, M.4
-
53
-
-
33645003520
-
The impact of intragenic recombination on phylogenetic reconstruction at the sectional level in Eucalyptus when using a single copy nuclear gene (cinnamoyl CoA reductase)
-
Poke F., Martin D.P., Steane D.A., Vaillancourt R.E., and Reid J.B. The impact of intragenic recombination on phylogenetic reconstruction at the sectional level in Eucalyptus when using a single copy nuclear gene (cinnamoyl CoA reductase). Mol. Phylogenet. Evol. 39 (2006) 160-170
-
(2006)
Mol. Phylogenet. Evol.
, vol.39
, pp. 160-170
-
-
Poke, F.1
Martin, D.P.2
Steane, D.A.3
Vaillancourt, R.E.4
Reid, J.B.5
-
54
-
-
0034847822
-
Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences
-
Popp M., and Oxelman B. Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences. Mol. Phylogenet. Evol. 20 (2001) 474-481
-
(2001)
Mol. Phylogenet. Evol.
, vol.20
, pp. 474-481
-
-
Popp, M.1
Oxelman, B.2
-
55
-
-
12444255253
-
Evolution of a rna polymerase gene family in Silene (caryophyllaceae)-incomplete concerted evolution and topological congruence among paralogues
-
Popp M., and Oxelman B. Evolution of a rna polymerase gene family in Silene (caryophyllaceae)-incomplete concerted evolution and topological congruence among paralogues. Syst. Biol. 53 (2004) 914-932
-
(2004)
Syst. Biol.
, vol.53
, pp. 914-932
-
-
Popp, M.1
Oxelman, B.2
-
56
-
-
34250737464
-
Origin and evolution of North American polyploid Silene (Caryophyllaceae)
-
Popp M., and Oxelman B. Origin and evolution of North American polyploid Silene (Caryophyllaceae). Am. J. Bot. 94 (2007) 330-349
-
(2007)
Am. J. Bot.
, vol.94
, pp. 330-349
-
-
Popp, M.1
Oxelman, B.2
-
57
-
-
20744455385
-
Origin and evolution of a circumpolar polyploid species complex in Silene (Caryophyllaceae) inferred from low copy nuclear RNA polymerase introns, rDNA, and chloroplast DNA
-
Popp M., Erixon P., Eggens F., and Oxelman B. Origin and evolution of a circumpolar polyploid species complex in Silene (Caryophyllaceae) inferred from low copy nuclear RNA polymerase introns, rDNA, and chloroplast DNA. Syst. Bot. 30 (2005) 302-313
-
(2005)
Syst. Bot.
, vol.30
, pp. 302-313
-
-
Popp, M.1
Erixon, P.2
Eggens, F.3
Oxelman, B.4
-
58
-
-
23944484422
-
Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes
-
Qiu Y.-L., Dombrovska O., Lee J., Li L., Whitlock B.A., Bernasconi-Quadroni F., Rest J.S., Davis C.C., Borsch T., Hilu K.W., Renner S.S., Soltis D.E., Soltis P.S., Zanis M.J., Cannone J.J., Gutell R.R., Powell M., Savolainen V., Chatrou L.W., and Chase M.W. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes. Int. J. Plant Sci. 166 (2005) 815-842
-
(2005)
Int. J. Plant Sci.
, vol.166
, pp. 815-842
-
-
Qiu, Y.-L.1
Dombrovska, O.2
Lee, J.3
Li, L.4
Whitlock, B.A.5
Bernasconi-Quadroni, F.6
Rest, J.S.7
Davis, C.C.8
Borsch, T.9
Hilu, K.W.10
Renner, S.S.11
Soltis, D.E.12
Soltis, P.S.13
Zanis, M.J.14
Cannone, J.J.15
Gutell, R.R.16
Powell, M.17
Savolainen, V.18
Chatrou, L.W.19
Chase, M.W.20
more..
-
59
-
-
44949094770
-
-
Rambaut, A. 1996. Se-Al: Sequence Alignment Editor. Available from: .
-
Rambaut, A. 1996. Se-Al: Sequence Alignment Editor. Available from: .
-
-
-
-
60
-
-
33748895571
-
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
-
Rice D.W., and Palmer J.D. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol. 4 (2006) 31
-
(2006)
BMC Biol.
, vol.4
, pp. 31
-
-
Rice, D.W.1
Palmer, J.D.2
-
61
-
-
0036821739
-
Taxon sampling and seed plant phylogeny
-
Rydin C., and Källersjö M. Taxon sampling and seed plant phylogeny. Cladistics 18 (2002) 485-513
-
(2002)
Cladistics
, vol.18
, pp. 485-513
-
-
Rydin, C.1
Källersjö, M.2
-
62
-
-
0035082732
-
The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization
-
Schmitz-Linneweber C., Maier R.M., Alcaraz J.-P., Cottet A., Herrmann R.G., and Mache R. The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization. Plant Mol. Biol. 45 (2001) 307-315
-
(2001)
Plant Mol. Biol.
