Derepression of DNA damage-regulated genes requires yeast TAF(II)s

EMBO Journal

Volumn 19, Issue 15, 2000, Pages 4091-4100

  Li, Bing ^a   Reese, Joseph C ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Crt1; Repression; Ssn6 Tup1; TFIID; Transcription

Indexed keywords

DNA; DNA BINDING PROTEIN; REPRESSOR PROTEIN; RIBONUCLEOTIDE REDUCTASE; TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; CONTROLLED STUDY; DNA DAMAGE; GENE REPRESSION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REPRESSOR GENE; TRANSCRIPTION REGULATION; YEAST;

EID: 0342757661     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/19.15.4091     Document Type: Article

References (64)

1. 2/M but not for general transcription activation. Genes Dev., 10, 2368-2380.
2. Apone, L.M., Virbasius, C.A., Holstege, F.C., Wang, J., Young, R.A. and Green, M.R. (1998) Broad, but not universal, transcriptional requirement for yTAFII17, a histone H3-like TAFII present in TFIID and SAGA. Mol. Cell, 2, 653-661.
3. Brent, R. and Ptashne, M. (1985) A eukaryotic transcriptional activator bearing the DNA specificity of a prokaryotic repressor. Cell, 43, 729-736.
4. Burley, S.K. and Roeder, R.G. (1996) Biochemistry and structural biology of transcription factor IID (TFIID). Annu. Rev. Biochem., 65, 769-799.
5. Chiang, C.M. and Roeder, R.G. (1995) Cloning of an intrinsic human TFIID subunit that interacts with multiple transcriptional activators. Science, 267, 531-536.
6. Cooper, J.P., Roth, S.Y. and Simpson, R.T. (1994) The global transcriptional regulators, SSN6 and TUP1, play distinct roles in the establishment of a repressive chromatin structure. Genes Dev., 8, 1400-1410.
7. Cormack, B.P. and Struhl, K. (1992) The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells. Cell, 69, 685-696.
8. Desany, B.A., Alcasabas, A.A., Bachant, J.B. and Elledge, S.J. (1998) Recovery from DNA replicational stress is the essential function of the S-phase checkpoint pathway. Genes Dev., 12, 2956-2970.
9. Drysdale, C.M. et al. (1998) The Gcn4p activation domain interacts specifically in vitro with RNA polymerase II holoenzyme, TFIID, and the Adap-Gcn5p coactivator complex. Mol. Cell. Biol., 18, 1711-1724.
10. Edmondson, D.G., Smith, M.M. and Roth, S.Y. (1996) Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4. Genes Dev., 10, 1247-1259.
11. Elledge, S.J. and Davis, R.W. (1989) DNA damage induction of ribonucleotide reductase. Mol. Cell. Biol., 7, 2783-2793.
12. Elledge, S.J. and Davis, R.W. (1990) Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase. Genes Dev., 4, 740-751.
13. Elledge, S.J., Zhou, Z. and Allen, J.B. (1992) Ribonucleotide reductase: regulation, regulation, regulation. Trends Biochem. Sci., 17, 119-123.
14. Emery, P., Durand, B., Mach, B. and Reith, W. (1996) RFX proteins, a novel family of DNA binding proteins conserved in the eukaryotic kingdom. Nucleic Acids Res., 24, 803-807.
15. Endo-Ichikawa, Y., Kohno, H., Furukawa, T., Ueda, T., Ogawa, Y., Tokunaga, R. and Taketani, S. (1996) Requirement of multiple DNA-protein interactions for inducible expression of RNR3 gene in Saccharomyces cerevisiae in response to DNA damage. Biochem. Biophys. Res. Commun., 222, 280-286.
16. Grant, P.A., Schieltz, D., Pray-Grant, M.G., Steger, D.J., Reese, J.C., Yates, J.R.R. and Workman, J.L. (1998a) A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation. Cell, 94, 45-53.
17. Grant, P.A., Sterner, D.E., Duggan, L.J., Workman, J.L. and Berger, S.L. (1998b) The SAGA unfolds: convergence of transcription regulators in chromatin-modifying complexes. Trends Cell Biol., 8, 193-197.
18. Green, M.R. (2000) TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes. Trends Biochem. Sci., 25, 59-63.
19. Hahn, S. (1998) The role of TAFs in RNA polymerase II transcription. Cell, 95, 579-582.
