-
1
-
-
0028297112
-
Application of the Three-Dimensional Structures of Protein Target Molecules in Structure-Based Drug Design
-
(a) Gréer, J.; Erickson, J. W.; Baldwin, J. J.; Varney, M. D. Application of the Three-Dimensional Structures of Protein Target Molecules in Structure-Based Drug Design. J. Med, Chem. 1994, 37, 1035-1054.
-
(1994)
J. Med, Chem.
, vol.37
, pp. 1035-1054
-
-
Gréer, J.1
Erickson, J.W.2
Baldwin, J.J.3
Varney, M.D.4
-
3
-
-
0031189711
-
Molecular Recognition of Protein-Ligand Complexes: Applications to Drug Design
-
Babine, R. E.; Bender, S. L. Molecular Recognition of Protein-Ligand Complexes: Applications to Drug Design. Chem. Rev. 1997, 97, 1359-1472.
-
(1997)
Chem. Rev.
, vol.97
, pp. 1359-1472
-
-
Babine, R.E.1
Bender, S.L.2
-
4
-
-
0029623184
-
Computational Methods to Predict Binding Free Energy in Ligand-Receptor Complexes
-
Ajay; Murcko, M. A. Computational Methods to Predict Binding Free Energy in Ligand-Receptor Complexes. J. Med. Chem. 1995, 38, 4953-4967.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 4953-4967
-
-
Ajay1
Murcko, M.A.2
-
5
-
-
0031058541
-
The Statistical-Thermodynamic Basis for Computation of Binding Affinities: A Critical Review
-
Gilson, M. K.; Given, J. A.; Bush, B. L.; McCammon, J. A. The Statistical-Thermodynamic Basis for Computation of Binding Affinities: A Critical Review. Biophys. J. 1997, 72,1047-1069.
-
(1997)
Biophys. J.
, pp. 1047-1069
-
-
Gilson, M.K.1
Given, J.A.2
Bush, B.L.3
McCammon, J.A.4
-
6
-
-
0027054352
-
Partitioning of Free Energy Contributions in the Estimation of Binding Constants: Residual Motions and Consequences for Amide-Amide Hydrogen Bond Strengths
-
(a) Searle, M. S.; Williams, D. H.; Gerhard, U. Partitioning of Free Energy Contributions in the Estimation of Binding Constants: Residual Motions and Consequences for Amide-Amide Hydrogen Bond Strengths. J. Am. Chem. Soc. 1992,114,10697-10704.
-
(1992)
J. Am. Chem. Soc.
, pp. 10697-10704
-
-
Searle, M.S.1
Williams, D.H.2
Gerhard, U.3
-
7
-
-
0029940017
-
Empirical Free Energy as a Target Function in Docking and Design: Application to HIV-1 Protease Inhibitors
-
(b) King, B. L.; Vajda, S.; DeLisi, C. Empirical Free Energy as a Target Function in Docking and Design: Application to HIV-1 Protease Inhibitors. FEES Lett. 1996, 384, 87-91.
-
(1996)
FEES Lett.
, vol.384
, pp. 87-91
-
-
King, B.L.1
Vajda, S.2
Delisi, C.3
-
8
-
-
0029933286
-
Prediction of Protein Complexes Using Empirical Free Energy Functions
-
Weng, Z. S.; Vajda, S.; DeLisi, C. Prediction of Protein Complexes Using Empirical Free Energy Functions. Protein Sei. 1996, 5, 614-626.
-
(1996)
Protein Sei.
, vol.5
, pp. 614-626
-
-
Weng, Z.S.1
Vajda, S.2
Delisi, C.3
-
9
-
-
0030474049
-
Vhat Can We Learn from Molecular Recognition in Protein-Ligand Complexes for the Design of New Drugs?
-
Böhm, H.-J.; Keble, G. \Vhat Can We Learn from Molecular Recognition in Protein-Ligand Complexes for the Design of New Drugs? Angew. Chem., Int. Ed. Engl. 1996, 35, 2588-2614.
