메뉴 건너뛰기




Volumn 38, Issue 12, 2006, Pages 1446-1451

A chromatin-mediated mechanism for specification of conditional transcription factor targets

Author keywords

[No Author keywords available]

Indexed keywords

GLUCOSE; PROTEIN; PROTEIN TUP1; RAP1 PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 33751528593     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng1917     Document Type: Article
Times cited : (76)

References (30)
  • 1
    • 54249116230 scopus 로고
    • Genetic regulatory mechanisms in the synthesis of proteins
    • Jacob, F. & Monod, J. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3, 318-356 (1961).
    • (1961) J. Mol. Biol. , vol.3 , pp. 318-356
    • Jacob, F.1    Monod, J.2
  • 2
    • 4544352942 scopus 로고    scopus 로고
    • Transcriptional regulatory code of a eukaryotic genome
    • Harbison, C.T. et al. Transcriptional regulatory code of a eukaryotic genome. Nature 431, 99-104 (2004).
    • (2004) Nature , vol.431 , pp. 99-104
    • Harbison, C.T.1
  • 3
    • 0030059223 scopus 로고    scopus 로고
    • Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex
    • O'Neill, E.M., Kaffman, A., Jolly, E.R. & O'Shea, E.K. Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex. Science 271, 209-212 (1996).
    • (1996) Science , vol.271 , pp. 209-212
    • O'Neill, E.M.1    Kaffman, A.2    Jolly, E.R.3    O'Shea, E.K.4
  • 4
    • 0014779269 scopus 로고
    • Mechanism of activation of catabolite-sensitive genes: A positive control system
    • Zubay, G., Schwartz, D. & Beckwith, J. Mechanism of activation of catabolite-sensitive genes: a positive control system. Proc. Natl. Acad. Sci. USA 66, 104-110 (1970).
    • (1970) Proc. Natl. Acad. Sci. USA , vol.66 , pp. 104-110
    • Zubay, G.1    Schwartz, D.2    Beckwith, J.3
  • 5
    • 0037722938 scopus 로고    scopus 로고
    • Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling
    • Zeitlinger, J. et al. Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling. Cell 113, 395-404 (2003).
    • (2003) Cell , vol.113 , pp. 395-404
    • Zeitlinger, J.1
  • 6
    • 0030797585 scopus 로고    scopus 로고
    • Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain
    • Gu, W. & Roeder, R.G. Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain. Cell 90, 595-606 (1997).
    • (1997) Cell , vol.90 , pp. 595-606
    • Gu, W.1    Roeder, R.G.2
  • 7
    • 0028130685 scopus 로고
    • RAP1: A protean regulator in yeast
    • Shore, D. RAP1: a protean regulator in yeast. Trends Genet. 10, 408-412 (1994).
    • (1994) Trends Genet. , vol.10 , pp. 408-412
    • Shore, D.1
  • 8
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb, J.D., Liu, X., Botstein, D. & Brown, P.O. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28, 327-334 (2001).
    • (2001) Nat. Genet. , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 9
    • 0033768106 scopus 로고    scopus 로고
    • Analysis of yeast protein kinases using protein chips
    • Zhu, H. et al. Analysis of yeast protein kinases using protein chips. Nat. Genet. 26, 283-289 (2000).
    • (2000) Nat. Genet. , vol.26 , pp. 283-289
    • Zhu, H.1
  • 10
    • 0034234638 scopus 로고    scopus 로고
    • Turning genes off by Ssn6-Tup1: A conserved system of transcriptional repression in eukaryotes
    • Smith, R.L. & Johnson, A.D. Turning genes off by Ssn6-Tup1: a conserved system of transcriptional repression in eukaryotes. Trends Biochem. Sci. 25, 325-330 (2000).
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 325-330
    • Smith, R.L.1    Johnson, A.D.2
  • 11
    • 0034973630 scopus 로고    scopus 로고
    • SUT1p interaction with Cyc8p(Ssn6p) relieves hypoxic genes from Cyc8p-Tup1p repression in Saccharomyces cerevisiae
