-
1
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
Basehoar AD, Zanton SJ, Pugh BF (2004) Identification and distinct regulation of yeast TATA box-containing genes. Cell 116: 699-709
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
2
-
-
0032579440
-
-
Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, Boeke JD (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115-132
-
Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, Boeke JD (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115-132
-
-
-
-
3
-
-
33751528593
-
A chromatin-mediated mechanism for specification of conditional transcription factor targets
-
Buck MJ, Lieb JD (2006) A chromatin-mediated mechanism for specification of conditional transcription factor targets. Nat Genet 38: 1446-1451
-
(2006)
Nat Genet
, vol.38
, pp. 1446-1451
-
-
Buck, M.J.1
Lieb, J.D.2
-
4
-
-
2142821382
-
Distinct DNA elements contribute to Rap1p affinity for its binding sites
-
Del Vescovo V, De Sanctis V, Bianchi A, Shore D, Di Mauro E, Negri R (2004) Distinct DNA elements contribute to Rap1p affinity for its binding sites. J Mol Biol 338: 877-893
-
(2004)
J Mol Biol
, vol.338
, pp. 877-893
-
-
Del Vescovo, V.1
De Sanctis, V.2
Bianchi, A.3
Shore, D.4
Di Mauro, E.5
Negri, R.6
-
5
-
-
0032710459
-
The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo
-
Dudley AM, Rougeulle C, Winston F (1999) The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo. Genes Dev 13: 2940-2945
-
(1999)
Genes Dev
, vol.13
, pp. 2940-2945
-
-
Dudley, A.M.1
Rougeulle, C.2
Winston, F.3
-
6
-
-
0024408667
-
Identification of the DNA damage-responsive element of RNR2 and evidence that four distinct cellular factors bind it
-
Elledge SJ, Davis RW (1989) Identification of the DNA damage-responsive element of RNR2 and evidence that four distinct cellular factors bind it. Mol Cell Biol 9: 5373-5386
-
(1989)
Mol Cell Biol
, vol.9
, pp. 5373-5386
-
-
Elledge, S.J.1
Davis, R.W.2
-
7
-
-
33845783756
-
Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction
-
Garbett KA, Tripathi MK, Cencki B, Layer JH, Weil PA (2007) Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction. Mol Cell Biol 27: 297-311
-
(2007)
Mol Cell Biol
, vol.27
, pp. 297-311
-
-
Garbett, K.A.1
Tripathi, M.K.2
Cencki, B.3
Layer, J.H.4
Weil, P.A.5
-
8
-
-
0033964073
-
TBP-associated factors (TAFIIs): Multiple, selective transcriptional mediators in common complexes
-
Green MR (2000) TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes. Trends Biochem Sci 25: 59-63
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 59-63
-
-
Green, M.R.1
-
9
-
-
0030990291
-
Molecular model for telomeric heterochromatin in yeast
-
Grunstein M (1997) Molecular model for telomeric heterochromatin in yeast. Curr Opin Cell Biol 9: 383-387
-
(1997)
Curr Opin Cell Biol
, vol.9
, pp. 383-387
-
-
Grunstein, M.1
-
10
-
-
18144368519
-
TAF1 histone acetyltransferase activity in Sp1 activation of the cyclin D1 promoter
-
Hilton TL, Li Y, Dunphy EL, Wang EH (2005) TAF1 histone acetyltransferase activity in Sp1 activation of the cyclin D1 promoter. Mol Cell Biol 25: 4321-4332
-
(2005)
Mol Cell Biol
, vol.25
, pp. 4321-4332
-
-
Hilton, T.L.1
Li, Y.2
Dunphy, E.L.3
Wang, E.H.4
-
11
-
-
0032483576
-
The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor
-
Huang M, Zhou Z, Elledge SJ (1998) The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor. Cell 94: 595-605
