Phylogenetic relationships within Zaluzianskya (Scrophulariaceae s.s., tribe Manuleeae): Classification based on DNA sequences from multiple genomes and implications for character evolution and biogeography

Systematic Botany

Volumn 30, Issue 1, 2005, Pages 196-215

  Archibald, Jenny K ^a,b   Mort, Mark E ^b   Wolfe, Andrea D ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b UNIVERSITY OF KANSAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MIRABILIS; NEOTRICHIA; REYEMIA; SCROPHULARIACEAE; VILLOSA; ZALUZIANSKYA; ZALUZIANSKYA GRACILIS; ZALUZIANSKYA VILLOSA;

EID: 14244253383     PISSN: 03636445     EISSN: None     Source Type: Journal    
DOI: 10.1600/0363644053661977     Document Type: Article

References (78)

1. ACOCKS, J. P. H. 1953. Veld types of South Africa. Memoirs of the Botanical Survey of South Africa 28: 1-192.
2. ANDERSSON, M. 1999. Hybridization and skua phylogeny. Proceedings of the Royal Society of London Series B, Biological Sciences 266: 1579-1585.
3. ARCHIBALD, J. K., A. D. WOLFE, and S. D. JOHNSON. 2004. Hybridization and gene flow between a day- and night-flowering species of Zaluzianskya (Scrophulariaceae s.s., tribe Manuleeae). American Journal of Botany 91: 1333-1344.
4. AXELROD, D. I. and P. H. RAVEN. 1978. Late cretaceous and tertiary vegetation history of Africa. Pp. 77-130 in Biogeography and ecology of southern Africa part 1, ed. M. J. A. Werger. The Hague: W. Junk.
5. BAKKER, F. T., A. CULHAM, P. HETTIARACHI, T. TOULOUMENIDOU, and M. GIBBY. 2004. Phylogeny of Pelargonium (Geraniaceae) based on DNA sequences from three genomes. Taxon 53: 17-28.
6. BALDWIN, B. G., M. J. SANDERSON, J. M. PORTER, M. F. WOJCIECHOWSKI, C. S. CAMPBELL, and M. J. DONOGHUE. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
7. BARKER, F. K. and F. M. LUTZONI. 2002. The utility of the incongraence length difference test. Systematic Biology 51: 625-637.
8. BENTHAM, G. 1846. Scrophulariaceae. Pp. 186-586. in Prodromus systematis naturalis regni vegetabilis pars 10, ed. A. P. de Candolle. Paris: Treuttel et Würtz.
9. BREMER, K. 1988. The limits of amino acid sequence data in angiosperm phylogenic reconstruction. Evolution 42: 795-803.
10. CHESSELET, P., G. F. SMITH, and A. E. VAN WYK. 2002. A new tribal classification of Mesembryanthemaceae: evidence from floral nectaries. Taxon 51: 295-308.
11. DARLU, P. and G. LECOINTRE. 2002. When does the incongruence length difference test fail? Molecular Biology and Evolution 19: 432-437.
12. DE QUEIROZ, K. and M. J. DONOGHUE. 1988. Phylogenetic systematics and the species problem. Cladistics 4: 317-338.
13. DEAN, W. R. J. and S. J. MILTON. 1995. Plant and invertebrate assemblages on old fields in the arid southern Karoo, South Africa. African Journal of Ecology 33: 1-13.
14. DIELS, L. 1897. Beiträge zur Kenntnis der Scrophulariaceen Afrikas. Botanische Jahrbücher für Systematik 23: 471-517.
15. DONOGHUE, M. J. 1985. A critique of the biological species concept and recommendations for a phylogenetic alternative. The Bryologist 88: 172-181.
16. DOWNIE, S. R., D. S. KATZ-DOWNIE, and M. F. WATSON. 2000. A phylogeny of the flowering plant family Apiaceae based on chloroplast DNA rpl16 and rpoC1 intron sequences: towards a suprageneric classification of subfamily Apioideae. American Journal of Botany 87: 273-292.
17. DOYLE, J. J. and J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry Bulletin 19: 11-15.
18. EHRLÉN, J. and K. LEHTILÄ. 2002. How perennial are perennial plants? Oikos 98: 308-322.
19. ERIKSSON, T. 1999. AutoDecay ver. 4.0 (program distributed by the author). Bergius Foundation, Royal Swedish Academy of Sciences, Stockholm.
20. ESLER, K. J., P. W. RUNDEL, and P. VORSTER. 1999. Biogeography of prostrate-leaved geophytes in semi-arid South Africa: hypotheses on functionality. Plant Ecology 142: 105-120.
21. rd edition. New York; Pergamon Press.
22. FARRIS, J. S., M. KÄLLERSJÖ, A. G. KLUGE, and C. BULT. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
23. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
24. GARNIER, E. and G. LAURENT. 1994. Leaf anatomy, specific mass and water content in congeneric annual and perennial grass species. New Phytologist 128: 725-736.
25. GIBBS RUSSELL, G. E. 1987. Preliminary floristic analysis of the major biomes in southern Africa. Bothalia 17: 213-227.
