-
1
-
-
0026351939
-
Theoretical Calculations of Relative Affinities of Binding
-
Straatsma, T. P.; McCammon, J. A. Theoretical Calculations of Relative Affinities of Binding. Methods Enzymol. 1991, 202, 497-511.
-
(1991)
Methods Enzymol.
, vol.202
, pp. 497-511
-
-
Straatsma, T.P.1
McCammon, J.A.2
-
2
-
-
0028861437
-
Elusive Affinities
-
Janin, J. Elusive Affinities. Proteins 1995, 21, 30-39.
-
(1995)
Proteins
, vol.21
, pp. 30-39
-
-
Janin, J.1
-
3
-
-
0029623184
-
Computational Methods to Predict Binding Free Energy in Ligand-Receptor Complexes
-
Ajay; Murcko, M. A. Computational Methods to Predict Binding Free Energy in Ligand-Receptor Complexes. J. Med. Chem. 1995, 38, 4953-4967.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 4953-4967
-
-
Ajay1
Murcko, M.A.2
-
4
-
-
0030474049
-
What Can We Learn from Molecular Recognition in Protein-Ligand Complexes for the Design of New Drugs?
-
Böhm, H.-J.; Klebe, G. What Can We Learn from Molecular Recognition in Protein-Ligand Complexes for the Design of New Drugs? Angew. Chem., Int. Ed. Engl. 1996, 35, 2588-2614.
-
(1996)
Angew. Chem., Int. Ed. Engl.
, vol.35
, pp. 2588-2614
-
-
Böhm, H.-J.1
Klebe, G.2
-
6
-
-
7044239742
-
Free Energy Calculations: Applications to Chemical and Biochemical Phenomena
-
(b) Kollman, P. Free Energy Calculations: Applications to Chemical and Biochemical Phenomena. Chem. Rev. (Washington, D.C.) 1993, 93, 2395-2417.
-
(1993)
Chem. Rev. (Washington, D.C.)
, vol.93
, pp. 2395-2417
-
-
Kollman, P.1
-
7
-
-
0024553083
-
The Binding of Benzenesulfonamides to Carbonic Anhydrase Enzyme. A Molecular Mechanics Study and Quantitative Structure-Activity Relationships
-
Menziani, M. C.; De Benedetti, P. G.; Gago, F.; Richards, W. G. The Binding of Benzenesulfonamides to Carbonic Anhydrase Enzyme. A Molecular Mechanics Study and Quantitative Structure-Activity Relationships J. Med. Chem. 1989, 32, 951-956.
-
(1989)
J. Med. Chem.
, vol.32
, pp. 951-956
-
-
Menziani, M.C.1
De Benedetti, P.G.2
Gago, F.3
Richards, W.G.4
-
8
-
-
0001452822
-
Correlation of Binding Affinities with Non-Bonded Interaction Energies of Thrombin-Inhibitor Complexes
-
Grootenhuis, P. D. J.; van Galen, P. J. M. Correlation of Binding Affinities with Non-Bonded Interaction Energies of Thrombin-Inhibitor Complexes. Acta Cryst. 1995, D51, 560-566.
-
(1995)
Acta Cryst.