, vol.45
, pp. 307-315
-
-
Schmitz-Linneweber, C.1
Maier, R.M.2
Alcaraz, J.-P.3
Cottet, A.4
Herrmann, R.G.5
Mache, R.6
-
63
-
-
19944430021
-
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
-
Shaw J., Lickey E.B., Beck J.T., Farmer S.B., Liu W., Miller J., Siripun K.C., Winder C.T., Schilling E.E., and Small R.L. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Am. J. Bot. 92 (2005) 142-166
-
(2005)
Am. J. Bot.
, vol.92
, pp. 142-166
-
-
Shaw, J.1
Lickey, E.B.2
Beck, J.T.3
Farmer, S.B.4
Liu, W.5
Miller, J.6
Siripun, K.C.7
Winder, C.T.8
Schilling, E.E.9
Small, R.L.10
-
64
-
-
34250767339
-
Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III
-
Shaw J., Lickey E.B., Schilling E.E., and Small R.L. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am. J. Bot. 94 (2007) 275-288
-
(2007)
Am. J. Bot.
, vol.94
, pp. 275-288
-
-
Shaw, J.1
Lickey, E.B.2
Schilling, E.E.3
Small, R.L.4
-
65
-
-
0034350427
-
Gaps as characters in sequence-based phylogenetic analyses
-
Simmons M.P., and Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 49 (2000) 369-381
-
(2000)
Syst. Biol.
, vol.49
, pp. 369-381
-
-
Simmons, M.P.1
Ochoterena, H.2
-
66
-
-
0035527375
-
Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses
-
Simmons M.P., Ochoterena H., and Carr T.G. Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses. Syst. Biol. 50 (2001) 454-462
-
(2001)
Syst. Biol.
, vol.50
, pp. 454-462
-
-
Simmons, M.P.1
Ochoterena, H.2
Carr, T.G.3
-
67
-
-
38949168470
-
Evolutionary rate variation at multiple levels of biological organization in plant mitochondrial DNA
-
Sloan D.B., Barr C.M., Olson M.S., Keller S.R., and Taylor D.R. Evolutionary rate variation at multiple levels of biological organization in plant mitochondrial DNA. Mol. Biol. Evol. 25 (2008) 243-246
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 243-246
-
-
Sloan, D.B.1
Barr, C.M.2
Olson, M.S.3
Keller, S.R.4
Taylor, D.R.5
-
68
-
-
4644350604
-
Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics
-
Soltis D.E., Albert V.A., Savolainen V., Hilu K., Qiu Y.-L., Chase M.W., Farris J.S., Stefanovic S., Rice D.W., Palmer J.D., and Soltis P.S. Genome-scale data, angiosperm relationships, and 'ending incongruence': a cautionary tale in phylogenetics. Trends Plant Sci. 9 (2004) 477-483
-
(2004)
Trends Plant Sci.
, vol.9
, pp. 477-483
-
-
Soltis, D.E.1
Albert, V.A.2
Savolainen, V.3
Hilu, K.4
Qiu, Y.-L.5
Chase, M.W.6
Farris, J.S.7
Stefanovic, S.8
Rice, D.W.9
Palmer, J.D.10
Soltis, P.S.11
-
69
-
-
0037015045
-
Ancient mitochondrial haplotypes and evidence for intragenic recombination in a gynodioecious plant
-
Städler T., and Delph L.F. Ancient mitochondrial haplotypes and evidence for intragenic recombination in a gynodioecious plant. Proc. Natl. Acad. Sci. USA 99 (2002) 11730-11735
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 11730-11735
-
-
Städler, T.1
Delph, L.F.2
-
70
-
-
10644253746
-
Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?
-
Stefanovic S., Rice D.W., and Palmer J.D. Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?. BMC Evol. Biol. 4 (2004) 35
-
(2004)
BMC Evol. Biol.
, vol.4
, pp. 35
-
-
Stefanovic, S.1
Rice, D.W.2
Palmer, J.D.3
-
71
-
-
44949119855
-
-
Swofford, D.L., 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, MA.
-
Swofford, D.L., 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer, Sunderland, MA.
-
-
-
-
73
-
-
4143061437
-
Gender in plants: sex chromosomes are emerging from the fog
-
Vyskot B., and Hobza R. Gender in plants: sex chromosomes are emerging from the fog. Trends Genet. 20 (2004) 432-438
-
(2004)
Trends Genet.
, vol.20
, pp. 432-438
-
-
Vyskot, B.1
Hobza, R.2
-
74
-
-
8844267682
-
Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: implications for plant molecular systematics
-
Wolfe A.D., and Randle C.P. Recombination, heteroplasmy, haplotype polymorphism, and paralogy in plastid genes: implications for plant molecular systematics. Syst. Bot. 29 (2004) 1011-1020
-
(2004)
Syst. Bot.
, vol.29
, pp. 1011-1020
-
-
Wolfe, A.D.1
Randle, C.P.2
-
75
-
-
22844452772
-
Branch-length prior influences Bayesian posterior probability of phylogeny
-
Yang Z., and Rannala B. Branch-length prior influences Bayesian posterior probability of phylogeny. Syst. Biol. 54 (2005) 455-470
-
(2005)
Syst. Biol.
, vol.54
, pp. 455-470
-
-
Yang, Z.1
Rannala, B.2
|