-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F. et al. (2000) The genome sequence of Drosophila melanogaster. Science, 287, 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
2
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio,S., Chapman,J., Stupka,E., Putnam,N., Chia,J.M., Dehal,P., Christoffels,A., Rash,S., Hoon,S., Smit,A. et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science, 297, 1301-1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.M.5
Dehal, P.6
Christoffels, A.7
Rash, S.8
Hoon, S.9
Smit, A.10
-
3
-
-
2542542256
-
Ultraconserved elements in the human genome
-
Bejerano,G., Pheasant,M., Makunin,I., Stephen,S., Kent,W.J., Mattick,J.S. and Haussler,D. (2004) Ultraconserved elements in the human genome. Science, 304, 1321-1325.
-
(2004)
Science
, vol.304
, pp. 1321-1325
-
-
Bejerano, G.1
Pheasant, M.2
Makunin, I.3
Stephen, S.4
Kent, W.J.5
Mattick, J.S.6
Haussler, D.7
-
4
-
-
15944419050
-
-
Celera Genomics Celera Mouse Genome Database flat files release 13, Release Notes
-
Celera Genomics (2002a) Celera Mouse Genome Database flat files release 13, Release Notes.
-
(2002)
-
-
-
5
-
-
15944418355
-
-
Celera Genomics Celera Human Genome Database flat files release 27, Release Notes
-
Celera Genomics (2002b) Celera Human Genome Database flat files release 27, Release Notes.
-
(2002)
-
-
-
6
-
-
0037246585
-
Ensembl 2002: Accommodating comparative genomics
-
Clamp,M., Andrews,D., Barker,D., Bevan,P., Cameron,G., Chen,Y., Clark,L., Cox,T., Cuff,J., Curwen,V. et al. (2003) Ensembl 2002: accommodating comparative genomics. Nucleic Acids Res., 31 38-42.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 38-42
-
-
Clamp, M.1
Andrews, D.2
Barker, D.3
Bevan, P.4
Cameron, G.5
Chen, Y.6
Clark, L.7
Cox, T.8
Cuff, J.9
Curwen, V.10
-
7
-
-
2242464840
-
The draft genome of Ciona intestinalis: Insights into chordate and vertebrate origins
-
Dehal,P., Satou,Y., Campbell,R.K., Chapman,J., Degnan,B., De Tomaso,A., Davidson,B., DiGregorio,A., Gelpke,M., Goodstein,D.M. et al. (2002) The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science, 298, 2157-2167.
-
(2002)
Science
, vol.298
, pp. 2157-2167
-
-
Dehal, P.1
Satou, Y.2
Campbell, R.K.3
Chapman, J.4
Degnan, B.5
De Tomaso, A.6
Davidson, B.7
DiGregorio, A.8
Gelpke, M.9
Goodstein, D.M.10
-
8
-
-
0033153375
-
Alignment of whole genomes
-
Delcher,A.L., Kasif,S., Fleischmann,R.D., Peterson,J., White,O. and Salzberg,S.L. (1999) Alignment of whole genomes. Nucleic Acids Res., 27, 2369-2376.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2369-2376
-
-
Delcher, A.L.1
Kasif, S.2
Fleischmann, R.D.3
Peterson, J.4
White, O.5
Salzberg, S.L.6
-
9
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch,W.M. (1970) Distinguishing homologous from analogous proteins. Syst. Zool., 19, 99-113.
-
(1970)
Syst. Zool.
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
10
-
-
0034178257
-
Homology a personal view on some of the problems
-
Fitch,W.M. (2000) Homology a personal view on some of the problems. Trends Genet., 16, 227-231.
-
(2000)
Trends Genet.
, vol.16
, pp. 227-231
-
-
Fitch, W.M.1
-
11
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M., Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C., Burch,P.E. et al. (2004) Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature, 428, 493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Muzny, D.M.4
Sodergren, E.J.5
Scherer, S.6
Scott, G.7
Steffen, D.8
Worley, K.C.9
Burch, P.E.10
-
12
-
-
0037020114
-
The genome sequence of the malaria mosquito Anopheles gambiae
-
Holt,R.A., Subramanian,G.M., Halpern,A., Sutton,G.G., Charlab,R., Nusskern,D.R., Wincker,P., Clark,A.G., Ribeiro,J.M., Wides,R. et al. (2002) The genome sequence of the malaria mosquito Anopheles gambiae. Science, 298, 129-149.