, vol.D51
, pp. 560-566
-
-
Grootenhuis, P.D.J.1
Van Galen, P.J.M.2
-
9
-
-
0029063951
-
A Priori Prediction of Activity for HIV-1 Protease Inhibitors Employing Energy Minimization in the Active Site
-
Holloway, M. K.; Wai, J. M.; Halgren, T. A.; Fitzgerald, P. M. D.; Vacca, J. P.; Dorsey, B. D.; Levin, R. B.; Thompson, W. J.; Chen, L. J.; deSolms, S. J.; Gaffin, N.; Ghosh, A. K.; Giuliani, E. A.; Graham, S. L.; Guare, J. P.; Hungate, R. W.; Lyle, T. A.; Sanders, W. M.; Tucker, T. J.; Wiggins, M.; Wiscount, C. M.; Woltersdorf, O. W.; Young, S. D.; Darke, P. L.; Zugay, J. A. A Priori Prediction of Activity for HIV-1 Protease Inhibitors Employing Energy Minimization in the Active Site. J. Med. Chem. 1995, 38, 305-317.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 305-317
-
-
Holloway, M.K.1
Wai, J.M.2
Halgren, T.A.3
Fitzgerald, P.M.D.4
Vacca, J.P.5
Dorsey, B.D.6
Levin, R.B.7
Thompson, W.J.8
Chen, L.J.9
Desolms, S.J.10
Gaffin, N.11
Ghosh, A.K.12
Giuliani, E.A.13
Graham, S.L.14
Guare, J.P.15
Hungate, R.W.16
Lyle, T.A.17
Sanders, W.M.18
Tucker, T.J.19
Wiggins, M.20
Wiscount, C.M.21
Woltersdorf, O.W.22
Young, S.D.23
Darke, P.L.24
Zugay, J.A.25
more..
-
10
-
-
0346029042
-
Calculation of Relative Binding Affinities of Purine Nucleoside Phosphorylase Inhibitors
-
Carson, M.; Yang, Z.; Babu, Y. S.; Montgomery, J. A. Calculation of Relative Binding Affinities of Purine Nucleoside Phosphorylase Inhibitors. Acta Crystallogr. 1995, D51, 536-540.
-
(1995)
Acta Crystallogr.
, vol.D51
, pp. 536-540
-
-
Carson, M.1
Yang, Z.2
Babu, Y.S.3
Montgomery, J.A.4
-
11
-
-
0029000922
-
Prediction of Drug Binding Affinities by Comparative Binding Energy Analysis
-
Ortiz, A. R.; Pisabarro, M. T.; Gago, F.; Wade, R. C. Prediction of Drug Binding Affinities by Comparative Binding Energy Analysis. J. Med. Chem. 1995, 38, 2681-2691.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 2681-2691
-
-
Ortiz, A.R.1
Pisabarro, M.T.2
Gago, F.3
Wade, R.C.4
-
13
-
-
12044254701
-
A Direct Measure of the Contribution of Solvent Reorganization to the Enthalpy of Ligand Binding
-
Chervenak, M. C.; Toone, E. J. A Direct Measure of the Contribution of Solvent Reorganization to the Enthalpy of Ligand Binding. J. Am. Chem. Soc. 1994, 116, 10533-10539.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 10533-10539
-
-
Chervenak, M.C.1
Toone, E.J.2
-
14
-
-
0029062909
-
Ligand-Protein Docking and Rational Drug Design
-
Lybrand, T. P. Ligand-Protein Docking and Rational Drug Design. Curr. Opin. Struct. Biol. 1995, 5, 224-228.
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 224-228
-
-
Lybrand, T.P.1
-
15
-
-
0017324044
-
Serine Proteases: Structure and Mechanism of Catalysis
-
Kraut, J. Serine Proteases: Structure and Mechanism of Catalysis. Annu. Rev. Biochem. 1977, 46, 331-358.
-
(1977)
Annu. Rev. Biochem.
, vol.46
, pp. 331-358
-
-
Kraut, J.1
-
16
-
-
0016796849
-
Refined Crystal Structure of Bovine Beta-Trypsin at 1.8 ÅResolution. II. Crystallographic Refinement, Calcium Binding Site, Benzamidine Binding Site and Active Site at pH 7.0
-
(a) Bode, W.; Schwager, P. Refined Crystal Structure of Bovine Beta-Trypsin at 1.8 ÅResolution. II. Crystallographic Refinement, Calcium Binding Site, Benzamidine Binding Site and Active Site at pH 7.0. J. Mol. Biol. 1975, 98, 693-717.
