-
1
-
-
0029623184
-
Computational methods to predict binding free energy in ligand-receptor complexes
-
Ajay; Murcko, M. A. Computational methods to predict binding free energy in ligand-receptor complexes. J. Med. Chem. 1995, 38, 4953-4967.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 4953-4967
-
-
Ajay1
Murcko, M.A.2
-
3
-
-
0033668846
-
Discovering high-affinity ligands from the computationally predicted structures and affinities of small molecules bound to a target: A virtual screening approach
-
Marrone, T. J.; Luty, B. A.; Rose, P. W. Discovering high-affinity ligands from the computationally predicted structures and affinities of small molecules bound to a target: A virtual screening approach. Perspect. Drug Discovery Des. 2000, 20, 209-230.
-
(2000)
Perspect. Drug Discovery Des.
, vol.20
, pp. 209-230
-
-
Marrone, T.J.1
Luty, B.A.2
Rose, P.W.3
-
4
-
-
0034645763
-
Knowledge-based scoring function to predict protein-ligand interactions
-
Gohlke, H.; Hendlich, M.; Klebe, G. Knowledge-based scoring function to predict protein-ligand interactions. J. Mol. Biol. 2000, 295, 337-356.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 337-356
-
-
Gohlke, H.1
Hendlich, M.2
Klebe, G.3
-
5
-
-
0036022960
-
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
-
Wang, R.; Lai, L.; Wang, S. Further development and validation of empirical scoring functions for structure-based binding affinity prediction. J. Comput.-Aided Mol. Des. 2002, 16, 11-26.
-
(2002)
J. Comput.-Aided Mol. Des.
, vol.16
, pp. 11-26
-
-
Wang, R.1
Lai, L.2
Wang, S.3
-
6
-
-
7044239742
-
Free energy calculations: Applications to chemical and biochemical phenomena
-
Kollman, P. Free energy calculations: Applications to chemical and biochemical phenomena. Chem. Rev. 1993, 93, 2395-2417.
-
(1993)
Chem. Rev.
, vol.93
, pp. 2395-2417
-
-
Kollman, P.1
-
7
-
-
0033576720
-
Predicting relative binding free energies of tacrine-huperzine A hybrids as inhibitors of acetylcholinesterase
-
Barril, X.; Orozco, M.; Luque, F. J. Predicting relative binding free energies of tacrine-huperzine A hybrids as inhibitors of acetylcholinesterase. J. Med. Chem. 1999, 42, 5110-5119.
-
(1999)
J. Med. Chem.
, vol.42
, pp. 5110-5119
-
-
Barril, X.1
Orozco, M.2
Luque, F.J.3
-
8
-
-
0031637651
-
Ligand binding affinity prediction by linear interaction energy methods
-
Hansson, T.; Marelius, J.; Aqvist, J. Ligand binding affinity prediction by linear interaction energy methods. J. Comput. Aided Mol. Des. 1998, 12, 27-35.
-
(1998)
J. Comput. Aided Mol. Des.
, vol.12
, pp. 27-35
-
-
Hansson, T.1
Marelius, J.2
Aqvist, J.3
-
9
-
-
0031469618
-
Assessment of solvation effects on calculated binding affinity differences: Trypsin inhibition by flavonoids as a model system for congeneric series
-
Checa, A.; Ortiz, A. R.; de Pascual-Teresa, B.; Gago, F. Assessment of solvation effects on calculated binding affinity differences: Trypsin inhibition by flavonoids as a model system for congeneric series. J. Med. Chem. 1997, 40, 4136-4145.
-
(1997)
J. Med. Chem.
, vol.40
, pp. 4136-4145
-
-
Checa, A.1
Ortiz, A.R.2
De Pascual-Teresa, B.3
Gago, F.4
-
10
-
-
0029000922
-
Prediction of drug binding affinities by comparative binding energy analysis
-
Ortiz, A. R.; Pisabarro, M. T.; Gago, F.; Wade, R. C. Prediction of drug binding affinities by comparative binding energy analysis. J. Med. Chem. 1995, 38, 2681-2691.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 2681-2691
-
-
Ortiz, A.R.1
Pisabarro, M.T.2
Gago, F.3
Wade, R.C.4
-
11
-
-
0032510317
-
Comparative binding energy analysis of HIV-1 protease inhibitors: Incorporation of solvent effects and validation as a powerful tool in receptor-based drug design
-
Pérez, C.; Pastor, M.; Ortiz, A. R.; Gago, F. Comparative binding energy analysis of HIV-1 protease inhibitors: Incorporation of solvent effects and validation as a powerful tool in receptor-based drug design. J. Med. Chem. 1998, 41, 836-852.
