-
1
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert R, Jeong H, Barabasi AL. 2000. Error and attack tolerance of complex networks. Nature 406:378-382
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.L.3
-
2
-
-
0020383408
-
Functionally homologous cell cycle control genes in budding and fission yeast
-
Beach D, Durkacz B, Nurse P. 1982. Functionally homologous cell cycle control genes in budding and fission yeast. Nature 300:706-709
-
(1982)
Nature
, vol.300
, pp. 706-709
-
-
Beach, D.1
Durkacz, B.2
Nurse, P.3
-
3
-
-
4243071596
-
The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum
-
Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL. 2003. The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol. 1:E5
-
(2003)
PLoS Biol.
, vol.1
-
-
Bozdech, Z.1
Llinas, M.2
Pulliam, B.L.3
Wong, E.D.4
Zhu, J.5
Derisi, J.L.6
-
4
-
-
0022534202
-
A yeast gene that is essential for release from glucose repression encodes a protein kinase
-
Celenza JL, Carlson M. 1986. A yeast gene that is essential for release from glucose repression encodes a protein kinase. Science 233:1175-1180
-
(1986)
Science
, vol.233
, pp. 1175-1180
-
-
Celenza, J.L.1
Carlson, M.2
-
6
-
-
0032509179
-
Comparison of the complete protein sets of worm and yeast: Orthology and divergence
-
Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, et al. 1998. Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science 282:2022-2028
-
(1998)
Science
, vol.282
, pp. 2022-2028
-
-
Chervitz, S.A.1
Aravind, L.2
Sherlock, G.3
Ball, C.A.4
Koonin, E.V.5
-
7
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright AJ, Van Dongen S, Ouzounis CA. 2002. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30:1575-1584
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
8
-
-
0033976299
-
Regulatory subunit interactions of the 26S proteasome, a complex problem
-
Ferrell K, Wilkinson CR, Dubiel W, Gordon C. 2000. Regulatory subunit interactions of the 26S proteasome, a complex problem. Trends Biochem. Sci. 25:83-88
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 83-88
-
-
Ferrell, K.1
Wilkinson, C.R.2
Dubiel, W.3
Gordon, C.4
-
9
-
-
0026619467
-
Calcineurin mediates inhibition by FK506 and cyclosporin of recovery from alpha-factor arrest in yeast
-
Foor F, Parent SA, Morin N, Dahl AM, Ramadan N, et al. 1992. Calcineurin mediates inhibition by FK506 and cyclosporin of recovery from alpha-factor arrest in yeast. Nature 360:682-684
-
(1992)
Nature
, vol.360
, pp. 682-684
-
-
Foor, F.1
Parent, S.A.2
Morin, N.3
Dahl, A.M.4
Ramadan, N.5
-
10
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, et al. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415:141-147
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
-
11
-
-
0037567359
-
Yeast, flies, worms, and fish in the study of human disease
-
Hariharan IK, Haber DA. 2003. Yeast, flies, worms, and fish in the study of human disease. N. Engl. J. Med. 348:2457-2463
-
(2003)
N. Engl. J. Med.
, vol.348
, pp. 2457-2463
-
-
Hariharan, I.K.1
Haber, D.A.2
-
12
-
-
40749088394
-
The Princeton Protein Orthology Database (P-POD): A comparative genomics analysis tool for biologists
-
Heinicke S, Livstone MS, Lu C, Oughtred R, Kang F, et al. 2007. The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists. PLoS ONE 2(8):e766
-
(2007)
PLoS ONE
, vol.2
, Issue.8
-
-
Heinicke, S.1
Livstone, M.S.2
Lu, C.3
Oughtred, R.4
Kang, F.5
-
13
-
-
0041305909
-
Activation of yeast Snf1 and mammalian AMP-activated protein kinase by upstream kinases
-
Hong SP, Leiper FC, Woods A, Carling D, Carlson M. 2003. Activation of yeast Snf1 and mammalian AMP-activated protein kinase by upstream kinases. Proc. Natl. Acad. Sci. USA 100:8839-8843
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8839-8843
-
-
Hong, S.P.1
Leiper, F.C.2
Woods, A.3
Carling, D.4
Carlson, M.5
-
14
-
-
10244242604
-
POINT: A database for the prediction of protein-protein interactions based on the orthologous interactome
-