-
(1975)
J. Mol. Biol.
, vol.98
, pp. 693-717
-
-
Bode, W.1
Schwager, P.2
-
17
-
-
0020806688
-
The X-ray Crystal Structure Analysis of the Refined Complex formed by Bovine Trypsin and p-Amidinophenylpyruvate at 1.4 ÅResolution
-
(b) Walter, J.; Bode, W. The X-ray Crystal Structure Analysis of the Refined Complex formed by Bovine Trypsin and p-Amidinophenylpyruvate at 1.4 ÅResolution. Hoppe-Seyler's Physiol. Chem. 1983, 364, 949-959.
-
(1983)
Hoppe-Seyler's Physiol. Chem.
, vol.364
, pp. 949-959
-
-
Walter, J.1
Bode, W.2
-
18
-
-
84977303841
-
The Geometry of the Reactive Site and the Peptide Groups in Trypsin, Trypsinogen and Its Complexes with Inhibitors
-
(c) Marquart, M.; Walter, J.; Deisenhofer, J.; Bode. W.; Huber, R. The Geometry of the Reactive Site and the Peptide Groups in Trypsin, Trypsinogen and Its Complexes with Inhibitors. Acta Crystallogr. 1983, B39, 480-490.
-
(1983)
Acta Crystallogr.
, vol.B39
, pp. 480-490
-
-
Marquart, M.1
Walter, J.2
Deisenhofer, J.3
Bode, W.4
Huber, R.5
-
19
-
-
0028519286
-
Prediction of New Serine Proteinase Inhibitors
-
Kurinov, I. V.; Harrison, R. W. Prediction of New Serine Proteinase Inhibitors. Nature Struct. Biol. 1994, 1, 735-743.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 735-743
-
-
Kurinov, I.V.1
Harrison, R.W.2
-
20
-
-
0011995117
-
Search for New Non-Peptidic Serine Proteinase Inhibitors of Plant Origin
-
Parellada, J.; Guinea, M. Search for New Non-Peptidic Serine Proteinase Inhibitors of Plant Origin. Pharm. Pharmacol. Lett. 1995, 2, 66-69.
-
(1995)
Pharm. Pharmacol. Lett.
, vol.2
, pp. 66-69
-
-
Parellada, J.1
Guinea, M.2
-
22
-
-
15144340154
-
-
Molecular Graphics Society: York University
-
A preliminary account of this work was presented at the York Meeting on Molecular Interactions, Molecular Graphics Society: York University, 1996.
-
(1996)
York Meeting on Molecular Interactions
-
-
-
23
-
-
10544246488
-
Structure-Based Design of HIV Protease Inhibitors: 5,6-Dihydro-4-hydroxy-2-pyrones as Effective, Nonpeptidic Inhibitors
-
Thaisrivongs, S.; Romero, D. L.; Tommasi, R. A.; Janakiraman, M. N.; Strohbach, J. W.; Turner, S. R.; Biles, C.; Morge, R. R.; Johnson, P. D.; Aristoff, P. A.; Tomich, P. K.; Lynn, J. C.; Horng, M.-M.; Chong, K.-T.; Hinshaw, R. R.; Howe, W. J.; Finzel, B. C.; Watenpaugh, K. D. Structure-Based Design of HIV Protease Inhibitors: 5,6-Dihydro-4-hydroxy-2-pyrones as Effective, Nonpeptidic Inhibitors. J. Med. Chem. 1996, 39, 4630-4642.
-
(1996)