-
(1998)
J. Med. Chem.
, vol.41
, pp. 836-852
-
-
Pérez, C.1
Pastor, M.2
Ortiz, A.R.3
Gago, F.4
-
12
-
-
0034050042
-
3D-QSAR methods on the basis of ligand-receptor complexes. Application of COMBINE and GRID/GOLPE methodologies to a series of CYP1A2 ligands
-
Lozano, J. J.; Pastor, M.; Cruciani, G.; Gaedt, K.; Centeno, N. B.; Gago, F.; Sanz, F. 3D-QSAR methods on the basis of ligand-receptor complexes. Application of COMBINE and GRID/GOLPE methodologies to a series of CYP1A2 ligands. J. Comput.-Aided Mol. Des. 2000, 14, 341-353.
-
(2000)
J. Comput.-Aided Mol. Des.
, vol.14
, pp. 341-353
-
-
Lozano, J.J.1
Pastor, M.2
Cruciani, G.3
Gaedt, K.4
Centeno, N.B.5
Gago, F.6
Sanz, F.7
-
13
-
-
0035658221
-
Comparative binding energy (COMBINE) analysis of human neutrophil elastase inhibition by pyridone-containing trifluoromethylketones
-
Cuevas, C.; Pastor, M.; Pérez, C.; Gago, F. Comparative binding energy (COMBINE) analysis of human neutrophil elastase inhibition by pyridone-containing trifluoromethylketones. Comb. Chem. High Throughput Screening 2001, 4, 627-642.
-
(2001)
Comb. Chem. High Throughput Screening
, vol.4
, pp. 627-642
-
-
Cuevas, C.1
Pastor, M.2
Pérez, C.3
Gago, F.4
-
14
-
-
0035866695
-
Comparative binding energy (COMBINE) analysis of influenza neuraminidase-inhibitor complexes
-
Wang, T.; Wade, R. C. Comparative binding energy (COMBINE) analysis of influenza neuraminidase-inhibitor complexes. J. Med. Chem. 2091, 44, 961-971.
-
(2091)
J. Med. Chem.
, vol.44
, pp. 961-971
-
-
Wang, T.1
Wade, R.C.2
-
15
-
-
0842304437
-
Virtual screening with flexible docking and COMBINE-based models. Application to a series of factor Xa inhibitors
-
Murcia, M.; Ortiz, A. R. Virtual screening with flexible docking and COMBINE-based models. Application to a series of factor Xa inhibitors. J. Med. Chem. 2004, 47, 805-820.
-
(2004)
J. Med. Chem.
, vol.47
, pp. 805-820
-
-
Murcia, M.1
Ortiz, A.R.2
-
16
-
-
0034069171
-
Nuclear receptor-DNA binding specificity: A COMBINE and Free-Wilson QSAR analysis
-
Tomic, S.; Nilsson, L.; Wade, R. C. Nuclear receptor-DNA binding specificity: A COMBINE and Free-Wilson QSAR analysis. J. Med. Chem. 2000, 43, 1780-1792.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 1780-1792
-
-
Tomic, S.1
Nilsson, L.2
Wade, R.C.3
-
17
-
-
0035979364
-
Comparative Binding Energy (COMBINE) analysis of the substrate specificity of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10
-
Kmuníček, J.; Luengo, S.; Gago, F.; Ramírez Ortiz, A.; Wade, R.; Damborský, J. Comparative Binding Energy (COMBINE) analysis of the substrate specificity of haloalkane dehalogenase from Xanthobacter autotrophicus GJ10. Biochemistry 2001, 40, 8905-8917.
-
(2001)
Biochemistry
, vol.40
, pp. 8905-8917
-
-
Kmuníček, J.1
Luengo, S.2
Gago, F.3
Ramírez Ortiz, A.4
Wade, R.5
Damborský, J.6
-
18
-
-
0242522310
-
Comparative Binding Energy analysis of haloalkane dehalogenase substrates: Modelling of enzyme substrate complexes by molecular docking and quantum mechanical calculations
-
Kmuníček, J.; Boháč, M.; Luengo, S.; Gago, F.; Wade, R. C.; Damborský, J. Comparative Binding Energy analysis of haloalkane dehalogenase substrates: Modelling of enzyme substrate complexes by molecular docking and quantum mechanical calculations. J. Comput.-Aided Mol. Des. 2003, 17, 299-311.
-
(2003)
J. Comput.-Aided Mol. Des.
, vol.17
, pp. 299-311
-
-
Kmuníček, J.1
Boháč, M.2
Luengo, S.3
Gago, F.4
Wade, R.C.5
Damborský, J.6
-
19
-
-
0037315878
-
A critical analysis of new molecular targets and strategies for drug developments in Alzheimer's disease
-
Lahiri, D. K.; Farlow, M. R.; Sambamurti, K.; Greig, N. H.; Giacobini, E.; Schneider, L. S. A critical analysis of new molecular targets and strategies for drug developments in Alzheimer's disease. Curr. Drug Targets. 2003, 4, 97-112.