-
(1996)
Angew. Chem., Int. Ed. Engl.
, vol.35
, pp. 2588-2614
-
-
Böhm, H.-J.1
-
10
-
-
0028861437
-
Elusive Affinities
-
(e) Janin, J. Elusive Affinities. Proteins 1995, 21, 30-39.
-
(1995)
Proteins
, vol.21
, pp. 30-39
-
-
Janin, J.1
-
11
-
-
0030255303
-
Scoring Noncovalent Protein-Ligand Interactions: A Continuous Differentiable Function Tuned to Compute Binding Affinities
-
(f) Jain, A. N. Scoring Noncovalent Protein-Ligand Interactions: A Continuous Differentiable Function Tuned to Compute Binding Affinities. J. Comput.-Aidcd Mol. Design 1996, 10,427-440.
-
(1996)
J. Comput.-Aidcd Mol. Design
, pp. 427-440
-
-
Jain, A.N.1
-
12
-
-
0031547977
-
Empirical free Energy Calculations: A Blind Test and . Further Improvements to the Method
-
(g) Novotny, J,; Bruccoleri, R. E.; Davis, M.; Sharp, K. A. Empirical free Energy Calculations: A Blind Test and . Further Improvements to the Method. J. Mol. Biol. 1997, 268, 401-411.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 401-411
-
-
Novotny, J.1
Bruccoleri, R.E.2
Davis, M.3
Sharp, K.A.4
-
13
-
-
0024553083
-
The Binding of Benzenesulfonamides to Carbonic Anhydrase Enzyme. a Molecular Mechanics Study and Quantitative Structure-Activity Relationships
-
Menziani, M. C.; De Benedetti, P. G.; Gago, F.; Richards, W. G. The Binding of Benzenesulfonamides to Carbonic Anhydrase Enzyme. A Molecular Mechanics Study and Quantitative Structure-Activity Relationships J. Med. Chem. 1989,32, 951-956.
-
(1989)
J. Med. Chem.
, vol.32
, pp. 951-956
-
-
Menziani, M.C.1
De Benedetti, P.G.2
Gago, F.3
Richards, W.G.4
-
14
-
-
0029063951
-
A Priori Prediction of Activity for HIV-1 Protease Inhibitors Employing Energy Minimization in the Active Site
-
(a) Holloway, M. K.; Wai, J. M.; Halgren, T. A.; Fitzgerald, P. M. D.; Vacca, J. P.; Dorsey, B. D.; Levin, R. B.; Thompson, W. J.; Chen, L. J.; deSolms, S. J.; Gaffm, N.; Ghosh, A. K; Giuliani, E. A.; Graham, S. L.; Guare, J. P.; Hungate, R. W.; Lyle, T. A.; Sanders, W. M.; Tucker, T. J.; Wiggins, M.; Wiscount, C. M.; Woltersdorf, O. W.; Young, S. D.; Darke, P. L. & Zugay, J. A. A Priori Prediction of Activity for HIV-1 Protease Inhibitors Employing Energy Minimization in the Active Site. J. Med. Chem. 1995, 38, 305-317.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 305-317
-
-
Holloway, M.K.1
Wai, J.M.2
Halgren, T.A.3
Fitzgerald, P.M.D.4
Vacca, J.P.5
Dorsey, B.D.6
Levin, R.B.7
Thompson, W.J.8
Chen, L.J.9
Desolms, S.J.10
Gaffm, N.11
Ghosh, A.K.12
Giuliani, E.A.13
Graham, S.L.14
Guare, J.P.15
Hungate, R.W.16
Lyle, T.A.17
Sanders, W.M.18
Tucker, T.J.19
Wiggins, M.20
Wiscount, C.M.21
Woltersdorf, O.W.22
Young, S.D.23
Darke, P.L.24
Zugay, J.A.25
more..