J. Med. Chem.
, vol.39
, pp. 4630-4642
-
-
Thaisrivongs, S.1
Romero, D.L.2
Tommasi, R.A.3
Janakiraman, M.N.4
Strohbach, J.W.5
Turner, S.R.6
Biles, C.7
Morge, R.R.8
Johnson, P.D.9
Aristoff, P.A.10
Tomich, P.K.11
Lynn, J.C.12
Horng, M.-M.13
Chong, K.-T.14
Hinshaw, R.R.15
Howe, W.J.16
Finzel, B.C.17
Watenpaugh, K.D.18
-
24
-
-
0029047744
-
Synthesis and Pharmacological Evaluation of 2′-Hydroxychalcones and Flavones as Inhibitors of Inflammatory Mediators Generation
-
(a) Ballesteros, J. F.; Sanz, M. J.; Ubeda, A.; Miranda, M. A.; Iborra, S.; Payá, M.; Alcaraz, M. J. Synthesis and Pharmacological Evaluation of 2′-Hydroxychalcones and Flavones as Inhibitors of Inflammatory Mediators Generation. J. Med. Chem. 1995, 38, 2794-2797.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 2794-2797
-
-
Ballesteros, J.F.1
Sanz, M.J.2
Ubeda, A.3
Miranda, M.A.4
Iborra, S.5
Payá, M.6
Alcaraz, M.J.7
-
25
-
-
0028846672
-
Synthesis and Biological Evaluation of Substituted Flavones as Gastroprotrective Agents
-
(b) Ares, J. J.; Outt, P. E.; Randall, J. L.; Murray, P. D.; Weisshaar, P. S.; O'Brien, L. M.; Ems, B. L.; Kakodkar, S. V.; Kelm, G. R.; Kershaw, W. C.; Werchowski, K. M.; Parkinson, A. Synthesis and Biological Evaluation of Substituted Flavones as Gastroprotrective Agents. J. Med. Chem. 1995, 38, 4937-4943.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 4937-4943
-
-
Ares, J.J.1
Outt, P.E.2
Randall, J.L.3
Murray, P.D.4
Weisshaar, P.S.5
O'Brien, L.M.6
Ems, B.L.7
Kakodkar, S.V.8
Kelm, G.R.9
Kershaw, W.C.10
Werchowski, K.M.11
Parkinson, A.12
-
26
-
-
0026442109
-
Flavones are Inhibitors of HIV-1 Proteinase
-
(c) Brinkworth, R. I.; Stoermer, M. J.; Fairlie, D. P. Flavones are Inhibitors of HIV-1 Proteinase. Biochem. Biophys. Res. Commun. 1992, 188, 631-637.
-
(1992)
Biochem. Biophys. Res. Commun.
, vol.188
, pp. 631-637
-
-
Brinkworth, R.I.1
Stoermer, M.J.2
Fairlie, D.P.3
-
27
-
-
0028108990
-
Induction of Apoptosis by Quercetin: Involvement of Heat Shock Protein
-
(d) Wei, Y.; Zhao, X.; Kariya, Y.; Fukata, H.; Teshigawara, K.; Uchida, A. Induction of Apoptosis by Quercetin: Involvement of Heat Shock Protein. Cancer Res. 1994, 54, 4952-4957.
-
(1994)
Cancer Res.
, vol.54
, pp. 4952-4957
-
-
Wei, Y.1
Zhao, X.2
Kariya, Y.3
Fukata, H.4
Teshigawara, K.5
Uchida, A.6
-
28
-
-
15144358535
-
The Crystal and Molecular Structure of Quercetin: A Biologically Active and Naturally Occurring Flavonoid
-
Rossi, M.; Rickles, L. F.; Halpin, W. A. The Crystal and Molecular Structure of Quercetin: A Biologically Active and Naturally Occurring Flavonoid. Bioorg. Chem. 1986, 74, 5569.
-
(1986)
Bioorg. Chem.
, vol.74
, pp. 5569
-
-
Rossi, M.1
Rickles, L.F.2
Halpin, W.A.3
-
29
-
-
4243885224
-
Structure of (R, S)-Naringenin
-
Shin, W.; Lah, M. S. Structure of (R, S)-Naringenin. Acta Crystallogr., Sect. C (Cryst. Struct. Commun.) 1986, C42, 626-628.
-
(1986)
Acta Crystallogr., Sect. c (Cryst. Struct. Commun.)
, vol.C42
, pp. 626-628
-
-
Shin, W.1
Lah, M.S.2
-
30
-
-
84942709573
-
Stereochemistry of Silybin. Z
-
Lotter, H.; Wagner, H. Stereochemistry of Silybin. Z. Naturforsch., C: Biosci. 1983, 38, 339-341.
-
(1983)
Naturforsch., C: Biosci.