-
(2003)
Curr. Drug Targets
, vol.4
, pp. 97-112
-
-
Lahiri, D.K.1
Farlow, M.R.2
Sambamurti, K.3
Greig, N.H.4
Giacobini, E.5
Schneider, L.S.6
-
20
-
-
0031587286
-
Acetylcholinesterase promotes the aggregation of amyloid-beta-peptide fragments by forming a complex with the growing fibrils
-
Alvarez, A.; Opazo, C.; Alarcón, R.; Garrido, J.; Inestrosa, N. C. Acetylcholinesterase promotes the aggregation of amyloid-beta-peptide fragments by forming a complex with the growing fibrils. J. Mol. Biol. 1997, 272, 348-361.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 348-361
-
-
Alvarez, A.1
Opazo, C.2
Alarcón, R.3
Garrido, J.4
Inestrosa, N.C.5
-
21
-
-
0035468115
-
Peripheral and dual binding site acetylcholinesterase inhibitors: Implications in treatment of Alzheimer's disease
-
Castro, A.; Martínez, A. Peripheral and dual binding site acetylcholinesterase inhibitors: Implications in treatment of Alzheimer's disease. Mini-Rev. Med. Chem. 2001, 1, 267-272.
-
(2001)
Mini-Rev. Med. Chem.
, vol.1
, pp. 267-272
-
-
Castro, A.1
Martínez, A.2
-
22
-
-
0025778840
-
Atomic structure of acetylcholinesterase from Torpedo californica: A prototypic acetylcholine-binding protein
-
Sussman, J. L.; Harel, M.; Frolow, F.; Oefner, C.; Goldman, A.; Toker, L.; Silman, I. Atomic structure of acetylcholinesterase from Torpedo californica: A prototypic acetylcholine-binding protein. Science 1991, 253, 872-879.
-
(1991)
Science
, vol.253
, pp. 872-879
-
-
Sussman, J.L.1
Harel, M.2
Frolow, F.3
Oefner, C.4
Goldman, A.5
Toker, L.6
Silman, I.7
-
23
-
-
0036480510
-
Rational design of reversible acetylcholinesterase inhibitors
-
Barril, X.; Kalko, S. G.; Orozco, M.; Luque, F. J. Rational design of reversible acetylcholinesterase inhibitors. Mini-Rev. Med. Chem. 2002, 2, 27-36.
-
(2002)
Mini-Rev. Med. Chem.
, vol.2
, pp. 27-36
-
-
Barril, X.1
Kalko, S.G.2
Orozco, M.3
Luque, F.J.4
-
24
-
-
0026774930
-
The synthesis and in vitro acetylcholinesterase and butyrylcholinesterase inhibitory activity of tacrine (Cognex) derivatives
-
Gregor, V. E.; Emmerling, M. R.; Lee, C.; Moore, C. J. The synthesis and in vitro acetylcholinesterase and butyrylcholinesterase inhibitory activity of tacrine (Cognex) derivatives. Bioorg. Med. Chem. Lett. 1992, 2, 861-864.
-
(1992)
Bioorg. Med. Chem. Lett.
, vol.2
, pp. 861-864
-
-
Gregor, V.E.1
Emmerling, M.R.2
Lee, C.3
Moore, C.J.4
-
25
-
-
0034036419
-
SAR of 9-amino-1,2,3,4-tetrahydroacridine-based acetylcholinesterase inhibitors: Synthesis, enzyme inhibitory activity, QSAR, and structure-based CoMFA of tacrine analogues
-
Recanatini, M.; Cavalli, A.; Belluti, F.; Piazzi, L.; Rampa, A.; Bisi, A.; Gobbi, S.; Valenti, P.; Andrisano, V.; Bartolini, M.; Cavrini, V. SAR of 9-amino-1,2,3,4-tetrahydroacridine-based acetylcholinesterase inhibitors: Synthesis, enzyme inhibitory activity, QSAR, and structure-based CoMFA of tacrine analogues. J. Med. Chem. 2000, 43, 2007-2018.
-
(2000)
J. Med. Chem.
, vol.43
, pp. 2007-2018
-
-
Recanatini, M.1
Cavalli, A.2
Belluti, F.3
Piazzi, L.4
Rampa, A.5
Bisi, A.6
Gobbi, S.7
Valenti, P.8
Andrisano, V.9
Bartolini, M.10
Cavrini, V.11
-
26
-
-
13044253491
-
Synthesis, in vitro pharmacology, and molecular modeling of very potent tacrine-huperzine A hybrids as acetylcholinesterase inhibitors of potential interest for the treatment of Alzheimer's disease
-
Camps, P.; El Achab, R.; Morral, J.; Muñoz-Torrero, D.; Badia, A.; Baños, J. E.; Vivas, N. M.; Barril, X.; Orozco, M.; Luque, F. J. Synthesis, in vitro pharmacology, and molecular modeling of very potent tacrine-huperzine A hybrids as acetylcholinesterase inhibitors of potential interest for the treatment of Alzheimer's disease. J. Med. Chem. 1999, 42, 3227-3242.
