메뉴 건너뛰기




Volumn 27, Issue 21, 2007, Pages 7475-7485

The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; HISTONE; NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE 1;

EID: 35648955118     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.01314-07     Document Type: Article
Times cited : (125)

References (38)
  • 2
    • 0001732595 scopus 로고
    • Biochemical reconstitution of chromatin with physiological nucleosome spacing
    • Bulger, M., and J. T. Kadonaga. 1994. Biochemical reconstitution of chromatin with physiological nucleosome spacing. Methods Mol. Genet. 5:241-262.
    • (1994) Methods Mol. Genet , vol.5 , pp. 241-262
    • Bulger, M.1    Kadonaga, J.T.2
  • 3
    • 0003854118 scopus 로고    scopus 로고
    • Visualization and analysis of chromatin by scanning force microscopy
    • Bustamante, C., G. Zuccheri, S. H. Leuba, G. Yang, and B. Samori. 1997. Visualization and analysis of chromatin by scanning force microscopy. Methods 12:73-83.
    • (1997) Methods , vol.12 , pp. 73-83
    • Bustamante, C.1    Zuccheri, G.2    Leuba, S.H.3    Yang, G.4    Samori, B.5
  • 4
    • 0036208731 scopus 로고    scopus 로고
    • Histone H1 represses estrogen receptor alpha transcriptional activity by selectively inhibiting receptor-mediated transcription initiation
    • Cheung, E., A. S. Zarityan, and W. L. Kraus. 2002. Histone H1 represses estrogen receptor alpha transcriptional activity by selectively inhibiting receptor-mediated transcription initiation. Mol. Cell. Biol. 22:2463-2471.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 2463-2471
    • Cheung, E.1    Zarityan, A.S.2    Kraus, W.L.3
  • 5
    • 0033198919 scopus 로고    scopus 로고
    • Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions
    • D'Amours, D., S. Desnoyers, I. D'Silva, and G. Poirier. 1999. Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions. Biochem. J. 342:249-268.
    • (1999) Biochem. J , vol.342 , pp. 249-268
    • D'Amours, D.1    Desnoyers, S.2    D'Silva, I.3    Poirier, G.4
  • 6
    • 33644618035 scopus 로고    scopus 로고
    • Gene regulation and large-scale chromatin organization in the nucleus
    • Dillon, N. 2006. Gene regulation and large-scale chromatin organization in the nucleus. Chromosome Res. 14:117-126.
    • (2006) Chromosome Res , vol.14 , pp. 117-126
    • Dillon, N.1
  • 7
    • 9444244427 scopus 로고    scopus 로고
    • Chromatin compaction by a polycomb group protein complex
    • Francis, N. J., R. E. Kingston, and C. L. Woodcock. 2004. Chromatin compaction by a polycomb group protein complex. Science 306:1574-1577.
    • (2004) Science , vol.306 , pp. 1574-1577
    • Francis, N.J.1    Kingston, R.E.2    Woodcock, C.L.3
  • 8
    • 0348166012 scopus 로고    scopus 로고
    • Chromatin assembly in vitro with purified recombinant ACF and NAP-1
    • Fyodorov, D. V., and J. T. Kadonaga. 2003. Chromatin assembly in vitro with purified recombinant ACF and NAP-1. Methods Enzymol. 371:499-515.
    • (2003) Methods Enzymol , vol.371 , pp. 499-515
    • Fyodorov, D.V.1    Kadonaga, J.T.2
  • 9
    • 0034881775 scopus 로고    scopus 로고
    • Linker histone function in chromatin: Dual mechanisms of action
    • Georgel, P. T., and J. C. Hansen. 2001. Linker histone function in chromatin: dual mechanisms of action. Biochem. Cell Biol. 79:313-316.
    • (2001) Biochem. Cell Biol , vol.79 , pp. 313-316
    • Georgel, P.T.1    Hansen, J.C.2
  • 10
    • 6344287454 scopus 로고    scopus 로고
    • Interactions between BRCT repeats and phosphoproteins: Tangled up in two
    • Glover, J. N., R. S. Williams, and M. S. Lee. 2004. Interactions between BRCT repeats and phosphoproteins: tangled up in two. Trends Biochem. Sci. 29:579-585.
    • (2004) Trends Biochem. Sci , vol.29 , pp. 579-585
    • Glover, J.N.1    Williams, R.S.2    Lee, M.S.3
  • 11
    • 0037072601 scopus 로고    scopus 로고
    • Molecular biology. Chromatin higher order folding - wrapping up transcription
    • Horn, P. J., and C. L. Peterson. 2002. Molecular biology. Chromatin higher order folding - wrapping up transcription. Science 297:1824-1827.