-
(2002)
Science
, vol.298
, pp. 129-149
-
-
Holt, R.A.1
Subramanian, G.M.2
Halpern, A.3
Sutton, G.G.4
Charlab, R.5
Nusskern, D.R.6
Wincker, P.7
Clark, A.G.8
Ribeiro, J.M.9
Wides, R.10
-
13
-
-
0030446464
-
Methods for comparing a DNA sequence with a protein sequence
-
Huang,X. and Zhang,J. (1996) Methods for comparing a DNA sequence with a protein sequence. Comput. Appl. Biosci., 12, 497-506.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 497-506
-
-
Huang, X.1
Zhang, J.2
-
14
-
-
0034893812
-
Orthologs and paralogs - We need to get it right
-
Jensen,R.A. (2001) Orthologs and paralogs - we need to get it right. Genome Biol., 2, INTERACTIONS1002.
-
(2001)
Genome Biol.
, vol.2
-
-
Jensen, R.A.1
-
15
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
-
(2002)
Genome Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
16
-
-
0035027535
-
An apology for orthologs - Or brave new memes
-
Koonin,E.V. (2001) An apology for orthologs - or brave new memes. Genome Biol., 2, COMMENT1005.
-
(2001)
Genome Biol.
, vol.2
-
-
Koonin, E.V.1
-
17
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander,E.S., Linton,L.M., Birren,B., Nusbaum,C., Zody,M.C., Baldwin,J., Devon,K., Dewar,K., Doyle,M., Fitz Hugh,W. et al. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
Fitz Hugh, W.10
-
18
-
-
0035912779
-
Genomic analysis of orthologous mouse and human olfactory receptor loci
-
Lane,R.P., Cutforth,T., Young,J., Athanasiou,M., Friedman,C., Rowen,L., Evans,G., Axel,R., Hood,L. and Trask,B.J. et al. (2001) Genomic analysis of orthologous mouse and human olfactory receptor loci. Proc. Natl Acad. Sci. USA, 98, 7390-7395.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7390-7395
-
-
Lane, R.P.1
Cutforth, T.2
Young, J.3
Athanasiou, M.4
Friedman, C.5
Rowen, L.6
Evans, G.7
Axel, R.8
Hood, L.9
Trask, B.J.10
-
19
-
-
0036125446
-
Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)
-
Lee,Y., Sultana,R., Pertea,G., Cho,J., Karamycheva,S., Tsai,J., Parvizi,B., Cheung,F., Antonescu,V., White,J. et al. (2002) Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA). Genome Res., 12, 493-502.
-
(2002)
Genome Res.
, vol.12
, pp. 493-502
-
-
Lee, Y.1
Sultana, R.2
Pertea, G.3
Cho, J.4
Karamycheva, S.5
Tsai, J.6
Parvizi, B.7
Cheung, F.8
Antonescu, V.9
White, J.10
-
20
-
-
0034783060
-
Enrichment of regulatory signals in conserved non-coding genomic sequence
-
Levy,S., Hannenhalli,S. and Workman,C. (2001) Enrichment of regulatory signals in conserved non-coding genomic sequence. Bioinformatics, 17, 871-877.
-
(2001)
Bioinformatics
, vol.17
, pp. 871-877
-
-
Levy, S.1
Hannenhalli, S.2
Workman, C.3
-
21
-
-
0032483028
-
Evolutionary parameters of the transcribed mammalian genome: An analysis of 2,820 orthologous rodent and human sequences
-
Makalowski,W. and Boguski,M.S. (1998) Evolutionary parameters of the transcribed mammalian genome: an analysis of 2,820 orthologous rodent and human sequences. Proc. Natl Acad. Sci. USA, 95, 9407-9412.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9407-9412
-
-
Makalowski, W.1
Boguski, M.S.2
-
22
-
-
10744222156
-
Identification and characterization of multi-species conserved sequences
-
Margulies,E.H., Blanchette,M., Haussler,D. and Green,E.D. (2003) Identification and characterization of multi-species conserved sequences. Genome Res., 13, 2507-2518.