-
15
-
-
0039837427
-
Structure-Based Design of Human Immunodeficiency Virus-1 Protease Inhibitors
-
Reynolds, C. H., Holloway, M. K., Cox, H. K., Eds.; American Chemical Society: Washington
-
(b) Holloway, M. K.; Wai, J. M. Structure-Based Design of Human Immunodeficiency Virus-1 Protease Inhibitors. In Computer-Aided Molecular Design. Applications in Agrochemicals, Materials, and Pharmaceuticals; Reynolds, C. H., Holloway, M. K., Cox, H. K., Eds.; American Chemical Society: Washington, 1995; pp 36-50.
-
(1995)
Computer-Aided Molecular Design. Applications in Agrochemicals, Materials, and Pharmaceuticals
, pp. 36-50
-
-
Holloway, M.K.1
Wai, J.M.2
-
16
-
-
0001452822
-
Correlation of Binding Affinities with Non-Bonded Interaction Energies of ThrombinInhibitor Complexes
-
Grootenhuis, P. D. J.; van Galen, P. J. M. Correlation of Binding Affinities with Non-Bonded Interaction Energies of ThrombinInhibitor Complexes. Ada Crystallogr. 1995, D51, 560-566.
-
(1995)
Ada Crystallogr.
, vol.D51
, pp. 560-566
-
-
Grootenhuis, P.D.J.1
Van Galen, P.J.M.2
-
17
-
-
0346029042
-
Calculation of Relative Binding Affinities of Purine Nucleoside Phosphorylase Inhibitors
-
Carson, M.; Yang, Z.; Babu, Y. S.; Montgomery, J. A. Calculation of Relative Binding Affinities of Purine Nucleoside Phosphorylase Inhibitors. Ada Crystallogr. 1995, 057, 536-540.
-
(1995)
Ada Crystallogr.
, vol.57
, pp. 536-540
-
-
Carson, M.1
Yang, Z.2
Babu, Y.S.3
Montgomery, J.A.4
-
18
-
-
13344282748
-
An Approach to Rapid Estimation of Relative Binding Affinities of Enzyme Inhibitors: Application to Peptidomimetic Inhibitors of the Human Immunodeficiency Virus Type 1 Protease
-
Viswanadhan, V. N.; Reddy, M. R.; Wlodawer, A.; Varney, M. D.; Weinstein, J. N. An Approach to Rapid Estimation of Relative Binding Affinities of Enzyme Inhibitors: Application to Peptidomimetic Inhibitors of the Human Immunodeficiency Virus Type 1 Protease. J. Med. Chem. 1996,39, 705-712.
-
(1996)
J. Med. Chem.
, vol.39
, pp. 705-712
-
-
Viswanadhan, V.N.1
Reddy, M.R.2
Wlodawer, A.3
Varney, M.D.4
Weinstein, J.N.5
-
19
-
-
0031469618
-
Assessment of Solvation Effects on Calculated Binding Affinity Differences: Trypsin Inhibition by Flavonoids as a Model System for Congeneric Series
-
Checa, A.; Ortiz, A. R.; de Pascual-Teresa, B.; Gago, F. Assessment of Solvation Effects on Calculated Binding Affinity Differences: Trypsin Inhibition by Flavonoids as a Model System for Congeneric Series. J. Med. Chem. 1997, 40, 4136-4145.
-
(1997)
J. Med. Chem.
, vol.40
, pp. 4136-4145
-
-
Checa, A.1
Ortiz, A.R.2
De Pascual-Teresa, B.3
Gago, F.4
-
21
-
-
7044239742
-
Free Energy Calculations: Applications to Chemical and Biochemical Phenomena
-
(b) Kollman, P. Free Energy Calculations: Applications to Chemical and Biochemical Phenomena. Chem. Rev. 1993, 93, 2395-2417.
-
(1993)
Chem. Rev.