-
(1998)
Cell
, vol.94
, pp. 595-605
-
-
Huang, M.1
Zhou, Z.2
Elledge, S.J.3
-
12
-
-
1542285166
-
A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae
-
Huisinga KL, Pugh BF (2004) A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol Cell 13: 573-585
-
(2004)
Mol Cell
, vol.13
, pp. 573-585
-
-
Huisinga, K.L.1
Pugh, B.F.2
-
13
-
-
0024345430
-
Upstream regulatory sequences of the yeast RNR2 gene include a repression sequence and an activation site that binds the RAP1 protein
-
Hurd HK, Roberts JW (1989) Upstream regulatory sequences of the yeast RNR2 gene include a repression sequence and an activation site that binds the RAP1 protein. Mol Cell Biol 9: 5359-5372
-
(1989)
Mol Cell Biol
, vol.9
, pp. 5359-5372
-
-
Hurd, H.K.1
Roberts, J.W.2
-
14
-
-
33749153628
-
Nucleosome positions predicted through comparative genomics
-
Ioshikhes IP, Albert I, Zanton SJ, Pugh BF (2006) Nucleosome positions predicted through comparative genomics. Nat Genet 38: 1210-1215
-
(2006)
Nat Genet
, vol.38
, pp. 1210-1215
-
-
Ioshikhes, I.P.1
Albert, I.2
Zanton, S.J.3
Pugh, B.F.4
-
15
-
-
0034307314
-
Functional selectivity of recombinant mammalian SWI/SNF subunits
-
Kadam S, McAlpine GS, Phelan ML, Kingston RE, Jones KA, Emerson BM (2000) Functional selectivity of recombinant mammalian SWI/SNF subunits. Genes Dev 14: 2441-2451
-
(2000)
Genes Dev
, vol.14
, pp. 2441-2451
-
-
Kadam, S.1
McAlpine, G.S.2
Phelan, M.L.3
Kingston, R.E.4
Jones, K.A.5
Emerson, B.M.6
-
16
-
-
40249089993
-
Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II
-
Kasahara K, Ki S, Aoyama K, Takahashi H, Kokubo T (2008) Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II. Nucleic Acids Res 36: 1343-1357
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1343-1357
-
-
Kasahara, K.1
Ki, S.2
Aoyama, K.3
Takahashi, H.4
Kokubo, T.5
-
17
-
-
0025809264
-
RAP1 protein activates and silences transcription of mating-type genes in yeast
-
Kurtz S, Shore D (1991) RAP1 protein activates and silences transcription of mating-type genes in yeast. Genes Dev 5: 616-628
-
(1991)
Genes Dev
, vol.5
, pp. 616-628
-
-
Kurtz, S.1
Shore, D.2
-
18
-
-
0001262663
-
Redundant roles for the TFIID and SAGA complexes in global transcription
-
Lee TI, Causton HC, Holstege FC, Shen WC, Hannett N, Jennings EG, Winston F, Green MR, Young RA (2000) Redundant roles for the TFIID and SAGA complexes in global transcription. Nature 405: 701-704
-
(2000)
Nature
, vol.405
, pp. 701-704
-
-
Lee, T.I.1
Causton, H.C.2
Holstege, F.C.3
Shen, W.C.4
Hannett, N.5
Jennings, E.G.6
Winston, F.7
Green, M.R.8
Young, R.A.9
-
19
-
-
0342757661
-
Derepression of DNA damage-regulated genes requires yeast TAF(II)s
-
Li B, Reese JC (2000) Derepression of DNA damage-regulated genes requires yeast TAF(II)s. EMBO J 19: 4091-4100
-
(2000)
EMBO J
, vol.19
, pp. 4091-4100
-
-
Li, B.1
Reese, J.C.2
-
20
-
-
0035823553
-
Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence
-
Li B, Reese JC (2001) Ssn6-Tup1 regulates RNR3 by positioning nucleosomes and affecting the chromatin structure at the upstream repression sequence. J Biol Chem 276: 33788-33797
-
(2001)
J Biol Chem
, vol.276
, pp. 33788-33797
-
-
Li, B.1
Reese, J.C.2
-
21
-
-
0037162292
-
Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure
-