-
(2003)
Genome Res.
, vol.13
, pp. 2507-2518
-
-
Margulies, E.H.1
Blanchette, M.2
Haussler, D.3
Green, E.D.4
-
23
-
-
0037204994
-
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome
-
Mural,R.J., Adams,M.D., Myers,E.W., Smith,H.O., Miklos,G.L., Wides,R., Halpem,A., Li,P.W., Sutton,G.G., Nadeau,J. et al. (2002) A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Science, 296, 1661-1671.
-
(2002)
Science
, vol.296
, pp. 1661-1671
-
-
Mural, R.J.1
Adams, M.D.2
Myers, E.W.3
Smith, H.O.4
Miklos, G.L.5
Wides, R.6
Halpem, A.7
Li, P.W.8
Sutton, G.G.9
Nadeau, J.10
-
24
-
-
0033569387
-
The promise of comparative genomics in mammals
-
458-462
-
O'Brien,S.J., Menotti-Raymond,M., Murphy,W.J., Nash,W.G., Wienberg,J., Stanyon,R., Copeland,N.G., Jenkins,N.A., Womack,J.E. and Marshall Graves,J.A. (1999) The promise of comparative genomics in mammals. Science, 286, 458-462, 479-481.
-
(1999)
Science
, vol.286
, pp. 479-481
-
-
O'Brien, S.J.1
Menotti-Raymond, M.2
Murphy, W.J.3
Nash, W.G.4
Wienberg, J.5
Stanyon, R.6
Copeland, N.G.7
Jenkins, N.A.8
Womack, J.E.9
Marshall Graves, J.A.10
-
25
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm,M., Storm,C.E. and Sonnhammer,E.L. (2001) Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J. Mol. Biol., 314, 1041-1052.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.3
-
26
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
Rubin,G.M., Yandell,M.D., Wortman,J.R., Gabor Miklos,G.L., Nelson,C.R., Hariharan,I.K., Fortini,M.E., Li,P.W., Apweiler,R., Heischmann,W. et al. (2000) Comparative genomics of the eukaryotes. Science, 287, 2204-2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Gabor Miklos, G.L.4
Nelson, C.R.5
Hariharan, I.K.6
Fortini, M.E.7
Li, P.W.8
Apweiler, R.9
Heischmann, W.10
-
27
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz,S., Kent,W.J., Smit,A., Zhang,Z., Baertsch,R., Hardison,R.C., Haussler,D. and Miller,W. (2003) Human-mouse alignments with BLASTZ. Genome Res., 13, 103-107.
-
(2003)
Genome Res.
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.C.6
Haussler, D.7
Miller, W.8
-
28
-
-
4243088097
-
The Genome Sequence of Caenorhabditis briggsae: A platform for comparative genomics
-
Stein,L.D., Bao,Z., Blasiar,D., Blumenthal,T., Brent,M.R., Chen,N., Chinwalla,A., Clarke,L., Clee,C., Coghlan,A. et al. (2003) The Genome Sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol., 1, E45.
-
(2003)
PLoS Biol.
, vol.1
-
-
Stein, L.D.1
Bao, Z.2
Blasiar, D.3
Blumenthal, T.4
Brent, M.R.5
Chen, N.6
Chinwalla, A.7
Clarke, L.8
Clee, C.9
Coghlan, A.10
-
29
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov,R.L., Koonin,E.V. and Lipman,D.J. (1997) A genomic perspective on protein families. Science, 278, 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
30
-
-
0032509302
-
Genome sequence of the nematode C. elegans: A platform for investigating biology
-
The C. elegans Sequencing Consortium
-
The C. elegans Sequencing Consortium (1998) Genome sequence of the nematode C. elegans: a platform for investigating biology. Science, 282, 2012-2018.