, vol.38
, pp. 339-341
-
-
Lotter, H.1
Wagner, H.2
-
31
-
-
0001635093
-
The Cambridge Crystallographic Data Centre: Computer-Based Search, Retrieval, Analysis and Display of Information
-
Allen, F. H.; Bellard, S.; Brice, M. D., Cartwright, B. A.; Doubleday: A.; Higgs, H.; Hummelink, T.; Hummelink-Peters, B. G.; Kennard, O.; Motherwell, W. D. S.; Rodgers, J. R.; Watson, D. G. The Cambridge Crystallographic Data Centre: Computer-Based Search, Retrieval, Analysis and Display of Information. Acta Crystallogr. 1979, B35, 2331-2339.
-
(1979)
Acta Crystallogr.
, vol.B35
, pp. 2331-2339
-
-
Allen, F.H.1
Bellard, S.2
Brice, M.D.3
Cartwright, B.A.4
Doubleday, A.5
Higgs, H.6
Hummelink, T.7
Hummelink-Peters, B.G.8
Kennard, O.9
Motherwell, W.D.S.10
Rodgers, J.R.11
Watson, D.G.12
-
32
-
-
0006444064
-
-
Molecular Simulations Inc., 9685 Scranton Road, San Diego, CA 92121-3752
-
Insight II, release 95.0 (1995), Molecular Simulations Inc., 9685 Scranton Road, San Diego, CA 92121-3752.
-
(1995)
Insight II, Release 95.0
-
-
-
33
-
-
0842341771
-
AM1: A New General Purpose Quantum Mechanical Molecular Model
-
Dewar, M. J. S., Zoebisch, E. G., Healy, E. F.; Stewart, J. J. P. AM1: A New General Purpose Quantum Mechanical Molecular Model. J. Am. Chem. Soc. 1985, 107, 3902-3909.
-
(1985)
J. Am. Chem. Soc.
, vol.107
, pp. 3902-3909
-
-
Dewar, M.J.S.1
Zoebisch, E.G.2
Healy, E.F.3
Stewart, J.J.P.4
-
34
-
-
15144342853
-
-
Wavefunction, Inc., 18401 von Karman Avenue, Irvine, CA 92715
-
SPARTAN, version 3.0.1 (1993), Wavefunction, Inc., 18401 von Karman Avenue, Irvine, CA 92715.
-
(1993)
SPARTAN, Version 3.0.1
-
-
-
35
-
-
84988098098
-
Atomic Charges Derived from Electrostatic Potentials: A Detailed Study
-
Chirlian, L. E.; Francl, M. M. Atomic Charges Derived from Electrostatic Potentials: A Detailed Study. J. Comput. Chem. 1987, 8, 894-905.
-
(1987)
J. Comput. Chem.
, vol.8
, pp. 894-905
-
-
Chirlian, L.E.1
Francl, M.M.2
-
36
-
-
84988053694
-
An All Atom Force Field for Simulations of Proteins and Nucleic Acids
-
Weiner, S. J.; Kollman, P. A.; Nguyen, D. T.; Case, D. A. An All Atom Force Field for Simulations of Proteins and Nucleic Acids. J. Comput. Chem. 1986, 7, 230-252.
-
(1986)
J. Comput. Chem.
, vol.7
, pp. 230-252
-
-
Weiner, S.J.1
Kollman, P.A.2
Nguyen, D.T.3
Case, D.A.4
-
37
-
-
84988141603
-
Molecular Mechanics Force-Field Parametrization Procedures
-
Hopfinger, A. J.; Pearlstein, R. A. Molecular Mechanics Force-Field Parametrization Procedures. J. Comput. Chem. 1984, 5, 486-499.
-
(1984)
J. Comput. Chem.
, vol.5
, pp. 486-499
-
-
Hopfinger, A.J.1
Pearlstein, R.A.2
-
38
-
-
0021871375
-
A Computational Procedure for Determining Energetically Favorable Binding Sites on Biologically Important Macromolecules
-
(a) Goodford, P. J. A Computational Procedure for Determining Energetically Favorable Binding Sites on Biologically Important Macromolecules. J. Med. Chem. 1985, 28, 849-857.