    • Regnacq, M., Alimardani, P., El Moudni, B. & Berges, T. SUT1p interaction with Cyc8p(Ssn6p) relieves hypoxic genes from Cyc8p-Tup1p repression in Saccharomyces cerevisiae. Mol. Microbiol. 40, 1085-1096 (2001).
    • (2001) Mol. Microbiol. , vol.40 , pp. 1085-1096
    • Regnacq, M.1    Alimardani, P.2    El Moudni, B.3    Berges, T.4
  • 12
    • 0028340797 scopus 로고
    • Functional dissection of the yeast Cyc8-Tup1 transcriptional co-repressor complex
    • Tzamarias, D. & Struhl, K. Functional dissection of the yeast Cyc8-Tup1 transcriptional co-repressor complex. Nature 369, 758-761 (1994).
    • (1994) Nature , vol.369 , pp. 758-761
    • Tzamarias, D.1    Struhl, K.2
  • 13
    • 0032933350 scopus 로고    scopus 로고
    • Repressors and upstream repressing sequences of the stress-regulated ENA1 gene in Saccharomyces cerevisiae: bZIP protein Sko1p confers HOG-dependent osmotic regulation
    • Proft, M. & Serrano, R. Repressors and upstream repressing sequences of the stress-regulated ENA1 gene in Saccharomyces cerevisiae: bZIP protein Sko1p confers HOG-dependent osmotic regulation. Mol. Cell. Biol. 19, 537-546 (1999).
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 537-546
    • Proft, M.1    Serrano, R.2
  • 14
    • 0030883032 scopus 로고    scopus 로고
    • Regulated nuclear translocation of the Mig1 glucose repressor
    • De Vit, M.J., Waddle, J.A. & Johnston, M. Regulated nuclear translocation of the Mig1 glucose repressor. Mol. Biol. Cell 8, 1603-1618 (1997).
    • (1997) Mol. Biol. Cell , vol.8 , pp. 1603-1618
    • De Vit, M.J.1    Waddle, J.A.2    Johnston, M.3
  • 15
    • 0013329665 scopus 로고    scopus 로고
    • Nrg1 is a transcriptional repressor for glucose repression of STA1 gene expression in Saccharomyces cerevisiae
    • Park, S.H., Koh, S.S., Chun, J.H., Hwang, H.J. & Kang, H.S. Nrg1 is a transcriptional repressor for glucose repression of STA1 gene expression in Saccharomyces cerevisiae. Mol. Cell. Biol. 19, 2044-2050 (1999).
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 2044-2050
    • Park, S.H.1    Koh, S.S.2    Chun, J.H.3    Hwang, H.J.4    Kang, H.S.5
  • 16
    • 0036289351 scopus 로고    scopus 로고
    • Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress
    • Proft, M. & Struhl, K. Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress. Mol. Cell 9, 1307-1317 (2002).
    • (2002) Mol. Cell , vol.9 , pp. 1307-1317
    • Proft, M.1    Struhl, K.2
  • 17
    • 0348010365 scopus 로고    scopus 로고
    • Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo
    • Davie, J.K., Edmondson, D.G., Coco, C.B. & Dent, S.Y. Tup1-Ssn6 interacts with multiple class I histone deacetylases in vivo. J. Biol. Chem. 278, 50158-50162 (2003).
    • (2003) J. Biol. Chem. , vol.278 , pp. 50158-50162
    • Davie, J.K.1    Edmondson, D.G.2    Coco, C.B.3    Dent, S.Y.4
  • 18
    • 0034312312 scopus 로고    scopus 로고
    • Ssn6-Tup1 interacts with class I histone deacetylases required for repression
    • Watson, A.D. et al. Ssn6-Tup1 interacts with class I histone deacetylases required for repression. Genes Dev. 14, 2737-2744 (2000).
    • (2000) Genes Dev. , vol.14 , pp. 2737-2744
    • Watson, A.D.1
  • 19
    • 0035105035 scopus 로고    scopus 로고
    • TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast
    • Wu, J., Suka, N., Carlson, M. & Grunstein, M. TUP1 utilizes histone H3/H2B-specific HDA1 deacetylase to repress gene activity in yeast. Mol. Cell 7, 117-126 (2001).
    • (2001) Mol. Cell , vol.7 , pp. 117-126
    • Wu, J.1    Suka, N.2    Carlson, M.3    Grunstein, M.4
  • 20
    • 4344672753 scopus 로고    scopus 로고
    • Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae
    • Green, S.R. & Johnson, A.D. Promoter-dependent roles for the Srb10 cyclin-dependent kinase and the Hda1 deacetylase in Tup1-mediated repression in Saccharomyces cerevisiae. Mol. Biol. Cell 15, 4191-4202 (2004).
    • (2004) Mol. Biol. Cell , vol.15 , pp. 4191-4202
    • Green, S.R.1    Johnson, A.D.2
  • 21
    • 3042551856 scopus 로고    scopus 로고
    • Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae
    • Zhang, Z. & Reese, J.C. Ssn6-Tup1 requires the ISW2 complex to position nucleosomes in Saccharomyces cerevisiae. EMBO J. 23, 2246-2257 (2004).
    • (2004) EMBO J. , vol.23 , pp. 2246-2257
    • Zhang, Z.1    Reese, J.C.2
  • 22
    • 0034817393 scopus 로고    scopus 로고
    • Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression
    • Fazzio, T.G. et al. Widespread collaboration of Isw2 and Sin3-Rpd3 chromatin remodeling complexes in transcriptional repression. Mol. Cell. Biol. 21, 6450-6460 (2001).
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 6450-6460
    • Fazzio, T.G.1
  • 23
    • 9644268153 scopus 로고    scopus 로고
    • Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
    • Mukherjee, S. et al. Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays. Nat. Genet. 36, 1331-1339 (2004).
    • (2004) Nat. Genet. , vol.36 , pp. 1331-1339
    • Mukherjee, S.1
  • 24
    • 27144458417 scopus 로고    scopus 로고
    • Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide
    • Rao, B., Shibata, Y., Strahl, B.D. & Lieb, J.D. Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide. Mol. Cell. Biol. 25, 9447-9459 (2005).
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 9447-9459
    • Rao, B.1    Shibata, Y.2    Strahl, B.D.3    Lieb, J.D.4
  • 25
    • 31344436263 scopus 로고    scopus 로고
    • ChIPOTle: A user-friendly tool for the analysis of ChIPchip data
    • Buck, M., Nobel, A. & Lieb, J. ChIPOTle: a user-friendly tool for the analysis of ChIPchip data. Genome Biol. 6, R97 (2005).
    • (2005) Genome Biol. , vol.6
    • Buck, M.1    Nobel, A.2    Lieb, J.3
  • 26
    • 3543023310 scopus 로고    scopus 로고
    • Evidence for nucleosome depletion at active regulatory regions genome-wide
    • Lee, C.K., Shibata, Y., Rao, B., Strahl, B.D. & Lieb, J.D. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat. Genet. 36, 900-905 (2004).
    • (2004) Nat. Genet. , vol.36 , pp. 900-905
    • Lee, C.K.1    Shibata, Y.2    Rao, B.3    Strahl, B.D.4    Lieb, J.D.5
  • 27
    • 0036324753 scopus 로고    scopus 로고
    • An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
    • Liu, X.S., Brutlag, D.L. & Liu, J.S. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat. Biotechnol. 20, 835-839 (2002).
    • (2002) Nat. Biotechnol. , vol.20 , pp. 835-839
    • Liu, X.S.1    Brutlag, D.L.2    Liu, J.S.3
  • 28
    • 23844449971 scopus 로고    scopus 로고
    • Genomewide identification of Sko1 target promoters reveals a regulatory network that operates in response to osmotic stress in Saccharomyces cerevisiae
    • Proft, M., Gibbons, F.D., Copeland, M., Roth, F.P. & Struhl, K. Genomewide identification of Sko1 target promoters reveals a regulatory network that operates in response to osmotic stress in Saccharomyces cerevisiae. Eukaryot. Cell 4, 1343-1352 (2005).
    • (2005) Eukaryot. Cell , vol.4 , pp. 1343-1352
    • Proft, M.1    Gibbons, F.D.2    Copeland, M.3    Roth, F.P.4    Struhl, K.5
  • 30
    • 1242342957 scopus 로고    scopus 로고
    • Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification
    • Haverty, P.M., Hansen, U. & Weng, Z. Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification. Nucleic Acids Res. 32, 179-188 (2004).
    • (2004) Nucleic Acids Res. , vol.32 , pp. 179-188
    • Haverty, P.M.1    Hansen, U.2    Weng, Z.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.