Huang TW, Tien AC, Huang WS, Lee YC, Peng CL, et al. 2004. POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. Bioinformatics 20:3273-3276
-
(2004)
Bioinformatics
, vol.20
, pp. 3273-3276
-
-
Huang, T.W.1
Tien, A.C.2
Huang, W.S.3
Lee, Y.C.4
Peng, C.L.5
-
16
-
-
0021925403
-
Functional homology of mammalian and yeast RAS genes
-
Kataoka T, Powers S, Cameron S, Fasano O, Goldfarb M, et al. 1985. Functional homology of mammalian and yeast RAS genes. Cell 40:19-26
-
(1985)
Cell
, vol.40
, pp. 19-26
-
-
Kataoka, T.1
Powers, S.2
Cameron, S.3
Fasano, O.4
Goldfarb, M.5
-
17
-
-
0141593601
-
Conserved pathways within bacteria and yeast as revealed by global protein network alignment
-
Kelley BP, SharanR, Karp RM, SittlerT, Root DE,et al. 2003. Conserved pathways within bacteria and yeast as revealed by global protein network alignment. Proc. Natl. Acad. Sci. USA 100:11394-11399
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 11394-11399
-
-
Kelley, B.P.1
-
18
-
-
3442886313
-
PathBLAST: A tool for alignment of protein interaction networks
-
Kelley BP, Yuan B, Lewitter F, Sharan R, Stockwell BR, Ideker T. 2004. PathBLAST: a tool for alignment of protein interaction networks. Nucleic Acids Res. 32:W83-88
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kelley, B.P.1
Yuan, B.2
Lewitter, F.3
Sharan, R.4
Stockwell, B.R.5
Ideker, T.6
-
19
-
-
3142592324
-
Methods in comparative genomics: Genome correspondence, gene identification and regulatory motif discovery
-
Kellis M, Patterson N, Birren B, Berger B, Lander ES. 2004. Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery. J. Comput. Biol. 11:319-355
-
(2004)
J. Comput. Biol.
, vol.11
, pp. 319-355
-
-
Kellis, M.1
Patterson, N.2
Birren, B.3
Berger, B.4
Lander, E.S.5
-
20
-
-
33645461822
-
Ulysses\-an application for the projection of molecular interactions across species
-
Kemmer D, Huang Y, Shah SP, Lim J, Brumm J, et al. 2005. Ulysses\-an application for the projection of molecular interactions across species. Genome Biol. 6:R106
-
(2005)
Genome Biol.
, vol.6
-
-
Kemmer, D.1
Huang, Y.2
Shah, S.P.3
Lim, J.4
Brumm, J.5
-
21
-
-
33645985807
-
Pair-wise alignment of protein interaction networks
-
Koyuturk M, Kim Y, Topkara U, Subramaniam S, Szpankowski W, Grama A. 2006. Pair-wise alignment of protein interaction networks. J. Comput. Biol. 13:182-199
-
(2006)
J. Comput. Biol.
, vol.13
, pp. 182-199
-
-
Koyuturk, M.1
Kim, Y.2
Topkara, U.3
Subramaniam, S.4
Szpankowski, W.5
Grama, A.6
-
22
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, et al. 2006. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440:637-643
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
-
23
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
24
-
-
0141633042
-
Discovery of gene function by expression profiling of the malaria parasite life cycle
-
Le Roch KG, Zhou Y, Blair PL, Grainger M, Moch JK, et al. 2003. Discovery of gene function by expression profiling of the malaria parasite life cycle. Science 301:1503-1508
-
(2003)
Science
, vol.301
, pp. 1503-1508
-
-
Le Roch, K.G.1
Zhou, Y.2
Blair, P.L.3
Grainger, M.4
Moch, J.K.5
-
25
-
-
0027145633
-
Mutations of a mutS homolog in hereditary nonpolyposis colorectal cancer
-
Leach FS, Nicolaides NC, Papadopoulos N, Liu B, Jen J, et al. 1993. Mutations of a mutS homolog in hereditary nonpolyposis colorectal cancer. Cell 75:1215-1225
-
(1993)
Cell
, vol.75
, pp. 1215-1225
-
-
Leach, F.S.1
Nicolaides, N.C.2
Papadopoulos, N.3
Liu, B.4
Jen, J.5
-
26
-
-
0023647143
-
Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2
-
Lee MG, Nurse P. 1987. Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2. Nature 327:31-35
-
(1987)
Nature
, vol.327
, pp. 31-35
-
-
Lee, M.G.1
Nurse, P.2
-
27
-
-
0036125446
-
Cross-referencing eukary-otic genomes: TIGR Orthologous Gene Alignments (TOGA)
-
Lee Y, Sultana R, Pertea G, Cho J, Karamycheva S, et al. 2002. Cross-referencing eukary-otic genomes: TIGR Orthologous Gene Alignments (TOGA). Genome Res. 12:493-502
-
(2002)
Genome Res.