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
31
-
-
0041465867
-
Comparative analyses of multi-species sequences from targeted genomic regions
-
Thomas,J.W., Touchman,J.W., Blakesley,R.W., Bouffard,G.G., Beckstrom-Sternberg,S.M., Margulies,E.H., Blanchette,M., Siepel,A.C., Thomas,P.J., McDowell,J.C. et al. (2003a) Comparative analyses of multi-species sequences from targeted genomic regions. Nature, 424, 788-793.
-
(2003)
Nature
, vol.424
, pp. 788-793
-
-
Thomas, J.W.1
Touchman, J.W.2
Blakesley, R.W.3
Bouffard, G.G.4
Beckstrom-Sternberg, S.M.5
Margulies, E.H.6
Blanchette, M.7
Siepel, A.C.8
Thomas, P.J.9
McDowell, J.C.10
-
32
-
-
0141742293
-
PANTHER: A library of protein families and subfamilies indexed by function
-
Thomas,P.D., Campbell,M.J., Kejariwal,A., Mi,H., Karlak,B., Daverman,R., Diemer,K., Muruganujan,A. and Narechania,A. (2003b) PANTHER: a library of protein families and subfamilies indexed by function. Genome Res., 13, 2129-2141.
-
(2003)
Genome Res.
, vol.13
, pp. 2129-2141
-
-
Thomas, P.D.1
Campbell, M.J.2
Kejariwal, A.3
Mi, H.4
Karlak, B.5
Daverman, R.6
Diemer, K.7
Muruganujan, A.8
Narechania, A.9
-
33
-
-
0037249501
-
PANTHER: A browsable database of gene products organized by biological function, using curated protein family and subfamily classification
-
Thomas,P.D., Kejariwal,A., Campbell,M.J., Mi,H., Diemer,K., Guo,N., Ladunga,I., Ulitsky-Lazareva,B., Muruganujan,A., Rabkin,S., Vandergriff,J.A. and Doremieux,O. (2003c) PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res., 31, 334-341.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 334-341
-
-
Thomas, P.D.1
Kejariwal, A.2
Campbell, M.J.3
Mi, H.4
Diemer, K.5
Guo, N.6
Ladunga, I.7
Ulitsky-Lazareva, B.8
Muruganujan, A.9
Rabkin, S.10
Vandergriff, J.A.11
Doremieux, O.12
-
34
-
-
0035895505
-
The sequence of the human genome
-
Venter,J.C., Adams,M.D., Myers,E.W., Li,P.W., Mural,R.J., Sutton,G.G., Smith,H.O., Yandell,M., Evans,C.A., Holt,R.A. et al. (2001) The sequence of the human genome. Science, 291, 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
-
35
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston,R.H., Lindblad-Toh,K., Birney,E., Rogers,J., Abril,J.F., Agarwal,P., Agarwal,P., Agarwala,R., Ainscough,R., Alexandersson,M. et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature, 420, 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
Agarwal, P.7
Agarwala, R.8
Ainscough, R.9
Alexandersson, M.10
-
36
-
-
0032835248
-
Human and nematode orthologs - Lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans
-
Wheelan,S.J., Boguski,M.S., Duret,L. and Makalowski,W. (1999) Human and nematode orthologs - lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans. Gene, 238, 163-170.
-
(1999)
Gene
, vol.238
, pp. 163-170
-
-
Wheelan, S.J.1
Boguski, M.S.2
Duret, L.3
Makalowski, W.4
-
37
-
-
0037020194
-
Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster
-
Zdobnov,E.M., von Mering,C., Letunic,I., Torrents,D., Suyama,M., Copley,R.R., Christophides,G.K., Thomasova,D., Holt,R.A., Subramanian,G.M. et al. (2002) Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster. Science, 298, 149-159.
-
(2002)
Science
, vol.298
, pp. 149-159
-
-
Zdobnov, E.M.1
von Mering, C.2
Letunic, I.3
Torrents, D.4
Suyama, M.5
Copley, R.R.6
Christophides, G.K.7
Thomasova, D.8
Holt, R.A.9
Subramanian, G.M.10
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