20. Herschbach, B.M. and Johnson, A.D. (1993) Transcriptional repression in eukaryotes. Annu. Rev. Cell Biol., 9, 479-509.
21. Hofftmann, A., Oelgeschlager, T. and Roeder, R.G. (1997) Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions? Proc. Natl Acad. Sci. USA, 94, 8928-8935.
22. Holstege, F.C., Jennings, E.G., Wyrick, J.J., Lee, T.I., Hengartner, C.J., Green, M.R., Golub, T.R., Lander, E.S. and Young, R.A. (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell, 95, 717-728.
23. Huang, M. and Elledge, S.J. (1997) Identification of RNR4, encoding a second essential small subunit of ribonucleotide reductase in Saccharomyces cerevisiae. Mol. Cell. Biol., 17, 6105-6113.
24. Huang, M., Zhou, Z. and Elledge, S.J. (1998) The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor. Cell, 94, 595-605.
25. Kiser, G.L. and Weinert, T.A. (1996) Distinct roles of yeast MEC and RAD checkpoint genes in transcriptional induction after DNA damage and implications for function. Mol. Biol. Cell, 7, 703-718.
26. Komarnitsky, P.B., Klebanow, E.R., Weil, P.A. and Denis, C.L. (1998) ADR1-mediated transcriptional activation requires the presence of an intact TFIID complex. Mol. Cell. Biol., 18, 5861-5867.
27. Komarnitsky, P.B., Michel, B. and Buratowski, S. (1999) TFIID-specific yeast TAF40 is essential for the majority of RNA polymerase II-mediated transcription in vivo. Genes Dev., 13, 2484-2489.
28. Krishnamurthy, N., Jackson, B.M., Rhee, E. and Hinnebusch, A.G. (1998) yTAF61 has a general role in RNA polymerase II transcription and is required by GCN4 to recruit the SAGA coactivator complex. Mol. Cell, 2, 683-692.
29. Kuchin, S. and Carlson, M. (1998) Functional relationships of Srb10-Srb11 kinase, carboxy-terminal domain kinase CTDK-I, and transcriptional corepressor Ssn6-Tup1. Mol. Cell. Biol., 18, 1163-1171.
30. Lee, T.I. and Young, R.A. (1998) Regulation of gene expression by TBP-associated proteins. Genes Dev., 12, 1398-1408.
31. Maga, J.A., McClanahan, T.A. and McEntee, K. (1986) Transcriptional regulation of DNA damage responsive (DDR) genes in different rad mutant strains of Saccharomyces cerevisiae. Mol. Gen. Genet., 205, 276-284.
32. Marquez, J.A., Pascual-Ahuir, A., Proft, M. and Serrano, R. (1998) The Ssn6-Tup1 repressor complex of Saccharomyces cerevisiae is involved in the osmotic induction of HOG-dependent and -independent genes. EMBO J., 17, 2543-2553.
33. Martin, J., Halenbeck, R. and Kaufmann, J. (1999) Human transcription factor hTAFII150 (CIF150) is involved in transcriptional regulation of cell cycle progression. Mol. Cell. Biol., 19, 5548-5556.
34. II30 is required for cell cycle progression and specific cellular differentiation programmes. EMBO J., 18, 4823-4834.
35. Michel, B., Komarnitsky, P. and Buratowski, S. (1998) Histone-like TAFs are essential for transcription in vivo. Mol. Cell, 2, 663-673.
36. II250 subunit of TFIID has histone acetyltransferase activity. Cell, 87, 1261-1270.
37. Moqtaderi, Z., Bai, Y., Poon, D., Weil, P.A. and Struhl, K. (1996) TBP-associated factors are not generally required for transcriptional activation in yeast. Nature, 383, 188-191.
38. Moqtaderi, Z., Keaveney, M. and Struhl, K. (1998) The histone H3-like TAF is broadly required for transcription in yeast. Mol. Cell, 2, 675-682.
39. Ogryzko, V.V., Kotani, T., Zhang, X., Schlitz, R.L., Howard, T., Yang, X.J., Howard, B.H., Qin, J. and Nakatani, Y. (1998) Histone-like TAFs within the PCAF histone acetylase complex. Cell, 94, 35-44.
40. Papamichos-Chronakis, M., Conlan, R.S., Gounalaki, N., Copf, T. and Tzamarias, D. (2000) Hrs1/Med3 is a Cyc8-Tup1 corepressor target in the RNA polymerase II holoenzyme. J. Biol. Chem., 275, 8397-8403.
41. Ray, B.L., White, C.I. and Haber, J.E. (1991) The TSM1 gene of Saccharomyces cerevisiae overlaps the MAT locus. Curr. Genet., 20, 25-31.