, vol.93
, pp. 2395-2417
-
-
Kollman, P.1
-
22
-
-
0031012579
-
Enzyme-Inhibitor Association Thermodynamics: Explicit and Continuum Solvent Studies
-
Resat, H.; Marrone, T. J.; McCammon, J. A. Enzyme-Inhibitor Association Thermodynamics: Explicit and Continuum Solvent Studies. Biophys. J. 1997, 72, 522-532.
-
(1997)
Biophys. J.
, vol.72
, pp. 522-532
-
-
Resat, H.1
Marrone, T.J.2
McCammon, J.A.3
-
23
-
-
0028155689
-
-
Åqvist, J.; Medina, C.; Samuelsson, J.-E. A New Method for Predicting Binding Affinity in Computer-Aided Drug Design. Protein Eng. 1994, 7, 385-391.
-
(1994)
Protein Eng.
, vol.7
, pp. 385-391
-
-
Åqvist, J.1
Medina, C.2
-
24
-
-
0030906731
-
Binding Affinities for Sulfonamide Inhibitors with Human Thrombin Using Monte Carlo Simulations with a Linear Response Method
-
Jones-Hertzog, D. K.; Jorgensen, W. L. Binding Affinities for Sulfonamide Inhibitors with Human Thrombin Using Monte Carlo Simulations with a Linear Response Method. J. Med. Chem. 1997, 40, 1539-1549.
-
(1997)
J. Med. Chem.
, vol.40
, pp. 1539-1549
-
-
Jones-Hertzog, D.K.1
Jorgensen, W.L.2
-
25
-
-
0028349919
-
Calculation of Relative Differences in the Binding Free Energies of HIV1 Protease Inhibitors: A Thermodynamic Cycle Perturbation Approach
-
Reddy, M. R.; Varney, M. D.; Kalish, V.; Viswanadhan, V. N.; Appell, K. Calculation of Relative Differences in the Binding Free Energies of HIV1 Protease Inhibitors: A Thermodynamic Cycle Perturbation Approach. J. Med. Chem. 1994, 37, 1145-1152.
-
(1994)
J. Med. Chem.
, vol.37
, pp. 1145-1152
-
-
Reddy, M.R.1
Varney, M.D.2
Kalish, V.3
Viswanadhan, V.N.4
Appell, K.5
-
26
-
-
0029000922
-
Prediction of Drug Binding Affinities by Comparative Binding Energy Analysis
-
(a) Ortiz, A. R.; Pisabarro, M. T.; Gago, F.; Wade, R. C. Prediction of Drug Binding Affinities by Comparative Binding Energy Analysis. J. Med. Chem. 1995,38, 2681-2691.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 2681-2691
-
-
Ortiz, A.R.1
Pisabarro, M.T.2
Gago, F.3
Wade, R.C.4
-
27
-
-
0002207845
-
Comparative Binding Energy Analysis
-
Kubinyi, H., Folkers, G., Martin, Y. C., Eds.; Kluwer Academic Publishers: Dordrecht, in press.
-
(b) Wade, R. C.; Ortiz, A. R.; Gago, F. Comparative Binding Energy Analysis. In 3D QSAR in Drug Design, Vol. II, Ligand-Protein Interactions and Molecular Similarity; Kubinyi, H., Folkers, G., Martin, Y. C., Eds.; Kluwer Academic Publishers: Dordrecht, in press.
-
3D QSAR in Drug Design, Vol. II, Ligand-Protein Interactions and Molecular Similarity
-
-
Wade, R.C.1
Ortiz, A.R.2
Gago, F.3
-
28
-
-
0002309097
-
PLS-Partial LeastSquares Projections to Latent Structures
-
Kubinyi, H., Ed.; ESCOM Science Publishers B.V.: Leiden
-
(a) Wold, S.; Johansson, E.; Cocchi, M. PLS-Partial LeastSquares Projections to Latent Structures. In 3D QSAR in Drug Design. Theory, Methods and Applications; Kubinyi, H., Ed.; ESCOM Science Publishers B.V.: Leiden, 1993; pp 523-550.