    • (2002) Science , vol.297 , pp. 1824-1827
    • Horn, P.J.1    Peterson, C.L.2
  • 12
    • 11844299709 scopus 로고    scopus 로고
    • A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone
    • Huynh, V. A., P. J. Robinson, and D. Rhodes. 2005. A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone. J. Mol. Biol. 345:957-968.
    • (2005) J. Mol. Biol , vol.345 , pp. 957-968
    • Huynh, V.A.1    Robinson, P.J.2    Rhodes, D.3
  • 13
    • 0033564199 scopus 로고    scopus 로고
    • ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly
    • Ito, T., M. E. Levenstein, D. V. Fyodorov, A. K. Kutach, R. Kobayashi, and J. T. Kadonaga. 1999. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly. Genes Dev. 13:1529-1539.
    • (1999) Genes Dev , vol.13 , pp. 1529-1539
    • Ito, T.1    Levenstein, M.E.2    Fyodorov, D.V.3    Kutach, A.K.4    Kobayashi, R.5    Kadonaga, J.T.6
  • 14
    • 0027275194 scopus 로고
    • Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly
    • Kamakaka, R. T., M. Bulger, and J. T. Kadonaga. 1993. Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly. Genes Dev. 7:1779-1795.
    • (1993) Genes Dev , vol.7 , pp. 1779-1795
    • Kamakaka, R.T.1    Bulger, M.2    Kadonaga, J.T.3
  • 15
    • 10944227347 scopus 로고    scopus 로고
    • +-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1
    • +-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1. Cell 119:803-814.
    • (2004) Cell , vol.119 , pp. 803-814
    • Kim, M.Y.1    Mauro, S.2    Gevry, N.3    Lis, J.4    Kraus, W.L.5
  • 16
    • 24344454692 scopus 로고    scopus 로고
    • Poly(ADP-ribosyl) ation by PARP-I: 'PAR-laying' NAD+ into a nuclear signal
    • Kim, M. Y., T. Zhang, and W. L. Kraus. 2005. Poly(ADP-ribosyl) ation by PARP-I: 'PAR-laying' NAD+ into a nuclear signal. Genes Dev. 19:1951-1967.
    • (2005) Genes Dev , vol.19 , pp. 1951-1967
    • Kim, M.Y.1    Zhang, T.2    Kraus, W.L.3
  • 17
    • 0000901898 scopus 로고    scopus 로고
    • Ligand- and cofactor-regulated transcription with chromatin templates
    • D. Picard ed, Oxford University Press, Oxford, United Kingdom
    • Kraus, W. L., and J. T. Kadonaga. 1999. Ligand- and cofactor-regulated transcription with chromatin templates, p. 167-189. In D. Picard (ed.), Steroid/nuclear receptor superfamily: a practical approach. Oxford University Press, Oxford, United Kingdom.
    • (1999) Steroid/nuclear receptor superfamily: A practical approach , pp. 167-189
    • Kraus, W.L.1    Kadonaga, J.T.2
  • 18
    • 0032006563 scopus 로고    scopus 로고
    • p300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation
    • Kraus, W. L., and J. T. Kadonaga. 1998. p300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation. Genes Dev. 12:331-342.
    • (1998) Genes Dev , vol.12 , pp. 331-342
    • Kraus, W.L.1    Kadonaga, J.T.2
  • 19
    • 0038682011 scopus 로고    scopus 로고
    • PARP goes transcription
    • Kraus, W. L., and J. Lis. 2003. PARP goes transcription. Cell 113:677-683.
    • (2003) Cell , vol.113 , pp. 677-683
    • Kraus, W.L.1    Lis, J.2
  • 20
    • 0026095663 scopus 로고
    • Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II
    • Laybourn, P. J., and J. T. Kadonaga. 1991. Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II. Science 254:238-245.
    • (1991) Science , vol.254 , pp. 238-245
    • Laybourn, P.J.1    Kadonaga, J.T.2
  • 22
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • Luger, K., A. W. Mader, R. K. Richmond, D. F. Sargent, and T. J. Richmond. 1997. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 24
    • 0346500490 scopus 로고    scopus 로고
    • The 40 kDa carboxy-terminal domain of poly(ADP-ribose) polymerase-1 forms catalytically competent homo- and heterodimers in the absence of DNA
    • Mendoza-Alvarez, H., and R. Alvarez-Gonzalez. 2004. The 40 kDa carboxy-terminal domain of poly(ADP-ribose) polymerase-1 forms catalytically competent homo- and heterodimers in the absence of DNA. J. Mol. Biol. 336:105-114.
    • (2004) J. Mol. Biol , vol.336 , pp. 105-114
    • Mendoza-Alvarez, H.1    Alvarez-Gonzalez, R.2
  • 25
    • 0037154963 scopus 로고    scopus 로고
    • Cooperation between complexes that regulate chromatin structure and transcription
    • Narlikar, G. J., H. Y. Fan, and R. E. Kingston. 2002. Cooperation between complexes that regulate chromatin structure and transcription. Cell 108:475-487.
