Drosophila poly(ADP-Ribose) glycohydrolase mediates chromatin structure and SIR2-dependent silencing

Genetics

Volumn 172, Issue 1, 2006, Pages 363-371

  Tulin, Alexei ^a,b   Naumova, Natalia M ^a,b   Menon, Ammini K ^a,b   Spradling, Allan C ^b,c  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b FOX CHASE CANCER CENTER   (United States)

^c GEOPHYSICAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DIPHOSPHATE;

ARTICLE; CHROMATIN; CONTROLLED STUDY; GENE CONTROL; GENE EXPRESSION; GENE FUNCTION; GENE LOCATION; GENE REPRESSION; GENE SILENCING; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION;

ADENOSINE DIPHOSPHATE RIBOSE; ANIMALS; CELL NUCLEUS; CHROMATIN; DNA TRANSPOSABLE ELEMENTS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; FEMALE; GENE SILENCING; GLYCOSIDE HYDROLASES; HISTONE DEACETYLASES; MALE; MUTATION; PEPTIDE HYDROLASES; POLY(ADP-RIBOSE) POLYMERASES; RETROELEMENTS; SIRTUINS;

EID: 33644777616     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.049239     Document Type: Article

References (35)

1. ADAMS, M. D., S. E. CELNIKER, R. A. HOLT, C. A. EVANS, J. D. GOCAYNE et al., 2000 The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
2. ASTROM, S. U., T. W. CLINE and J. RINE, 2003 The Drosophila melanogaster Sir2(+) gene is nonessential and has only minor effects on position-effect variegation. Genetics 163: 931-937.
3. BARLOW, A. L., C. M. VAN DRUNEN, C. A. JOHNSON, S. TWEEDIE, A. BIRD et al., 2001 dSIR2 and dHDAC6: two novel, inhibitor-resistant deacetylases in Drosophila melanogaster. Exp. Cell Res. 265: 90-103.
4. CASSO, D., F. RAMIREZ-WEBER and T. B. KORNBERG, 2000 GFP-tagged balancer chromosomes for Drosophila melanogaster. Mech. Dev. 91: 451-454.
5. DAMMANN, R., R. LUCCHINI, T. KOLLER and J. M. SOGO, 1993 Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae. Nucleic Acids Res. 10: 2331-2338.
6. DE MURCIA, G., and S. SHALL, 2000 From DNA Damage and Stress Signaling to Cell Death: Poly(ADP-Ribosylation) Reactions. Oxford University Press, New York.
7. DENU, J. M., 2003 Linking chromatin function with metabolic networks: Sir2 family of NAD(+)-dependent deacetylases. Trends Biochem. Sci. 28: 41-48.
8. FISCHLE, W., Y. WANG and C. D. ALLIS, 2003 Histone and chromatin cross-talk. Curr. Opin. Cell Biol. 15: 172-183.
9. FLYBASE, 1999 The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 27: 85-88.
10. FRYE, R. A., 1999 Characterization of five human cDNAs with homology to the yeast SIR2 gene: Sir2-like proteins (sirtuins) metabolize NAD and may have protein ADP-ribosyltransferase activity. Biochem. Biophys. Res. Commun. 260: 273-279.
11. FURUYAMA, T., R. BANERJEE, T. R. BREEN and P. J. HARTE, 2004 SIR2 is required for Polycomb silencing and is associated with an E(Z) histone methyltransferase complex. Curr. Biol. 14: 1812-1821.
12. GALL, J. G., 2003 The centennial of the Cajal body. Nat. Rev. Mol. Cell Biol. 4: 975-980.
13. GERASIMOVA, T., and V. CORCES, 2001 Chromatin insulators and boundaries: effects on transcription and nuclear organization. Annu. Rev. Genet. 35: 193-208.
14. GRIEDER, N. C., M. DE CUEVAS and A. C. SPRADLING, 2000 The fusome organizes the microtubule network during oocyte differentiation in Drosophila. Development 127: 4253-4264.
15. HANAI, M., M. UCHIDA, S. KOBAYASHI, M. MIWA and K. UCHIDA, 1998 Genomic organization of Drosophila poly(ADP-ribose) polymerase and distribution of its mRNA during development. J. Biol. Chem. 273: 11881-11886.