Li XY, Bhaumik SR, Zhu X, Li L, Shen WC, Dixit BL, Green MR (2002) Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure. Curr Biol 12: 1240-1244
-
(2002)
Curr Biol
, vol.12
, pp. 1240-1244
-
-
Li, X.Y.1
Bhaumik, S.R.2
Zhu, X.3
Li, L.4
Shen, W.C.5
Dixit, B.L.6
Green, M.R.7
-
22
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
Lieb JD, Liu X, Botstein D, Brown PO (2001) Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat Genet 28: 327-334
-
(2001)
Nat Genet
, vol.28
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
23
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
-
Longtine MS, McKenzie A, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pringle JR (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961
-
(1998)
Yeast
, vol.14
, pp. 953-961
-
-
Longtine, M.S.1
McKenzie, A.2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
Brachat, A.6
Philippsen, P.7
Pringle, J.R.8
-
24
-
-
0033612287
-
Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast
-
Martin SG, Laroche T, Suka N, Grunstein M, Gasser SM (1999) Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast. Cell 97: 621-633
-
(1999)
Cell
, vol.97
, pp. 621-633
-
-
Martin, S.G.1
Laroche, T.2
Suka, N.3
Grunstein, M.4
Gasser, S.M.5
-
25
-
-
0033539095
-
DNA damage triggers disruption of telomeric silencing and Mec1p-dependent relocation of Sir3p
-
McAinsh AD, Scott-Drew S, Murray JA, Jackson SP (1999) DNA damage triggers disruption of telomeric silencing and Mec1p-dependent relocation of Sir3p. Curr Biol 9: 963-966
-
(1999)
Curr Biol
, vol.9
, pp. 963-966
-
-
McAinsh, A.D.1
Scott-Drew, S.2
Murray, J.A.3
Jackson, S.P.4
-
26
-
-
0036239962
-
Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast
-
Mencia M, Moqtaderi Z, Geisberg JV, Kuras L, Struh K (2002) Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast. Mol Cell 9: 823-833
-
(2002)
Mol Cell
, vol.9
, pp. 823-833
-
-
Mencia, M.1
Moqtaderi, Z.2
Geisberg, J.V.3
Kuras, L.4
Struh, K.5
-
27
-
-
0033612189
-
MEC1-dependent redistribution of the Sir3 silencing protein from telomeres to DNA double-strand breaks
-
Mills KD, Sinclair DA, Guarente L (1999) MEC1-dependent redistribution of the Sir3 silencing protein from telomeres to DNA double-strand breaks. Cell 97: 609-620
-
(1999)
Cell
, vol.97
, pp. 609-620
-
-
Mills, K.D.1
Sinclair, D.A.2
Guarente, L.3
-
28
-
-
0028004378
-
Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1
-
Moretti P, Freeman K, Coodly L, Shore D (1994) Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1. Genes Dev 8: 2257-2269
-
(1994)
Genes Dev
, vol.8
, pp. 2257-2269
-
-
Moretti, P.1
Freeman, K.2
Coodly, L.3
Shore, D.4
-
29
-
-
0033981095
-
RAP, RAP, open up! New wrinkles for RAP1 in yeast
-
Morse RH (2000) RAP, RAP, open up! New wrinkles for RAP1 in yeast. Trends Genet 16: 51-53
-
(2000)
Trends Genet
, vol.16
, pp. 51-53
-
-
Morse, R.H.1
-
30
-
-
28544441180
-
DNA damage and replication stress induced transcription of RNR genes is dependent on the Ccr4-Not complex
-
Mulder KW, Winkler GS, Timmers HT (2005) DNA damage and replication stress induced transcription of RNR genes is dependent on the Ccr4-Not complex. Nucleic Acids Res 33: 6384-6392
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6384-6392
-
-
Mulder, K.W.1
Winkler, G.S.2
Timmers, H.T.3
-
31
-
-
0035691979
-
Generation and interconversion of multiple distinct nucleosomal states as a mechanism for catalyzing chromatin fluidity