-
(1999)
J. Med. Chem.
, vol.42
, pp. 3227-3242
-
-
Camps, P.1
El Achab, R.2
Morral, J.3
Muñoz-Torrero, D.4
Badia, A.5
Baños, J.E.6
Vivas, N.M.7
Barril, X.8
Orozco, M.9
Luque, F.J.10
-
27
-
-
0034736034
-
New tacrine-huperzine A hybrids (huprines): Highly potent tight-binding acetylcholinesterase inhibitors of interest for the treatment of Alzheimer's disease
-
Camps, P.; El Achab, R.; Morral, J.; Muñoz-Torrero, D.; Badia, A.; Baños, J. E.; Vivas, N. M.; Barril, X.; Orozco, M.; Luque, F. J. New tacrine-huperzine A hybrids (huprines): Highly potent tight-binding acetylcholinesterase inhibitors of interest for the treatment of Alzheimer's disease. J. Med. Chem. 2009, 43, 4657-4666.
-
(2009)
J. Med. Chem.
, vol.43
, pp. 4657-4666
-
-
Camps, P.1
El Achab, R.2
Morral, J.3
Muñoz-Torrero, D.4
Badia, A.5
Baños, J.E.6
Vivas, N.M.7
Barril, X.8
Orozco, M.9
Luque, F.J.10
-
28
-
-
0029871519
-
Acetylcholinesterase inhibition by fused dihydroquinazoline compounds
-
Jaén, J. C.; Gregor, V. E.; Lee, C.; Davis, R.; Emmerling, M. Acetylcholinesterase inhibition by fused dihydroquinazoline compounds. Bioorg. Med. Chem. Lett. 1996, 6, 737-742.
-
(1996)
Bioorg. Med. Chem. Lett.
, vol.6
, pp. 737-742
-
-
Jaén, J.C.1
Gregor, V.E.2
Lee, C.3
Davis, R.4
Emmerling, M.5
-
29
-
-
0025987039
-
a of THA
-
a of THA. Bioorg. Med. Chem. Lett. 1991, 1, 411-414.
-
(1991)
Bioorg. Med. Chem. Lett.
, vol.1
, pp. 411-414
-
-
Desai, M.1
Thadeio, P.F.2
Lipinski, C.A.3
Liston, D.R.4
Spencer, R.W.5
Williams, I.H.6
-
30
-
-
0027368530
-
Quaternary ligand binding to aromatic residues in the active-site gorge of acetylcholinesterase
-
Harel, M.; Schalk, I.; Ehret-Sabatier, L.; Bouet, F.; Coeldner, M.; Hirth, C.; Axelsen, P. H.; Silman, I.; Sussman, J. L. Quaternary ligand binding to aromatic residues in the active-site gorge of acetylcholinesterase. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 9031-9035.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 9031-9035
-
-
Harel, M.1
Schalk, I.2
Ehret-Sabatier, L.3
Bouet, F.4
Coeldner, M.5
Hirth, C.6
Axelsen, P.H.7
Silman, I.8
Sussman, J.L.9
-
31
-
-
0037022789
-
3D structure of Torpedo californica acetylcholinesterase complexed with huprine X at 2.1 Å: Kinetic and molecular dynamics correlates
-
Dvir, H.; Wong, D. M.; Harel, M.; Barril, X.; Orozco, M.; Luque, F. J.; Muñoz Torrero, D.; Camps, P.; Rosenberry, T. L.; Silman, I.; Sussan, J. L. 3D structure of Torpedo californica acetylcholinesterase complexed with huprine X at 2.1 Å: Kinetic and molecular dynamics correlates. Biochemistry 2002, 41, 2970-2981.
-
(2002)
Biochemistry
, vol.41
, pp. 2970-2981
-
-
Dvir, H.1
Wong, D.M.2
Harel, M.3
Barril, X.4
Orozco, M.5
Luque, F.J.6
Muñoz Torrero, D.7
Camps, P.8
Rosenberry, T.L.9
Silman, I.10
Sussan, J.L.11
-
32
-
-
0030046143
-
Binding of tacrine and 6-chlorotacrine by acetylcholinesterase
-
Wlodek, S. T.; Antosiewicz, J.; McCammon, J. A.; Straatsma, T. P.; Wilson, M. K.; Briggs, M. J.; Humblet, C.; Sussman, J. L. Binding of tacrine and 6-chlorotacrine by acetylcholinesterase. Biopolymers 1996, 38, 109-117.