26. GOLDBLATT, P. and J. C. MANNING. 2000. The long-proboscid fly pollination system in southern Africa. Annals of the Missouri Botanical Garden 87: 146-170.
27. _ and _. 2002. Plant diversity of the Cape region of southern Africa. Annals of the Missouri Botanical Garden 89: 281-302.
28. _, and P. BERNHARDT. 2001. Radiation of pollination systems in Gladiolus (Iridaceae: Crocoideae) in southern Africa. Annals of the Missouri Botanical Garden 88: 713-734.
29. _, V. SAVOLAINEN, O. PORTEOUS, I. SOSTARIC, M. POWELL, G. REEVES, J. C. MANNING, T. G. BARRACLOUGH, and M. W. CHASE. 2002. Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions. Molecular Phylogenetics and Evolution 25: 341-360.
30. th edition. London: Longman.
31. GROSS, K L., D. MARUCA, and K. PREGITZER. 1992. Seedling growth and root morphology of plants with different life-histories. New Phytologist 120: 535-542.
32. HEDBERG, O. 1970. The genus Zaluzianskya F. W. Schmidt (Scrophulariaceae) found in Tropical East Africa. Botaniska Notiser 123: 512-517.
33. MILLIARD, O. M. 1992. Miscellaneous new names and combinations in Scrophulariaceae - Manuleae. Edingburgh Journal of Botany 49: 297.
34. _. 1994. The Manuleae. A tribe of Scrophulariaceae. Edinburgh: Edinburgh University Press.
35. _ and B. L. BURTT. 1983. Zaluzianskya (Scrophulariaceae) in south eastern Africa and the correct application of the names Z. capensis and Z. maritima. Notes from the Royal Botanic Garden Edinburgh 41: 1-13.
36. HOLDER, M. T., J. A. ANDERSON, and A. K. HOLLOWAY. 2001. Difficulties in detecting hybridization. Systematic Biology 50: 978-982.
37. JOHNSON, L. A. and D. E. SOLTIS. 1998. Assessing congruence: empirical examples from molecular data. Pp. 297-348 in Molecular systematics of plants II: DNA sequencing, eds. D. E. Soltis, P. S. Soltis, and J. J. Doyle. Boston: Kluwer Academic Publishers.
38. JOHNSON, S. D., T. J. EDWARDS, C. CARBUTT, and C. POTGIETER. 2002. Specialization for hawkmoth and long-proboscid fly pollination in Zaluzianskya section Nycterinia (Scrophulariaceae). Botanical Journal of the Linnean Society 138: 17-27.
39. _, H. P. LINDER, and K. E. STEINER. 1998. Phylogeny and radiation of pollination systems in Disa (Orchidaceae). American Journal of Botany 85: 402-411.
40. JONG, K. 1993. Variation in chromosome number in the Manuleae (Scrophulariaceae) and its cytotaxonomic implications. Edinburgh Journal of Botany 50: 365-379.
41. KELLOGG, E. A., R. APPELS, and R. J. MASON-GAMER. 1996. When genes tell different stories: the diploid genera of Triticeae (Gramineae). Systematic Botany 21: 321-347.
42. KIMBALL, R. T., D. J. CRAWFORD, and E. B. SMITH. 2003. Evolutionary processes in the genus Coreopsis: insights from molecular phylogenetics. Evolution 57: 52-61.
43. KORNHALL, P., N. HEIDARI, and B. BREMER. 2001. Selagineae and Manuleeae, two tribes or one? Phylogenetic studies in the Scrophulariaceae. Plant Systematics and Evolution 228: 199-218.
44. LINDER, H. P. 1996. Priorities for taxonomic research on the Cape flora. South African Journal of Science 92: 323-326.
45. _. 2003. The radiation of the Cape flora, southern Africa. Biological Reviews 78: 597-638.
46. _ and H. KURZWEIL. 1999. Orchids of southern Africa. Rotterdam: A. A. Balkema.
47. _ and D. M. MANN. 1998. The phylogeny and biogeography of Thamnochortus (Restionaceae). Botanical Journal of the Linnean Society 128: 319-357.
48. LUCKOW, M. 1995. Species concepts: assumptions, methods, and applications. Systematic Botany 20: 589-605.
49. MADDISON, D. R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Systematic Zoology 40: 315-328.
50. _ and W. P. MADDISON. 1992. MacClade: analysis of phylogeny and character evolution. Sunderland: Sinauer Associates Inc.
51. MADDISON, W. P. 1990. A method for testing the correlated evolution of two binary characters: are gains or losses concentrated on certain branches of a phylogenetic tree? Evolution 44: 539-557.
52. _. 1997. Gene trees in species trees. Systematic Biology 46: 523-536.
53. MASON-GAMER, R. J. and E. A. KELLOGG. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae. Systematic Biology 45: 524-545.
54. MCGREGOR, T. E. 1989. Pollination syndromes in the genus Zaluzianskya: Z. microsiphon (Kuntze) K. Schum, Z. glareosa Hilliard and Burtt, Z. ovata Walp. and Z. spathacea Benth. B.S. honours thesis, University of Natal, Pietermaritzburg, South Africa. p. 59.