-
Narlikar GJ, Phelan ML, Kingston RE (2001) Generation and interconversion of multiple distinct nucleosomal states as a mechanism for catalyzing chromatin fluidity. Mol Cell 8: 1219-1230
-
(2001)
Mol Cell
, vol.8
, pp. 1219-1230
-
-
Narlikar, G.J.1
Phelan, M.L.2
Kingston, R.E.3
-
32
-
-
33846970933
-
DNA breaks are masked by multiple Rap1 binding in yeast: Implications for telomere capping and telomerase regulation
-
Negrini S, Ribaud V, Bianchi A, Shore D (2007) DNA breaks are masked by multiple Rap1 binding in yeast: implications for telomere capping and telomerase regulation. Genes Dev 21: 292-302
-
(2007)
Genes Dev
, vol.21
, pp. 292-302
-
-
Negrini, S.1
Ribaud, V.2
Bianchi, A.3
Shore, D.4
-
34
-
-
0028169339
-
Yeast TAFIIS in a multisubunit complex required for activated transcription
-
Reese JC, Apone L, Walker SS, Griffin LA, Green MR (1994) Yeast TAFIIS in a multisubunit complex required for activated transcription. Nature 371: 523-527
-
(1994)
Nature
, vol.371
, pp. 523-527
-
-
Reese, J.C.1
Apone, L.2
Walker, S.S.3
Griffin, L.A.4
Green, M.R.5
-
35
-
-
0348011831
-
Functional analysis of TFIID components using conditional mutants
-
Reese JC, Green MR (2003) Functional analysis of TFIID components using conditional mutants. Methods Enzymol 370: 415-430
-
(2003)
Methods Enzymol
, vol.370
, pp. 415-430
-
-
Reese, J.C.1
Green, M.R.2
-
36
-
-
0035830960
-
Specific interactions of the telomeric protein Rap1p with nucleosomal binding sites
-
Rossetti L, Cacchione S, De Menna A, Chapman L, Rhodes D, Savino M (2001) Specific interactions of the telomeric protein Rap1p with nucleosomal binding sites. J Mol Biol 306: 903-913
-
(2001)
J Mol Biol
, vol.306
, pp. 903-913
-
-
Rossetti, L.1
Cacchione, S.2
De Menna, A.3
Chapman, L.4
Rhodes, D.5
Savino, M.6
-
37
-
-
0036269973
-
Proteomics of the eukaryotic transcription machinery: Identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry
-
Sanders SL, Jennings J, Canutescu A, Link AJ, Weil PA (2002) Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol Cell Biol 22: 4723-4738
-
(2002)
Mol Cell Biol
, vol.22
, pp. 4723-4738
-
-
Sanders, S.L.1
Jennings, J.2
Canutescu, A.3
Link, A.J.4
Weil, P.A.5
-
38
-
-
0037442819
-
SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery
-
Sharma VM, Li B, Reese JC (2003) SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery. Genes Dev 17: 502-515
-
(2003)
Genes Dev
, vol.17
, pp. 502-515
-
-
Sharma, V.M.1
Li, B.2
Reese, J.C.3
-
39
-
-
0035313820
-
Telomeric chromatin: Replicating and wrapping up chromosome ends
-
Shore D (2001) Telomeric chromatin: replicating and wrapping up chromosome ends. Curr Opin Genet Dev 11: 189-198
-
(2001)
Curr Opin Genet Dev
, vol.11
, pp. 189-198
-
-
Shore, D.1
-
40
-
-
0037315185
-
Structural analysis of the yeast SWI/SNF chromatin remodeling complex
-
Smith CL, Horowitz-Scherer R, Flanagan JF, Woodcock CL, Peterson CL (2003) Structural analysis of the yeast SWI/SNF chromatin remodeling complex. Nat Struct Biol 10: 141-145
-
(2003)
Nat Struct Biol
, vol.10
, pp. 141-145
-
-
Smith, C.L.1
Horowitz-Scherer, R.2
Flanagan, J.F.3
Woodcock, C.L.4
Peterson, C.L.5
-
41
-
-
0032911635
-
Functional organization of the yeast SAGA complex: Distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction
-