-
(1985)
J. Med. Chem.
, vol.28
, pp. 849-857
-
-
Goodford, P.J.1
-
40
-
-
0020491251
-
A Geometric Approach to Macromolecule-Ligand Interactions
-
(a) Kuntz, I. D.; Blaney, J. M.; Oatley, S. J.; Langridge, R.; Ferrin, T. E. A Geometric Approach to Macromolecule-Ligand Interactions. J. Mol. Biol. 1982, 161, 269-288.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
41
-
-
84986518987
-
Molecular Docking Using Shape Descriptors
-
(b) Shoichet, B. K.; Bodian, B.; Kuntz, I. D. Molecular Docking Using Shape Descriptors. J. Comput. Chem. 1992, 13, 380-397.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 380-397
-
-
Shoichet, B.K.1
Bodian, B.2
Kuntz, I.D.3
-
42
-
-
84986432941
-
Automated Docking with GridBased Energy Evaluation
-
(c) Meng, E. C.; Shoichet, B. K.; Kuntz, I. D. Automated Docking with GridBased Energy Evaluation. J. Comput. Chem. 1992, 13, 505-524.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 505-524
-
-
Meng, E.C.1
Shoichet, B.K.2
Kuntz, I.D.3
-
43
-
-
15144353733
-
-
Molecular Design Institute, University of California, San Francisco
-
(d) DOCK, version 3.0, Molecular Design Institute, University of California, San Francisco, 1992.
-
(1992)
DOCK, Version 3.0
-
-
-
44
-
-
0017411710
-
The Protein Data Bank: A Computer-Based Archival File for Macromolecular Structures
-
Bernstein, F. C.; Koetzle, T. F.; Williams, G. J. B.; Meyer, E. F. Jr.; Brice, M. D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. The Protein Data Bank: A Computer-Based Archival File for Macromolecular Structures. J. Mol. Biol. 1977, 112, 535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
45
-
-
0017429069
-
Areas, Volumes, Packing and Protein Structure
-
Richards, F. M. Areas, Volumes, Packing and Protein Structure. Annu. Rev. Biophys. Bioeng. 1977, 6, 151-176.
-
(1977)
Annu. Rev. Biophys. Bioeng.
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
-
46
-
-
0000538815
-
Analytical Molecular Surface Calculation
-
Connolly, M. L. Analytical Molecular Surface Calculation. J. Appl. Crystallogr. 1983, 16, 548-558.
-
(1983)
J. Appl. Crystallogr.
, vol.16
, pp. 548-558
-
-
Connolly, M.L.1
-
48
-
-
0021757436
-
A New Force Field for Molecular Mechanical Simulation of Nucleic Acids and Proteins
-
Weiner, S. J.; Kollman, P. A.; Case, D. A.; Singh, U. C.; Ghio, C; Alagona, C.; Profeta, S.; Weiner, P. A New Force Field for Molecular Mechanical Simulation of Nucleic Acids and Proteins. J. Am. Chem. Soc. 1984, 106, 765-784.
-
(1984)
J. Am. Chem. Soc.
, vol.106
, pp. 765-784
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, C.5
Alagona, C.6
Profeta, S.7
Weiner, P.8
-
49
-
-
0027068111
-
Buried Waters in Homologous Serine Proteases
-
(a) Sreenivasan, U.; Axelsen, P. H. Buried Waters in Homologous Serine Proteases. Biochemistry 1992, 31, 12785-12791.
-
(1992)
Biochemistry
, vol.31
, pp. 12785-12791
-
-
Sreenivasan, U.1
Axelsen, P.H.2
-
50
-
-
0026547998
-
Solvent Structure in Crystals of Trypsin Determined by X-Ray and Neutron Diffraction
-
(b) Finer-Moore, J. S.; Kossiakoff, A. A.; Hurley, J. H.; Earnest, T.; Stroud, R. M. Solvent Structure in Crystals of Trypsin Determined by X-Ray and Neutron Diffraction. Proteins 1992, 12, 203-222.