-
(1993)
3D QSAR in Drug Design. Theory, Methods and Applications
, pp. 523-550
-
-
Wold, S.1
Johansson, E.2
Cocchi, M.3
-
29
-
-
34250078600
-
Partial Least Squares (PLS): Its Strengths and Limitations
-
(b) Cramer, R. D., III. Partial Least Squares (PLS): Its Strengths and Limitations. Perspect. Drug Discovery Design 1993,1,269-278.
-
(1993)
Perspect. Drug Discovery Design
, vol.1
, pp. 269-278
-
-
Cramer III, R.D.1
-
30
-
-
0344778061
-
Semianalytical Treatment of Solvation for Molecular Mechanics and Dynamics
-
Still, W. C.; Tempczyk, A.; Hawley, R. C.; Hendrickson, T. Semianalytical Treatment of Solvation for Molecular Mechanics and Dynamics. J. Am. Chem. Soc. 1990, 112, 6127-6129.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 6127-6129
-
-
Still, W.C.1
Tempczyk, A.2
Hawley, R.C.3
Hendrickson, T.4
-
31
-
-
0029011701
-
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
-
Cornell, W. D.; Cieplak, P.; Bayly, C. L; Gould, I. R.; Merz, K. M.; Ferguson, D. M.; Spellmeyer, D. C.; Fox, T.; Caldwell, J. W.; Kollman, P. A. A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules. J. Am. Chem. Soc. 1995, 777, 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.777
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.L.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
32
-
-
84986492477
-
Atomic Charges Derived from Semiempirical Methods
-
Besler, B. H.; Merz, K. M.; Kollman, P. A. Atomic Charges Derived from Semiempirical Methods. J. Comput. Chem. 1990, 77, 431-439.
-
(1990)
J. Comput. Chem.
, vol.77
, pp. 431-439
-
-
Besler, B.H.1
Merz, K.M.2
Kollman, P.A.3
-
33
-
-
0026627809
-
Synthesis and Antiviral Activity of a Series of HIV-1 Protease Inhibitors with Functionality Tethered to the PI or PI' Phenyl Substituents: X-ray Crystal Structure Assisted Design
-
Thompson, W. J.; Fitzgerald, P. M.; Holloway, M. K.; Emini, E. A.; Darke, P. L.; McKeever, B. M.; Schleif, W. A.; Quintero, J. C.; Zugay J. A.; Tucker T. J.; Schwering, J. E.; Hommick, C. F.; Nunberg, J.; Springer, J. P.; Huff, J. R. Synthesis and Antiviral Activity of a Series of HIV-1 Protease Inhibitors with Functionality Tethered to the PI or PI' Phenyl Substituents: X-ray Crystal Structure Assisted Design. J. Med. Chem. 1992, 35, 1685-1701.
-
(1992)
J. Med. Chem.
, vol.35
, pp. 1685-1701
-
-
Thompson, W.J.1
Fitzgerald, P.M.2
Holloway, M.K.3
Emini, E.A.4
Darke, P.L.5
McKeever, B.M.6
Schleif, W.A.7
Quintero, J.C.8
Zugay, J.A.9
Tucker, T.J.10
Schwering, J.E.11
Hommick, C.F.12
Nunberg, J.13
Springer, J.P.14
Huff, J.R.15
-
34
-
-
0027218692
-
Structure-Based Inhibitors of HIV-1 Protease
-
Wlodawer, A.; Erickson, J. W. Structure-Based Inhibitors of HIV-1 Protease. Annu. Rev. Biochem. 1993, 62, 543-585.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 543-585
-
-
Wlodawer, A.1
Erickson, J.W.2
-
35
-
-
0029757151
-
Solution NMR Evidence that the HIV-1 Protease Catalytic Aspartyl Groups Have Different lonization States in the Complex Formed with the Asymmetric Drug KNI-272
-
Wang, Y.-X.; Freedberg, D. I.; Yamazaki, T.; Wingfield, P. T.; Stahl, S. J.; Kaufman, J. D.; Kiso, Y.; Torchia, D. A. Solution NMR Evidence That the HIV-1 Protease Catalytic Aspartyl Groups Have Different lonization States in the Complex Formed with the Asymmetric Drug KNI-272. Biochemistry 1996, 35, 9945-9950.
