The plastid clpP1 protease gene is essential for plant development

Nature

Volumn 425, Issue 6953, 2003, Pages 86-89

  Kuroda, Hiroshi ^a   Maliga, Pal ^a,b  

^a RUTGERS UNIVERSITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOSYNTHESIS; LIPIDS; MUTAGENESIS; PHOTOSYNTHESIS; PLANTS (BOTANY); PROTEINS; STARCH;

PLASTIDS;

GENETIC ENGINEERING;

AMINO ACID; CLPP1 PROTEASE; CRE RECOMBINASE; GENE PRODUCT; LIPID; PIGMENT; PROTEIN SUBUNIT; PROTEIN YCF1; PROTEIN YCF2; PROTEINASE; STARCH; UNCLASSIFIED DRUG;

GENETICS; PLANT;

ARTICLE; BIOSYNTHESIS; CHLOROPLAST; CONTROLLED STUDY; GENE DELETION; GENE IDENTIFICATION; GENETIC TRANSCRIPTION; GENETIC TRANSFORMATION; GENOME; LETHAL GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHOTOSYNTHESIS; PLANT DEVELOPMENT; PLANT GENETICS; PLASTID; PRIORITY JOURNAL; PROTEIN DEGRADATION; RNA TRANSLATION; SEEDLING; SHOOT; TOBACCO;

ENDOPEPTIDASES; GENE DELETION; GENES, ESSENTIAL; GENES, PLANT; GENOTYPE; INTEGRASES; MOLECULAR SEQUENCE DATA; PHENOTYPE; PLANT SHOOTS; PLASTIDS; SEEDS; TOBACCO; TRANSFORMATION, GENETIC; VIRAL PROTEINS;

EMBRYOPHYTA; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM;

EID: 0042823973     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature01909     Document Type: Article

References (30)

1. Sugiura, M. The chloroplast genome. Plant Mol Biol. 19, 149-168 (1992).
2. Leister, D. Chloroplast research in the genomic era. Trends Genet. 19, 47-56 (2003).
3. Martin W. et al. Evolutionary analysis of Arabidopsis, cyanobacteria, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl Acad. Sci. USA 99, 12246-12251 (2002).
4. McElver, J. et al. Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana. Genetics 159, 1751-1763 (2001),
5. Budziszewski G. J. et al. Arabidopsis genes essential for seedling viability: Isolation of insertional mutants and molecular cloning. Genetics 159, 1765-1778 (2001).
6. Maréchal, E. Chloroplast biogenesis and function are first in the list of essential Arabidopsis genes, Trends Plant Sci. 7, 99-100 (2002).
7. Bock, R. in Progress in Botany (eds Esser, K., Lüttge, U., Beyschlag, W. & Hellwig, F.) 106-131 (Springer, Berlin, 2002).
8. Hager, M., Hermann, M., Biehler, K., Krieger-Liszkay, A. & Bock, R. Lack of the small plastid-encoded Psb J polypeptide results in a defective water-splitting apparatus of photosystem II, reduced photosystem I levels, and hypersensitivity to light. J. Biol. Chem. 277, 14031-14039 (2002).
9. Swiatek, M. et al. Effects of selectivc inactivation of individual genes for low-molecular-mass subunits on the assembly ofphotosysm II, as revealed by chloroplast transformation: The psbEFJ operon in Nicotiana tabacum. Mol. Genet. Genomics 268, 699-710 (2003).
10. Swiatek, M. et al PCR analysis of pulse-field gel electrophoresis-purified plastid DNA, a sensitive tool to judge the hetero-/homoplastomic status of plastid transformants. Curr. Genet. 43, 45-53 (2003).
11. Corneille, S., Lutz, K., Svab, Z. & Maliga, P. Efficient elimination of selectable marker genes from the plastid genome by the CRE-lox site-specific recombination system. Plant J. 72, 171-178 (2001).
12. Hajdukiewicz, P. T. J., Gilbertson, L. & Staub, J. M. Multiple pathways for Cre/lox-mediated recombination in plastids. Plant J. 27, 161-170 (2001).
13. Shikanai, T. et al. The chloroplast clpP gene, encoding a proteolytic subunit of ATP-dependent protease, is indispensable for chloroplast development in tobacco. Plant Cell Physiol. 42, 264-273 (2001).
14. Adam, Z. & Clarke, A. K. Cutting edge of chloroplast proteolysis. Trends Plant Sci. 7, 451-456 (2002).
15. Ow, D. W. Recombinase-directed plant transformation for the post-genomic era. Plant Mol. Biol. 48, 183-200 (2002).
16. Peltier, J. B., Ytterberg, J., Liberles, D. A., Roepstroff, P. & van Wijk, K. J. Identification of a 350kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of arabidopsis thaliana. J. Biol. Chem. 276, 16318-16327 (2001).
17. Svab, Z. & Maliga, P. High-frequency plastid transformation in tobacco by selection for a chimeric aadA gene. Proc. Natl Acad. Sci. USA 90, 913-917 (1993).
18. Springer, P. S. Gene traps: Tools for plant development and genomics. Plant Cell 12, 1007-1020 (2000).
19. Corneille, S., Lutz, K. A., Azhagiri, A. K. & Maliga, P. Identification of functional lox sites in the plastid genome. Plant J. (in the press).
20. Kuroda, II. & Maliga, P. Overexpression of the clpP 5′-untranslated region in a chimeric context causes a mutant phenotype, suggesting competition for a clpP-specific RNA maturation factor in tobacco chloroplasts. Plant Physiol. 129, 1600-1606 (2002).
21. Zubko, M. K. & Day, A. Stable albinism induced without mutagenesis: A model for ribosome-free plastid inheritance. Plant J. 15, 265-271 (1998).
22. Walbot, V. & Coc, E. H. J. Nuclear gene iojap conditions a programmed change to ribosome-less plastids in Zea mays. Proc. Natl Acad. Sci. USA 76, 2760-2764 (1979).
23. Han, C. D., Coe, E, H. J. & Martienssen, R. A. Molecular cloning and characterization of the maize iojap (ij), a pattern striping in maize, EMBO J. 11, 4037-4046 (1992).
24. Hess, W. R., Prombona, A., Fieder, B., Subramanian, A. R. & Börner, T. Chloroplast rpsl5 and the rpoB/C1/C2 gene cluster are strongly transcribed in ribosome-deficient plastids: Evidence for a functioning non-chloroplast-encoded RNA polymerase, EMBO J. 12, 563-571 (1993).
25. Cahoon, A. B., Cunningham, K. A. & Stern, D. B. The plastid clpP gene may not be essential for plant cell viability. Plant Cell Physiol. 44, 93-95 (2003).
26. Wolfe, K. H., Morden, C. W. & Palmer, J. D. Function and evolution of a minimal plastid genome from a nonphotosynthetic parasitic plant. Proc. Natl Acad. Sci. USA 89, 10648-10652 (1992),
27. Wickner, S., Maurizi, M. R. & Gottesman, S. Posttranslational quality control: Folding, refolding, and degrading proteins. Science 286, 1888-1893 (1999).
28. Flynn, J. M., Neher, S, B., Kim, Y.-I., Sauer, R. T. & Baker, T. A. Proteomic discovery of cellular substrates of the CIpXP protease reveals five classes of ClpX-recognition signals. Mol. Cell 11, 671-683 (2003).
29. s for degradation by ClpXP. Genes Dev. 15, 627-637 (2001).
30. Staub. J. M. & Maliga, P. Accumulation of D1 polypeptide in tobacco plastids is regulated via the untranslated region of tire psbA mRNA. EMBO J. 12, 601-606 (1993).