16. HANAI, S., M. KANAI, M. OHASHI, M. OKAMOTO, M. YAMADA et al., 2004 Loss of poly(ADP-ribose) glycohydrolase causes progressive neurodegeneration in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 101: 82-86.
17. JU, B.-J., S. SOLUM, E. J. SONG, K.-J. LEE, K. W. ROSE et al., 2004 Activating the PARP-1 sensor component of the Groucho/ TLE1 corepressor complex mediates a CaMKinase II-dependent neurogenic gene activation pathway. Cell 119: 815-829.
18. KARPEN, G., and A. C. SPRADLING, 1992 Analysis of subtelomeric heterochromatin in the Drosophila minichromosome Dp1187 by single P element insertional mutagenesis. Genetics 132: 737-753.
19. KAWAMITSU, H., H.-O. HOSHINO, H. OKADA, M. MIWA, H. MOMOI et al., 1984 Monoclonal antibodies to poly(adenosine diphosphate ribose) recognize different structures. Biochemistry 23: 3771-3777.
20. +-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell 119: 803-814.
21. LANDRY, J., A. SUTTON, S. T. TAFROV, R. C. HELLER, J. STEBBINS et al., 2000 The silencing protein SIR2 and its homologs are NAD-dependent protein deacetylases. Proc. Natl. Acad. Sci. USA 97: 5807-5811.
22. LISZT, G., E. FORD, M. KURTEV and L. GUARENTE, 2005 Mouse Sir2 homolog SIRT6 is a nuclear ADP-ribosyltransferase. J. Biol. Chem. 280: 21313-21320.
23. MANSEAU, L., A. BARADARAN, D. BROWER, A. BUDHU, F. ELEFANT et al., 1997 GAL4 enhancer traps expressed in the embryo, larval brain, imaginal discs, and ovary of Drosophila. Dev. Dyn. 209: 310-322.
24. NEWMAN, B. L., J. R. LUNDBLAD, Y. CHEN and S. M. SMOLIK, 2002 A Drosophila homologue of Sir2 modifies position-effect variegation but does not affect life span. Genetics 162: 1675-1685.
25. ORLANDO, V., 2003 Polycomb, epigenomes, and control of cell identity. Cell 112: 599-606.
26. PROKHOROVA, A. V., M. A. VOLOSHINA, N. G. SHOSTAK, V. E. BARSKII and M. D. GOLUBOVSKII, 1994 Preparation and primary genetic analysis of Drosophila melanogaster transformants line w′lz(b)/XXywf, containing mini-white genes, integrated in the genome during P-element-dependent transformation. Genetika 30: 874-878.
27. ROSENBERG, M. I., and S. M. PARKHURST, 2002 Drosophila Sir2 is required for heterochromatic silencing and by euchromatic Hairy/E(Spl) bHLH repressors in segmentation and sex determination. Cell 109: 447-458.
28. SPRADLING, A. C., and G. M. RUBIN, 1982 Transposition of cloned P elements into Drosophila germ line chromosomes. Science 218: 341-347.
29. STAPLETON, W., S. DAS and B. D. MCKEE, 2001 A role of the Drosophila homeless gene in repression of Stellate in male meiosis. Chromosoma 110: 228-240.
30. TULIN, A., and A. SPRADLING, 2003 Chromatin loosening by poly (ADP-ribose) polymerase (PARP) at Drosophila puff loci. Science 299: 560-562.
31. TULIN, A., D. STEWART and A. C. SPRADLING, 2002 The Drosophila heterochromatic gene encoding poly(ADP-ribose) polymerase (PARP) is required to modulate chromatin structure during development. Genes Dev. 16: 2108-2119.
32. TULIN, A., Y. CHINENOV and A. C. SPRADLING, 2003 Regulation of chromatin structure and gene activity by poly(ADP-ribose) polymerases. Curr. Top. Dev. Biol. 56: 55-83.
33. ZHANG, J., 2003 Are poly(ADP-ribosylation) by PARP-1 and deacetylation by Sir2 linked? BioEssays 25: 808-814.
34. ZHANG, P., and A. C. SPRADLING, 1994 Insertional mutagenesis of Drosophila heterochromatin with single P elements. Proc. Natl. Acad. Sci. USA 91: 3539-3543.
35. ZIEGLER, M., and S. L. OEI, 2001 A cellular survival switch: poly (ADP-ribosyl)ation stimulates DNA repair and silences transcription. BioEssays 23: 543-548.