42. Reese, J.C., Apone, L., Walker, S.S., Griffin, L.A. and Green, M.R. (1994) Yeast TAFIIS in a multisubunit complex required for activated transcription. Nature, 371, 523-527.
43. Reese, J.C., Zhang, Z. and Kurpad, H. (2000) Identification of a novel TFIID subunit, TSG2/TAF48. J. Biol. Chem., 275, 17391-17398.
44. Roth, S.Y. (1995) Chromatin-mediated transcriptional repression in yeast. Curr. Opin. Genet. Dev., 5, 168-173.
45. Sanders, S.L., Klebnaow, E.R. and Weil, P.A. (1999) TAF25p, a non-histone-like subunit of TFIID and SAGA complexes, is essential for total mRNA gene transcription in vivo. J. Biol. Chem., 274, 18847-18850.
46. Schmitt, A.P. and McEntee, K. (1996) Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae. Proc. Natl Acad. Sci. USA, 93, 5777-5782.
47. II145 functions as a core promoter selectivity factor, not a general coactivator. Cell, 90, 615-624.
48. Soldatov, A., Nabirochkina, E., Georgieva, S., Belenkaja, T. and Georgiev, P. (1999) TAFII40 protein is encoded by the e(y)1 gene: biological consequences of mutations. Mol. Cell. Biol., 19, 3769-3778.
49. 1 at the nonpermissive temperature. Mol. Cell. Biol., 17, 3284-3294.
50. Tornow, J. and Santangelo, G.M. (1990) Efficient expression of the Saccharomyces cerevisiae glycolytic gene ADH1 is dependent upon a cis-acting regulatory element (UASRPG) found initially in genes encoding ribosomal proteins. Gene, 90, 79-85.
51. Tsukihashi, Y., Miyake, T., Kawaichi, M. and Kokubo, T. (2000) Impaired core promoter recognition caused by novel yeast TAF145 mutations can be restored by creating a canonical TATA element within the promoter region of the TUB2 gene. Mol. Cell. Biol., 20, 2385-2399.
52. Uesugi, M. and Verdine, G.L. (1999) The α-helical FXXPhiPhi motif in p53: TAF interaction and discrimination by MDM2. Proc. Natl Acad. Sci. USA, 96, 14801-14806.
53. Uesugi, M., Nyanguile, O., Lu, H., Levine, A.J. and Verdine, G.L. (1997) Induced α helix in the VP16 activation domain upon binding to a human TAF. Science, 277, 1310-1313.
54. Verdone, L., Camilloni, G., Di Mauro, E. and Caserta, M. (1996) Chromatin remodeling during Saccharomyces cerevisiae ADH2 gene activation. Mol. Cell. Biol., 16, 1978-1988.
55. Verrijzer, C.P. and Tjian, R. (1996) TAFs mediate transcriptional activation and promoter selectivity. Trends Biochem. Sci., 21, 338-342.
56. Walker, S.S., Reese, J.C., Apone, L.M. and Green, M.R. (1996) Transcription activation in cells lacking TAFIIS. Nature, 383, 185-188.
57. 1/S cyclin genes and regulated by the cellular growth state. Cell, 90, 607-614.
58. Wang, E.H. and Tjian, R. (1994) Promoter-selective transcriptional defect in cell cycle mutant ts13 rescued by hTAFII250. Science, 263, 811-814.
59. Welch, M.D., Vinh, D.B., Okamura, H.H. and Drubin, D.G. (1993) Screens for extragenic mutations that fail to complement act1 alleles identify genes that are important for actin function in Saccharomyces cerevisiae. Genetics, 135, 265-274.
60. Wieczorek, E., Brand, M., Jacq, X. and Tora, L. (1998) Function of TAF(II)-containing complex without TBP in transcription by RNA polymerase II. Nature, 393, 187-191.
61. Yagle, K. and McEntee, K. (1990) The DNA damage-inducible gene DIN1 of Saccharomyces cerevisiae encodes a regulatory subunit of ribonucleotide reductase and is identical to RNR3. Mol. Cell. Biol., 10, 5553-5557.
62. Zhou, Z. and Elledge, S.J. (1992) Isolation of crt mutants constitutive for transcription of the DNA damage inducible gene RNR3 in Saccharomyces cerevisiae. Genetics, 131, 851-866.
63. Zhou, Z. and Elledge, S.J. (1993) DUN1 encodes a protein kinase that controls the DNA damage response in yeast. Cell, 75, 1119-1127.
64. Zhou, J., Zwicker, J., Szymanski, P., Levine, M. and Tjian, R. (1998) TAFII mutations disrupt Dorsal activation in the Drosophila embryo. Proc. Natl Acad. Sci. USA, 95, 13483-13488.