-
(1992)
Proteins
, vol.12
, pp. 203-222
-
-
Finer-Moore, J.S.1
Kossiakoff, A.A.2
Hurley, J.H.3
Earnest, T.4
Stroud, R.M.5
-
51
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of Simple Potential Functions for Simulating Liquid Water. J. Chem. Phys. 1983, 79, 926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
52
-
-
0029016182
-
Classical Electrostatics in Biology and Chemistry
-
Honig, B.; Nicholls, A. Classical Electrostatics in Biology and Chemistry. Science 1995, 268, 1144-1149.
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
53
-
-
0031012579
-
Enzyme-Inhibitor Association Thermodynamics: Explicit and Continuum Solvent Studies
-
Resat, H.; Marrone, T. J.; McCammon, J. A. Enzyme-Inhibitor Association Thermodynamics: Explicit and Continuum Solvent Studies. Biophys. J. 1997, 72, 522-532.
-
(1997)
Biophys. J.
, vol.72
, pp. 522-532
-
-
Resat, H.1
Marrone, T.J.2
McCammon, J.A.3
-
54
-
-
84986486656
-
A Rapid Finite Difference Algorithm, Utilizing Successive Over-Relaxation to Solve the Poisson-Boltzmann Equation
-
Nicholls, A.; Honig, B. A Rapid Finite Difference Algorithm, Utilizing Successive Over-Relaxation to Solve the Poisson-Boltzmann Equation. J. Comput. Chem. 1991, 12, 435-445.
-
(1991)
J. Comput. Chem.
, vol.12
, pp. 435-445
-
-
Nicholls, A.1
Honig, B.2
-
55
-
-
84988087911
-
Calculating the Electrostatic Potential of Molecules in Solution: Method and Error Assessment
-
Gilson, M. K.; Sharp, K. A.; Honig, B. H. Calculating the Electrostatic Potential of Molecules in Solution: Method and Error Assessment. J. Comput. Chem. 1987, 9, 327-335.
-
(1987)
J. Comput. Chem.
, vol.9
, pp. 327-335
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.H.3
-
56
-
-
0022964504
-
Focusing of Electric Fields in the Active Site of Cu-Zn Superoxide Dismutase: Effects of Ionic Strength and Amino acid Modification
-
Klapper, I.; Hagstrom, R.; Fine, R.; Sharp, K.; Honig, B. Focusing of Electric Fields in the Active Site of Cu-Zn Superoxide Dismutase: Effects of Ionic Strength and Amino acid Modification. Proteins 1986, 1, 47-59.
-
(1986)
Proteins
, vol.1
, pp. 47-59
-
-
Klapper, I.1
Hagstrom, R.2
Fine, R.3
Sharp, K.4
Honig, B.5
-
57
-
-
0010928616
-
Continuum Model Calculations of Solvation Free Energies: Accurate Evaluation of Electrostatic Contributions
-
(a) Mohan, V.; Davis, M. E.; McCammon, J. A.; Pettitt, B. M. Continuum Model Calculations of Solvation Free Energies: Accurate Evaluation of Electrostatic Contributions. J. Phys. Chem. 1992, 96, 6428-6431.
-
(1992)
J. Phys. Chem.
, vol.96
, pp. 6428-6431
-
-
Mohan, V.1
Davis, M.E.2
McCammon, J.A.3
Pettitt, B.M.4
-
58
-
-
0000967631
-
A Comparison of Perturbation Methods and Poisson-Boltzmann Electrostatics Calculations for Estimation of Relative Solvation Free Energies
-
(b) Ewing, T. J. A.; Lybrand, T. P. A Comparison of Perturbation Methods and Poisson-Boltzmann Electrostatics Calculations for Estimation of Relative Solvation Free Energies. J. Phys, Chem. 1994, 98, 1748-1752.