55. OLMSTEAD, R. G. and J. A. SWEERE. 1994. Combining data in phylogenetic systematics: an empirical approach using three molecular data sets in the Solanaceae. Systematic Biology 43: 467-481.
56. RANDLE, C. P. 2004. The evolution and expression of rbcL in holoparasitic sister genera Harveya Hook. and Hyobanche L. (Orobanchaceae) and systematics and taxonomic revision of southern African species of Harveya. Ph.D. dissertation, Ohio State University, Columbus.
57. RAMBAUT, A. 1996. Se-Al sequence alignment editor, version 1.0a1. Oxford: Department of Zoology, University of Oxford.
58. RIESEBERG, L. H. and L. BROUILLET. 1994. Are many plant species paraphyletic? Taxon 43: 21-32.
59. RITZ, C. M., N. F. A. ZIMMERMAN, and F. H. HELLWIG. 2003. Phylogeny of subsect. Meleuphorbia (A. Berger) Pax & Hoffm. (Euphorbia L.) reflects the climatic regime in South Africa. Plant Systematics and Evolution 241: 245-259.
60. ROKAS, A., G. MELIKA, Y. ABE, J.-L. NIEVES-ALDREY, J. M. COOK, and G. N. STONE. 2003. Lifecycle closure, lineage sorting, and hybridization revealed in a phylogenetic analysis of European oak gallwasps (Hymenoptera: Cynipidae: Cynipini) using mitochondrial sequence data. Molecular Phylogenetics and Evolution 26: 36-45.
61. SANG, T. and Y. ZHONG. 2000. Testing hybridization hypotheses based on incongruent gene trees. Systematic Biology 49: 422-434.
62. SCHULZE, R. E., M. MAHARAJI, S. D. LYNCH, B. J. HOWE, and B. MELVIL-THOMAS. 1997. South African atlas of agrohydrology and climatology. Pretoria: Water Research Commission.
63. SEELANAN, T., A. SCHNABEL, and J. F. WENDEL. 1997. Congruence and consensus in the cotton tribe (Malvaceae). Systematic Botany 22: 259-290.
64. SIDDALL, M. E. 1997. Prior agreement: arbitration or arbitrary? Systematic Biology 46: 765-769.
65. SIMMONS, M. P. and H. OCHOTERENA. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
66. SMITH, G. F., A. E. VAN WYK, L. A. S. JOHNSON, and B.-E. VAN WYK. 1996. Southern African plant systematics: needs, priorities and actions. South African Journal of Science 92: 314-320.
67. SOLTIS, D. E. and P. S. SOLTIS. 1997. Phylogenetic relationships in Saxifragaceae sensu lato: a comparison of topologies based on 18S rDNA and rbcL sequences. American Journal of Botany 84: 504-522.
68. _ and _. 1998. Choosing an approach and an appropriate gene for phylogenetic analysis. Pp. 1-42 in Molecular systematics of plants II: DNA sequencing, eds. D. E. Soltis, P. S. Soltis, and J. J. Doyle. Boston: Kluwer Academic Publishers.
69. SOTA, T., R. ISHIKAWA, M. UJIIE, F. KUSUMOTO, and A. P. VOGLER. 2001. Extensive trans-species mitochondrial polymorphisms in the carabid beetles Carabus subgenus Ohomopterus caused by repeated introgressive hybridization. Molecular Ecology 10: 2833-2847.
70. SWOFFORD, D. L. 2003. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. Sunderland: Sinauer Associates.
71. TABERLET, P., L. GIELLY, G. PAUTOU, and J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
72. TAKHTAJAN, A. 1986. Floristic regions of the world. Berkeley: University of California Press.
73. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN, and D. G. HIGGINS. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882.
74. VAN OPPEN, M. J. H., B. J. MCDONALD, B. WILLIS, and D. J. MILLER. 2001. The evolutionary history of the coral genus Acropara (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence? Molecular Biology and Evolution 18: 1315-1329.
75. WELLER, S. G. and A. K. SAKAI. 1999. Using phylogenetic approaches for the analysis of plant breeding system evolution. Annual Review of Ecology and Systematics 30: 167-199.
76. WEN, J. and E. A. ZIMMER. 1996. Phylogeny and biogeography of Panax L. (the ginseng genus, Araliaceae): inferences from ITS sequences of the nuclear ribosomal DNA. Molecular Phylogenetics and Evolution 6: 167-177.
77. WENDEL, J. F. and J. J. DOYLE. 1998. Phylogenetic incongruence: window into genome history and molecular evolution. Pp. 265-296 in Molecular systematics of plants II: DNA sequencing, eds. D. E. Soltis, P. S. Soltis, and J. J. Doyle. Boston: Kluwer Academic Publishers.
78. WHEELER, Q. D. and K. C. NIXON. 1990. Another way of looking at the species problem: a reply to de Queiroz and Donoghue. Cladistics 6: 77-81.