    • (2002) Cell , vol.108 , pp. 475-487
    • Narlikar, G.J.1    Fan, H.Y.2    Kingston, R.E.3
  • 26
    • 0028130301 scopus 로고
    • Linker histones H1 and H5 prevent the mobility of positioned nucleosomes
    • Pennings, S., G. Meersseman, and E. M. Bradbury. 1994. Linker histones H1 and H5 prevent the mobility of positioned nucleosomes. Proc. Natl. Acad. Sci. USA 91:10275-10279.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10275-10279
    • Pennings, S.1    Meersseman, G.2    Bradbury, E.M.3
  • 27
    • 0033082238 scopus 로고    scopus 로고
    • Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits
    • Phelan, M. L., S. Sif, G. J. Narlikar, and R. E. Kingston. 1999. Reconstitution of a core chromatin remodeling complex from SWI/SNF subunits. Mol. Cell 3:247-253.
    • (1999) Mol. Cell , vol.3 , pp. 247-253
    • Phelan, M.L.1    Sif, S.2    Narlikar, G.J.3    Kingston, R.E.4
  • 28
    • 33744831161 scopus 로고    scopus 로고
    • Structure of the '30 nm' chromatin fibre: A key role for the linker histone
    • Robinson, P. J., and D. Rhodes. 2006. Structure of the '30 nm' chromatin fibre: a key role for the linker histone. Curr. Opin. Struct. Biol. 16:336-343.
    • (2006) Curr. Opin. Struct. Biol , vol.16 , pp. 336-343
    • Robinson, P.J.1    Rhodes, D.2
  • 31
    • 0037151051 scopus 로고    scopus 로고
    • Poly(ADP-ribose) polymerase-2 (PARP-2) is required for efficient base excision DNA repair in association with PARP-1 and XRCC1
    • Schreiber, V., J. C. Ame, P. Dolle, I. Schultz, B. Rinaldi, V. Fraulob, J. Menissier-de Murcia, and G. de Murcia. 2002. Poly(ADP-ribose) polymerase-2 (PARP-2) is required for efficient base excision DNA repair in association with PARP-1 and XRCC1. J. Biol. Chem. 277:23028-23036.
    • (2002) J. Biol. Chem , vol.277 , pp. 23028-23036
    • Schreiber, V.1    Ame, J.C.2    Dolle, P.3    Schultz, I.4    Rinaldi, B.5    Fraulob, V.6    Menissier-de Murcia, J.7    de Murcia, G.8
  • 32
    • 0018266771 scopus 로고
    • Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones
    • Simpson, R. T. 1978. Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones. Biochemistry 17:5524-5531.
    • (1978) Biochemistry , vol.17 , pp. 5524-5531
    • Simpson, R.T.1
  • 33
    • 1542328272 scopus 로고    scopus 로고
    • The RNA polymerase II transcription cycle: Cycling through chromatin
    • Svejstrup, J. Q. 2004. The RNA polymerase II transcription cycle: cycling through chromatin. Biochim. Biophys. Acta 1677:64-73.
    • (2004) Biochim. Biophys. Acta , vol.1677 , pp. 64-73
    • Svejstrup, J.Q.1
  • 34
    • 0018581187 scopus 로고
    • Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin
    • Thoma, F., T. Koller, and A. Klug. 1979. Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J. Cell Biol. 83:403-427.
    • (1979) J. Cell Biol , vol.83 , pp. 403-427
    • Thoma, F.1    Koller, T.2    Klug, A.3
  • 35
    • 0029004739 scopus 로고
    • Energy-dependent chromatin accessibility and nucleosome mobility in a cell-free system
    • Varga-Weisz, P. D., T. A. Blank, and P. B. Becker. 1995. Energy-dependent chromatin accessibility and nucleosome mobility in a cell-free system. EMBO J. 14:2209-2216.
    • (1995) EMBO J , vol.14 , pp. 2209-2216
    • Varga-Weisz, P.D.1    Blank, T.A.2    Becker, P.B.3
  • 36
    • 0031790607 scopus 로고    scopus 로고
    • Location and function of linker histones
    • Vignali, M., and J. L. Workman. 1998. Location and function of linker histones. Nat. Struct. Biol. 5:1025-1028.
    • (1998) Nat. Struct. Biol , vol.5 , pp. 1025-1028
    • Vignali, M.1    Workman, J.L.2
  • 38
    • 29244467484 scopus 로고    scopus 로고
    • Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length
    • Woodcock, C. L., A. I. Skoultchi, and Y. Fan. 2006. Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length. Chromosome Res. 14:17-25.
    • (2006) Chromosome Res , vol.14 , pp. 17-25
    • Woodcock, C.L.1    Skoultchi, A.I.2    Fan, Y.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.