, vol.12
, pp. 493-502
-
-
Lee, Y.1
Sultana, R.2
Pertea, G.3
Cho, J.4
Karamycheva, S.5
-
28
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li L, Stoeckert CJ Jr, Roos DS. 2003. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13:2178-2189
-
(2003)
Genome Res.
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert Jr., C.J.2
Roos, D.S.3
-
29
-
-
33748661458
-
NetAlign: A web-based tool for comparison of protein interaction networks
-
DOI 10.1093/bioinformatics/btl287
-
Liang Z, Xu M, Teng M, Niu L. 2006. NetAlign: a web-based tool for comparison of protein interaction networks. Bioinformatics 22:2175-2177 (Pubitemid 44390916)
-
(2006)
Bioinformatics
, vol.22
, Issue.17
, pp. 2175-2177
-
-
Liang, Z.1
Xu, M.2
Teng, M.3
Niu, L.4
-
30
-
-
0027136828
-
Genomic instability in colorectal cancer: Relationship to clinicopathological variables and family history
-
Lothe RA, Peltomaki P, Meling GI, Aaltonen LA, Nystrom-Lahti M,et al. 1993. Genomic instability in colorectal cancer: relationship to clinicopathological variables and family history. Cancer Res. 53:5849-5852
-
(1993)
Cancer Res.
, vol.53
, pp. 5849-5852
-
-
Lothe, R.A.1
Peltomaki, P.2
Meling, G.I.3
-
31
-
-
33748747706
-
Mammalian TAK1 activates Snf1 protein kinase in yeast and phosphorylates AMP-activated protein kinase in vitro
-
Momcilovic M, Hong SP, Carlson M. 2006. Mammalian TAK1 activates Snf1 protein kinase in yeast and phosphorylates AMP-activated protein kinase in vitro. J. Biol. Chem. 281:25336-25343
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 25336-25343
-
-
Momcilovic, M.1
Hong, S.P.2
Carlson, M.3
-
34
-
-
0033602030
-
SNAREs and the secretory pathway-lessons from yeast
-
Pelham HR. 1999. SNAREs and the secretory pathway-lessons from yeast. Exp. Cell Res. 247:1-8
-
(1999)
Exp. Cell Res.
, vol.247
, pp. 1-8
-
-
Pelham, H.R.1
-
35
-
-
0027140481
-
Mi-crosatellite instability is associated with tumors that characterize the hereditary nonpoly-posis colorectal carcinoma syndrome
-
Peltomaki P, Lothe RA, Aaltonen LA, Pylkkanen L, Nystrom-Lahti M, et al. 1993. Mi-crosatellite instability is associated with tumors that characterize the hereditary nonpoly-posis colorectal carcinoma syndrome. Cancer Res. 53:5853-5855
-
(1993)
Cancer Res.
, vol.53
, pp. 5853-5855
-
-
Peltomaki, P.1
Lothe, R.A.2
Aaltonen, L.A.3
Pylkkanen, L.4
Nystrom-Lahti, M.5
-
36
-
-
33747870202
-
YOGY: A web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms
-
Penkett CJ, Morris JA, Wood V, Bahler J. 2006. YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. Nucleic Acids Res. 34:W330-34
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Penkett, C.J.1
Morris, J.A.2
Wood, V.3
Bahler, J.4
-
37
-
-
33847064282
-
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
-
Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, et al. 2006. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. J. Biol. 5:11
-
(2006)
J. Biol.
, vol.5
, pp. 11
-
-
Reguly, T.1
Breitkreutz, A.2
Boucher, L.3
Breitkreutz, B.J.4
Hon, G.C.5
-
38
-
-
0033664559
-
Classification of transmembrane protein families in the Caenorhabditis elegansgenome and identification of human orthologs
-
Remm M, Sonnhammer E. 2000. Classification of transmembrane protein families in the Caenorhabditis elegansgenome and identification of human orthologs.Genome Res. 10:1679-1689
-
(2000)
Genome Res.