-
(1996)
Biopolymers
, vol.38
, pp. 109-117
-
-
Wlodek, S.T.1
Antosiewicz, J.2
McCammon, J.A.3
Straatsma, T.P.4
Wilson, M.K.5
Briggs, M.J.6
Humblet, C.7
Sussman, J.L.8
-
33
-
-
0023835793
-
Differentiation and distribution of acetylcholinesterase molecular forms in the mouse cochlea
-
Emmerling, M. R.; Sobkowicz, H. M. Differentiation and distribution of acetylcholinesterase molecular forms in the mouse cochlea. Hearing Res. 1988, 32, 137-145.
-
(1988)
Hearing Res.
, vol.32
, pp. 137-145
-
-
Emmerling, M.R.1
Sobkowicz, H.M.2
-
34
-
-
33644811612
-
A new and rapid colorimetric determination of acetylcholinesterase activity
-
Ellman, G. L.; Courtney, K. D.; Andres, B., Jr.; Featherstone, R. M. A new and rapid colorimetric determination of acetylcholinesterase activity. Biochem. Pharmacol. 1961, 7, 88-95.
-
(1961)
Biochem. Pharmacol.
, vol.7
, pp. 88-95
-
-
Ellman, G.L.1
Courtney, K.D.2
Andres Jr., B.3
Featherstone, R.M.4
-
35
-
-
12144290584
-
Chemometrical identification of mutations in HIV-1 reverse transcriptase conferring resistance or enhanced sensitivity to arylsulfonylbenzonitriles
-
Rodríguez-Barrios, F.; Gago, F. Chemometrical identification of mutations in HIV-1 reverse transcriptase conferring resistance or enhanced sensitivity to arylsulfonylbenzonitriles. J. Am. Chem. Soc. 2004, 126, 2718-2719.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 2718-2719
-
-
Rodríguez-Barrios, F.1
Gago, F.2
-
36
-
-
0026794595
-
Expression of recombinant acetylcholinesterase in a baculovirus system: Kinetic properties of glutamate 199 mutants
-
Radic, Z.; Gibney, G.; Kawamoto, S.; MacPhee-Quigley, K.; Bongiorno, C.; Taylor, P. Expression of recombinant acetylcholinesterase in a baculovirus system: Kinetic properties of glutamate 199 mutants. Biochemistry 1992, 31, 9760-9767.
-
(1992)
Biochemistry
, vol.31
, pp. 9760-9767
-
-
Radic, Z.1
Gibney, G.2
Kawamoto, S.3
MacPhee-Quigley, K.4
Bongiorno, C.5
Taylor, P.6
-
37
-
-
0030755235
-
On the mechanism of action of acetylcholinesterase: The electrostatically induced acceleration of the catalytic acylation step
-
Wlodek, S. T.; Antosiewicz, J.; Briggs, J. M. On the mechanism of action of acetylcholinesterase: The electrostatically induced acceleration of the catalytic acylation step. J. Am. Chem. Soc. 1997, 119, 8159-8165.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 8159-8165
-
-
Wlodek, S.T.1
Antosiewicz, J.2
Briggs, J.M.3
-
38
-
-
0033610449
-
Reaction products of acetylcholinesterase and VX reveal a mobile histidine in the catalytic triad
-
Millard, C. B.; Koellner, G.; Ordentlich, A.; Shafferman, A.; Silman, I.; Sussman, J. L. Reaction products of acetylcholinesterase and VX reveal a mobile histidine in the catalytic triad. J. Am. Chem. Soc. 1999, 121, 9883-9884.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9883-9884
-
-
Millard, C.B.1
Koellner, G.2
Ordentlich, A.3
Shafferman, A.4
Silman, I.5
Sussman, J.L.6
-
39
-
-
0035254937
-
Three-dimensional structure of a complex of galanthamine (Nivalin) with acetylcholinesterase from Torpedo californica: Implications for the design of new anti-Alzheimer drugs
-
Bartolucci, C.; Perola E.; Pilger, C.; Fels, G.; Lamba, D. Three-dimensional structure of a complex of galanthamine (Nivalin) with acetylcholinesterase from Torpedo californica: Implications for the design of new anti-Alzheimer drugs. Proteins 2001, 42, 182-191.