Sterner DE, Grant PA, Roberts SM, Duggan LJ, Belotserkovskaya R, Pacella LA, Winston F, Workman JL, Berger SL (1999) Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction. Mol Cell Biol 19: 86-98
-
(1999)
Mol Cell Biol
, vol.19
, pp. 86-98
-
-
Sterner, D.E.1
Grant, P.A.2
Roberts, S.M.3
Duggan, L.J.4
Belotserkovskaya, R.5
Pacella, L.A.6
Winston, F.7
Workman, J.L.8
Berger, S.L.9
-
42
-
-
0030964526
-
Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae
-
Tsukamoto Y, Kato J, Ikeda H (1997) Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae. Nature 388: 900-903
-
(1997)
Nature
, vol.388
, pp. 900-903
-
-
Tsukamoto, Y.1
Kato, J.2
Ikeda, H.3
-
43
-
-
0027096119
-
Nucleosome core displacement in vitro via a metastable transcription factor-nucleosome complex
-
Workman JL, Kingston RE (1992) Nucleosome core displacement in vitro via a metastable transcription factor-nucleosome complex. Science 258: 1780-1784
-
(1992)
Science
, vol.258
, pp. 1780-1784
-
-
Workman, J.L.1
Kingston, R.E.2
-
44
-
-
0027048595
-
Roles of SWI1, SWI2, and SWI3 proteins for transcriptional enhancement by steroid receptors
-
Yoshinaga SK, Peterson CL, Herskowitz I, Yamamoto KR (1992) Roles of SWI1, SWI2, and SWI3 proteins for transcriptional enhancement by steroid receptors. Science 258: 1598-1604
-
(1992)
Science
, vol.258
, pp. 1598-1604
-
-
Yoshinaga, S.K.1
Peterson, C.L.2
Herskowitz, I.3
Yamamoto, K.R.4
-
45
-
-
0035980096
-
The N-terminal and C-terminal domains of RAP1 are dispensable for chromatin opening and GCN4-mediated HIS4 activation in budding yeast
-
Yu L, Sabet N, Chambers A, Morse RH (2001) The N-terminal and C-terminal domains of RAP1 are dispensable for chromatin opening and GCN4-mediated HIS4 activation in budding yeast. J Biol Chem 276: 33257-33264
-
(2001)
J Biol Chem
, vol.276
, pp. 33257-33264
-
-
Yu, L.1
Sabet, N.2
Chambers, A.3
Morse, R.H.4
-
46
-
-
34547404832
-
Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3
-
Zhang H, Reese JC (2007) Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3. Proc Natl Acad Sci USA 104: 8833-8838
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8833-8838
-
-
Zhang, H.1
Reese, J.C.2
-
47
-
-
33644791356
-
Isolation of yeast nuclei and micrococcal nuclease mapping of nucleosome positioning
-
Zhang Z, Li B, Reese JC (2006) Isolation of yeast nuclei and micrococcal nuclease mapping of nucleosome positioning. Methods Mol Biol 313: 245-256
-
(2006)
Methods Mol Biol
, vol.313
, pp. 245-256
-
-
Zhang, Z.1
Li, B.2
Reese, J.C.3
-
48
-
-
4544308621
-
Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae
-
Zhang Z, Reese JC (2004a) Redundant mechanisms are used by Ssn6-Tup1 in repressing chromosomal gene transcription in Saccharomyces cerevisiae. J Biol Chem 279: 39240-39250
-
(2004)
J Biol Chem
, vol.279
, pp. 39240-39250
-
-
Zhang, Z.1
Reese, J.C.2
-
49
-
-
3042551856
-
Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae
-
Zhang Z, Reese JC (2004b) Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae. EMBO J 23: 2246-2257
-
(2004)
EMBO J
, vol.23
, pp. 2246-2257
-
-
Zhang, Z.1
Reese, J.C.2
-
50
-
-
23844531920
-
Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism
-
Zhang Z, Reese JC (2005) Molecular genetic analysis of the yeast repressor Rfx1/Crt1 reveals a novel two-step regulatory mechanism. Mol Cell Biol 25: 7399-7411
-
(2005)
Mol Cell Biol
, vol.25
, pp. 7399-7411
-
-
Zhang, Z.1
Reese, J.C.2
|