, vol.10
, pp. 1679-1689
-
-
Remm, M.1
Sonnhammer, E.2
-
39
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm CE, Sonnhammer EL. 2001. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol. 314:1041-1052
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
40
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
Rubin GM, Yandell MD, Wortman JR, Gabor Miklos GL, Nelson CR, et al. 2000. Comparative genomics of the eukaryotes. Science 287:2204-2215
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Gabor Miklos, G.L.4
Nelson, C.R.5
-
41
-
-
0037328926
-
Snf1 protein kinase: A key player in the response to cellular stress in yeast
-
Sanz P. 2003. Snf1 protein kinase: a key player in the response to cellular stress in yeast. Biochem. Soc. Trans. 31:178-181
-
(2003)
Biochem. Soc. Trans.
, vol.31
, pp. 178-181
-
-
Sanz, P.1
-
42
-
-
13844314048
-
Conserved patterns of protein interaction in multiple species
-
Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, et al. 2005. Conserved patterns of protein interaction in multiple species. Proc. Natl. Acad. Sci. USA 102:1974-1979
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 1974-1979
-
-
Sharan, R.1
Suthram, S.2
Kelley, R.M.3
Kuhn, T.4
McCuine, S.5
-
43
-
-
0027306173
-
Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair
-
Strand M, Prolla TA, Liskay RM, Petes TD. 1993. Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365:274-276
-
(1993)
Nature
, vol.365
, pp. 274-276
-
-
Strand, M.1
Prolla, T.A.2
Liskay, R.M.3
Petes, T.D.4
-
44
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformat. 4:41
-
(2003)
BMC Bioinformat.
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
-
47
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. 2001. The sequence of the human genome. Science 291:1304-1351
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
-
48
-
-
33644876253
-
Database resources of the National Center for Biotechnology Information
-
Wheeler DL, Barrett T,Benson DA, Bryant SH, Canese K, et al. 2006. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 34:D173-80
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Wheeler, D.L.1
Barrett Tbenson, D.A.2
Bryant, S.H.3
Canese, K.4
-
49
-
-
0033790619
-
Yeast homotypic vacuole fusion: A window on organelle trafficking mechanisms
-
Wickner W, Haas A. 2000. Yeast homotypic vacuole fusion: a window on organelle trafficking mechanisms. Annu. Rev. Biochem. 69:247-275
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 247-275
-
-
Wickner, W.1
Haas, A.2
-
50
-
-
0028070457
-
Yeast SNF1 is functionally related to mammalian AMP-activated protein kinase and regulates acetyl-CoA carboxylase in vivo
-
Woods A, Munday MR, Scott J, Yang X, Carlson M, Carling D. 1994. Yeast SNF1 is functionally related to mammalian AMP-activated protein kinase and regulates acetyl-CoA carboxylase in vivo. J. Biol. Chem. 269:19509-19515
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 19509-19515
-
-
Woods, A.1
Munday, M.R.2
Scott, J.3
Yang, X.4
Carlson, M.5
Carling, D.6
-
51
-
-
0036916852
-
Interaction and domain networks of yeast
-
Wuchty S. 2002. Interaction and domain networks of yeast. Proteomics 2:1715-1723
-
(2002)
Proteomics
, vol.2
, pp. 1715-1723
-
-
Wuchty, S.1
-
52
-
-
3543099834
-
Evolution and topology in the yeast protein interaction network
-
Wuchty S. 2004. Evolution and topology in the yeast protein interaction network. Genome Res. 14:1310-1314
-
(2004)
Genome Res.
, vol.14
, pp. 1310-1314
-
-
Wuchty, S.1
-
53
-
-
33644931696
-
Stable evolutionary signal in a yeast protein interaction network
-
Wuchty S, Barabasi AL, Ferdig MT. 2006. Stable evolutionary signal in a yeast protein interaction network. BMC Evol. Biol. 6:8
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 8
-
-
Wuchty, S.1
Barabasi, A.L.2
Ferdig, M.T.3
-
55
-
-
15944400987
-
Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs
-
Zheng XH, Lu F, Wang ZY, Zhong F, Hoover J, Mural R. 2005. Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs. Bioinformatics 21:703-710
-
(2005)
Bioinformatics
, vol.21
, pp. 703-710
-
-
Zheng, X.H.1
Lu, F.2
Wang, Z.Y.3
Zhong, F.4
Hoover, J.5
Mural, R.6
|