-
(2001)
Proteins
, vol.42
, pp. 182-191
-
-
Bartolucci, C.1
Perola, E.2
Pilger, C.3
Fels, G.4
Lamba, D.5
-
40
-
-
0031015343
-
Structure of acetylcholinesterase complexed with the nootropic alkaloyd, (-)-huperzine A
-
Raves, M. L.; Harel, M.; Pang, Y.-P.; Silman, I.; Kozikowski, A. P.; Sussman, J. L. Structure of acetylcholinesterase complexed with the nootropic alkaloyd, (-)-huperzine A. Nature Struct. Biol. 1997, 4, 57-63.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 57-63
-
-
Raves, M.L.1
Harel, M.2
Pang, Y.-P.3
Silman, I.4
Kozikowski, A.P.5
Sussman, J.L.6
-
41
-
-
0037015151
-
X-ray structures of Torpedo californica acetylcholinesterase complexed with (+)-huperzine A and (-)-huperzine B: Structural evidence for an active site rearrangement
-
Dvir, H.; Jiang, H. L.; Wong, D. M.; Harel, M.; Chetrit, M.; He, X. C.; Jin, G. Y.; Yu, G. L.; Tang, X. C.; Silman, I.; Bai, D. L.; Sussman, J. L. X-ray structures of Torpedo californica acetylcholinesterase complexed with (+)-huperzine A and (-)-huperzine B: Structural evidence for an active site rearrangement. Biochemistry 2002, 41, 10810-10818.
-
(2002)
Biochemistry
, vol.41
, pp. 10810-10818
-
-
Dvir, H.1
Jiang, H.L.2
Wong, D.M.3
Harel, M.4
Chetrit, M.5
He, X.C.6
Jin, G.Y.7
Yu, G.L.8
Tang, X.C.9
Silman, I.10
Bai, D.L.11
Sussman, J.L.12
-
42
-
-
0037438531
-
Acetylcholinesterase complexed with bivalent ligands related to huperzine A: Experimental evidence for species-dependent protein-ligand complementarity
-
Wong, D. M.; Greenblatt, H. M.; Dvir, H.; Carlier, P. R.; Han, Y.-F.; Pang, Y.-P.; Silman, I.; Sussman, J. L. Acetylcholinesterase complexed with bivalent ligands related to huperzine A: Experimental evidence for species-dependent protein-ligand complementarity. J. Am. Chem. Soc. 2003, 125, 363-373.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 363-373
-
-
Wong, D.M.1
Greenblatt, H.M.2
Dvir, H.3
Carlier, P.R.4
Han, Y.-F.5
Pang, Y.-P.6
Silman, I.7
Sussman, J.L.8
-
43
-
-
0003834096
-
-
Molecular Simulations Inc., 9685 Scranton Road, San Diego, CA 92121-2777
-
Insight II, version 98.0, 1998; Molecular Simulations Inc., 9685 Scranton Road, San Diego, CA 92121-2777.
-
(1998)
Insight II, Version 98.0
-
-
-
44
-
-
33748545144
-
The influence of polarization functions on molecular orbital hydrogenation energies
-
Hariharan, P. C.; Pople, J. A. The influence of polarization functions on molecular orbital hydrogenation energies. Theor. Chim. Acta 1973, 28, 213-219.
-
(1973)
Theor. Chim. Acta
, vol.28
, pp. 213-219
-
-
Hariharan, P.C.1
Pople, J.A.2
-
45
-
-
0004133516
-
-
Gaussian, Inc.; Pittsburgh, PA
-
Frisch, M. J.; Trucks; G. W., Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, Jr., J. A.; Stratmann; R. E., Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Salvador, P.; Dannenberg, J. J.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Baboul, A. G.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Andres, J. L.; Gonzalez, C.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian 98, revision A.11.2; Gaussian, Inc.; Pittsburgh, PA, 2001.
-
(2001)
Gaussian 98, Revision A.11.2
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery Jr., J.A.8
Stratmann, R.E.9
Burant, J.C.10
Dapprich, S.11
Millam, J.M.12
Daniels, A.D.13
Kudin, K.N.14
Strain, M.C.15
Farkas, O.16
Tomasi, J.17
Barone, V.18
Cossi, M.19
Cammi, R.20
Mennucci, B.21
Pomelli, C.22
Adamo, C.23
Clifford, S.24
Ochterski, J.25
Petersson, G.A.26
Ayala, P.Y.27
Cui, Q.28
Morokuma, K.29
Salvador, P.30
Dannenberg, J.J.31
Malick, D.K.32
Rabuck, A.D.33
Raghavachari, K.34
Foresman, J.B.35
Cioslowski, J.36
Ortiz, J.V.37
Baboul, A.G.38
Stefanov, B.B.39
Liu, G.40
Liashenko, A.41
Piskorz, P.42
Komaromi, I.43
Gomperts, R.44
Martin, R.L.45
Fox, D.J.46
Keith, T.47
Al-Laham, M.A.48
Peng, C.Y.49
Nanayakkara, A.50
Challacombe, M.51
Gill, P.M.W.52
Johnson, B.53
Chen, W.54
Wong, M.W.55
Andres, J.L.56
Gonzalez, C.57
Head-Gordon, M.58
Replogle, E.S.59
Pople, J.A.60
more..