-
(1994)
J. Phys, Chem.
, vol.98
, pp. 1748-1752
-
-
Ewing, T.J.A.1
Lybrand, T.P.2
-
60
-
-
0023779259
-
Calculation of the Total Electrostatic Energy of a Macromolecular System: Solvation Energies, Binding Energies, and Conformational Analysis
-
(a) Gilson, M. K.; Honig, B. Calculation of the Total Electrostatic Energy of a Macromolecular System: Solvation Energies, Binding Energies, and Conformational Analysis. Proteins 1988, 4, 7-18.
-
(1988)
Proteins
, vol.4
, pp. 7-18
-
-
Gilson, M.K.1
Honig, B.2
-
61
-
-
0029019869
-
A Continuum Model for Protein-Protein Interactions: Application to the Docking Problem
-
(b) Jackson, R. M.; Sternberg, M. J. E. A Continuum Model for Protein-Protein Interactions: Application to the Docking Problem. J. Mol. Biol. 1995, 250, 258-275.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 258-275
-
-
Jackson, R.M.1
Sternberg, M.J.E.2
-
62
-
-
0022584255
-
Molecular Aspects of Chemical Carcinogens and Bioflavonoids
-
A. R. Liss, Inc.: New York
-
Glusker, J. P.; Rossi, M. Molecular Aspects of Chemical Carcinogens and Bioflavonoids. In Plant Flavonoids in Biology and Medicine: Biochemical, Pharmacological, and Structure-Activity Relationships; A. R. Liss, Inc.: New York, 1986; pp. 395-410.
-
(1986)
Plant Flavonoids in Biology and Medicine: Biochemical, Pharmacological, and Structure-Activity Relationships
, pp. 395-410
-
-
Glusker, J.P.1
Rossi, M.2
-
63
-
-
0001016942
-
Structure-Based Molecular Design
-
(a) Kuntz, I. D.; Meng, E. C.; Shoichet, B. K. Structure-Based Molecular Design. Acc. Chem. Res 1994, 27, 117-123.
-
(1994)
Acc. Chem. Res
, vol.27
, pp. 117-123
-
-
Kuntz, I.D.1
Meng, E.C.2
Shoichet, B.K.3
-
64
-
-
0028773887
-
Structure-Based Drug Design: Progress, Results and Challenges
-
(b) Verlinde, C. L. M. J.; Hol, W. G. J. Structure-Based Drug Design: Progress, Results and Challenges. Structure 1994, 2, 577-587.
-
(1994)
Structure
, vol.2
, pp. 577-587
-
-
Verlinde, C.L.M.J.1
Hol, W.G.J.2
-
65
-
-
0027308233
-
Three-Dimensional Quantitative Structure-Activity Relationship of Angiotesin-Converting Enzyme and Thermolysin Inhibitors. II. A Comparison of CoMFA Models Incorporating Molecular Orbital Fields and Desolvation Free Energies Based on Active-Analogue and Complementary-Receptor-Field Alignment Rules
-
Waller, C. L.; Marshall, G. R Three-Dimensional Quantitative Structure-Activity Relationship of Angiotesin-Converting Enzyme and Thermolysin Inhibitors. II. A Comparison of CoMFA Models Incorporating Molecular Orbital Fields and Desolvation Free Energies Based on Active-Analogue and Complementary-Receptor-Field Alignment Rules. J. Med. Chem. 1993, 36, 2390-2403.
-
(1993)
J. Med. Chem.
, vol.36
, pp. 2390-2403
-
-
Waller, C.L.1
Marshall, G.R.2
-
66
-
-
0027427161
-
Synthetic Low-Molecular Weight Thrombin Inhibitors: Molecular Design and Pharmacological Profile
-
Tapparelli, C.; Metternich, R.; Ehrhardt, C.; Cook, N. S. Synthetic Low-Molecular Weight Thrombin Inhibitors: Molecular Design and Pharmacological Profile. Trends Pharmacol. Sci. 1993, 14, 366-376.
-
(1993)
Trends Pharmacol. Sci.
, vol.14
, pp. 366-376
-
-
Tapparelli, C.1
Metternich, R.2
Ehrhardt, C.3
Cook, N.S.4
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