-
46
-
-
0003827997
-
-
Williams and Wilkins: Media, PA
-
Foye, W. O.; Lemke, T. L.; Williams, D. A. Principles of Medicinal Chemistry, 4th ed.; Williams and Wilkins: Media, PA, 1995.
-
(1995)
Principles of Medicinal Chemistry, 4th Ed.
-
-
Foye, W.O.1
Lemke, T.L.2
Williams, D.A.3
-
47
-
-
3042524904
-
A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model
-
Bayly, C. I.; Cieplak, P.; Cornell, W. D.; Kollman, P. A. A well-behaved electrostatic potential based method using charge restraints for deriving atomic charges: The RESP model. J. Phys. Chem. 1993, 97, 10269-10280.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 10269-10280
-
-
Bayly, C.I.1
Cieplak, P.2
Cornell, W.D.3
Kollman, P.A.4
-
48
-
-
0029011701
-
Second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell, W. D.; Cieplak, P.; Bayly, C. I.; Gould, I. R.; Merz, K.; Kollman, P. A. Second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J. Am. Chem. Soc. 1995, 117, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.5
Kollman, P.A.6
-
49
-
-
12944255678
-
Structures of recombinant native and E202Q mutant human acetylcholinesterase complexed with the snake-venom toxin fasciculin-II
-
Kryger, G.; Harel, M.; Giles, K.; Toker, L.; Velan, B.; Lazar, A.; Kronman, C.; Barak, D.; Ariel, N.; Shafferman, A.; Silman, I.; Sussman, J. L. Structures of recombinant native and E202Q mutant human acetylcholinesterase complexed with the snake-venom toxin fasciculin-II. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2000, 56, 1385-1394.
-
(2000)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.56
, pp. 1385-1394
-
-
Kryger, G.1
Harel, M.2
Giles, K.3
Toker, L.4
Velan, B.5
Lazar, A.6
Kronman, C.7
Barak, D.8
Ariel, N.9
Shafferman, A.10
Silman, I.11
Sussman, J.L.12
-
50
-
-
0037413712
-
Structural insights into ligand interactions at the acetylcholinesterase peripheral anionic site
-
Bourne, Y.; Taylor, P.; Radic, Z.; Marchot, P. Structural insights into ligand interactions at the acetylcholinesterase peripheral anionic site. EMBO J. 2003, 22, 1-12.
-
(2003)
EMBO J.
, vol.22
, pp. 1-12
-
-
Bourne, Y.1
Taylor, P.2
Radic, Z.3
Marchot, P.4
-
51
-
-
0345616432
-
Design, synthesis, and pharmacological profile of novel fused pyrazolo[4,3-d]pyridine and pyrazolo[3,4-b][1,8]naphthyridine isosteres: A new class of potent and selective acetylcholinesterase inhibitors
-
Barreiro, E. J.; Camara, C. A.; Verli, H.; Brazil-Mas, L.; Castro, N. G.; Cintra, W. M.; Aracava, Y.; Rodrigues, C. R.; Fraga, C. A. M. Design, synthesis, and pharmacological profile of novel fused pyrazolo[4,3-d]pyridine and pyrazolo[3,4-b][1,8]naphthyridine isosteres: A new class of potent and selective acetylcholinesterase inhibitors. J. Med. Chem. 2003, 46, 1144-1152.
-
(2003)
J. Med. Chem.
, vol.46
, pp. 1144-1152
-
-
Barreiro, E.J.1
Camara, C.A.2
Verli, H.3
Brazil-Mas, L.4
Castro, N.G.5
Cintra, W.M.6
Aracava, Y.7
Rodrigues, C.R.8
Fraga, C.A.M.9
-
52
-
-
0035899187
-
Design, synthesis, and structure-activity relationships of a series of 3-[2-(1-benzylpiperidin-4-yl)ethylamino]pyridazine derivatives as acetylcholinesterase inhibitors
-
Contreras, J. M.; Parrot, I.; Sippl, W.; Rival, Y. M.; Wermuth, C. G. Design, synthesis, and structure-activity relationships of a series of 3-[2-(1-benzylpiperidin-4-yl)ethylamino]pyridazine derivatives as acetylcholinesterase inhibitors. J. Med. Chem. 2001, 44, 2707-2718.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 2707-2718
-
-
Contreras, J.M.1
Parrot, I.2
Sippl, W.3
Rival, Y.M.4
Wermuth, C.G.5
-
53
-
-
0037435051
-
Structure-activity relationships of acetylcholinesterase noncovalent inhibitors based on a polyamine backbone. 2. Role of the substituents on the phenyl ring and nitrogen atoms of caproactime
-
see also ref 10 herein
-
Tumiatti, V., Rosini M., Bartolini, M.; Cavalli, A.; Marucci, G.; Andrisano V.; Angeli, P.; Banzi, R.; Minarini, A.; Recanatini, M.; Melchiorre, C. Structure-activity relationships of acetylcholinesterase noncovalent inhibitors based on a polyamine backbone. 2. Role of the substituents on the phenyl ring and nitrogen atoms of caproactime. J. Med. Chem. 2003, 46, 954-966 (see also ref 10 herein).
-
(2003)
J. Med. Chem.
, vol.46
, pp. 954-966
-
-
Tumiatti, V.1
Rosini, M.2
Bartolini, M.3
Cavalli, A.4
Marucci, G.5
Andrisano, V.6
Angeli, P.7
Banzi, R.8
Minarini, A.9
Recanatini, M.10
Melchiorre, C.11
-
54
-
-
0033103478
-
Structure of acetylcholinesterase complexed with E2020 (Aricept): Implications for the design of new anti-Alzheimer drugs
-
Kryger, G.; Silman, I.; Sussman, J. L. Structure of acetylcholinesterase complexed with E2020 (Aricept): Implications for the design of new anti-Alzheimer drugs. Structure 1999, 7, 297-307.
-
(1999)
Structure
, vol.7
, pp. 297-307
-
-
Kryger, G.1
Silman, I.2
Sussman, J.L.3
-
55
-
-
0037413712
-
Structural insights into ligand interactions at the acetylcholinesterase peripheral anionic site
-
Bourne, Y.; Taylor, P.; Radic, Z.; Marchot, P. Structural insights into ligand interactions at the acetylcholinesterase peripheral anionic site. EMBO J. 2003, 22, 1-12.
-
(2003)
EMBO J.
, vol.22
, pp. 1-12
-
-
Bourne, Y.1
Taylor, P.2
Radic, Z.3
Marchot, P.4
-
56
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
57
-
-
1542265128
-
-
Multivariate Infometric Analysis, S.r.l. Perugia, Italy
-
2 version 4.5, 2000, Multivariate Infometric Analysis, S.r.l. Perugia, Italy.
-
(2000)
2 Version 4.5
-
-
-
58
-
-
4143087542
-
-
note
-
For complexes with t1 and dihydroquinazolines: WAT 589 and WAT 607. For complexes with tacrines (with the exception of t1): WAT 590 and WAT 607. For complexes with huprines: WAT 848 and WAT 891.
-
-
-
-
59
-
-
84986486656
-
A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzmann equation
-
Nicholls, A.; Honig, B. A rapid finite difference algorithm, utilizing successive over-relaxation to solve the Poisson-Boltzmann equation. J. Comput. Chem. 1991, 12, 435-445.
-
(1991)
J. Comput. Chem.
, vol.12
, pp. 435-445
-
-
Nicholls, A.1
Honig, B.2
-
60
-
-
0035821586
-
Identification of a putative binding site for [2′,5′-bis-O- (tert-butyldimethylsilyl)-β-D-ribofuranosyl]-3′-spiro-5″- (4″-amino-1″,2″-oxathiole-2″,2″-dioxide) thymine (TSAO) derivatives at the p51-p66 interface of HIV-1 reverse transcriptase
-
Rodriguez-Barrios, F.; Pérez, C.; Lobatón, E.; Velázquez, S.; Chamorro, C.; San-Félix, A.; Pérez- Pérez, M. J.; Camarasa, M. J.; Pelemans, H.; Balzarini, J.; Gago, F. Identification of a putative binding site for [2′,5′-bis-O-(tert- butyldimethylsilyl)-β-D-ribofuranosyl]-3′-spiro-5″-(4″- amino-1″,2″-oxathiole-2″,2″-dioxide) thymine (TSAO) derivatives at the p51-p66 interface of HIV-1 reverse transcriptase. J. Med. Chem. 2001, 44, 1853-1865.
-
(2001)
J. Med. Chem.
, vol.44
, pp. 1853-1865
-
-
Rodriguez-Barrios, F.1
Pérez, C.2
Lobatón, E.3
Velázquez, S.4
Chamorro, C.5
San-Félix, A.6
Pérez-Pérez, M.J.7
Camarasa, M.J.8
Pelemans, H.9
Balzarini, J.10
Gago, F.11
-
61
-
-
84988087911
-
Calculating the electrostatic potential of molecules in solution: Method and error assessment
-
Gilson, M. K.; Sharp, K. A.; Honig, B. H. Calculating the electrostatic potential of molecules in solution: Method and error assessment. J. Comput. Chem. 1987, 9, 327-335.
-
(1987)
J. Comput. Chem.
, vol.9
, pp. 327-335
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.H.3
|