-
(1996)
Biochemistry
, vol.35
, pp. 9945-9950
-
-
Wang, Y.-X.1
Freedberg, D.I.2
Yamazaki, T.3
Wingfield, P.T.4
Stahl, S.J.5
Kaufman, J.D.6
Kiso, Y.7
Torchia, D.A.8
-
36
-
-
0003583852
-
-
9685 Scranton Road, San Diego, CA 92121-3752.
-
Insight II, release 95.0 (1995), Biosym/Molecular Simulations, 9685 Scranton Road, San Diego, CA 92121-3752.
-
(1995)
Biosym/Molecular Simulations
-
-
-
37
-
-
0004193646
-
-
Fujitsu Ltd., Tokyo, Japan.
-
Stewart, J. J. P. MOPAC 93 (1993), Fujitsu Ltd., Tokyo, Japan.
-
(1993)
MOPAC 93
-
-
-
38
-
-
0842341771
-
AMI: A New General Purpose Quantum Mechanical Molecular Model
-
Dewar, M. J. S., Zoebisch, E. G., Healy, E. F.; Stewart, J. J. P. AMI: A New General Purpose Quantum Mechanical Molecular Model. J. Am. Chem. Soc. 1985, 707, 3902-3909.
-
(1985)
J. Am. Chem. Soc.
, vol.707
, pp. 3902-3909
-
-
Dewar, M.J.S.1
Zoebisch, E.G.2
Healy, E.F.3
Stewart, J.J.P.4
-
40
-
-
84986486656
-
Rapid Finite Difference Algorithm, Utilizing Successive Over-Relaxation to Solve the PoissonBoltzmann Equation
-
Nicholls, A.; Honig, B. A Rapid Finite Difference Algorithm, Utilizing Successive Over-Relaxation to Solve the PoissonBoltzmann Equation. J. Comput. Chem. 1991, 72, 435-445.
-
(1991)
J. Comput. Chem.
, vol.72
, pp. 435-445
-
-
Nicholls, A.1
Honig, B.A.2
-
41
-
-
0021757436
-
A New Force Field for Molecular Mechanical Simulation of Nucleic Acids and Proteins
-
Weiner, S. J.; Kollman, P. A.; Case, D. A.; Singh, U. C.; Ghio, C; Alagona, C.; Profeta, S.; Weiner, P. A New Force Field for Molecular Mechanical Simulation of Nucleic Acids and Proteins. J. Am. Chem. Soc. 1984, 706, 765-784.
-
(1984)
J. Am. Chem. Soc.
, vol.706
, pp. 765-784
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, C.5
Alagona, C.6
Profeta, S.7
Weiner, P.8
-
42
-
-
84988087911
-
Calculating the Electrostatic Potential of Molecules in Solution: Method and
-
(a) Gilson, M. K.; Sharp, K. A.; Honig, B. H. Calculating the Electrostatic Potential of Molecules in Solution: Method and Error Assessment. J. Comput. Chem. 1987, 9, 327-335.
-
(1987)
J. Comput. Chem.
, vol.9
, pp. 327-335
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.H.3
Assessment, E.4
-
43
-
-
0023779259
-
Calculation of the Total Electrostatic Energy of a Macromolecular System: Solvation Energies, Binding Energies, and Conformational Analysis
-
(b) Gilson, M. K.; Honig, B. Calculation of the Total Electrostatic Energy of a Macromolecular System: Solvation Energies, Binding Energies, and Conformational Analysis. Proteins 1988, 4, 7-18.
-
(1988)
Proteins
, vol.4
, pp. 7-18
-
-
Gilson, M.K.1
Honig, B.2
-
44
-
-
0029019869
-
A Continuum Model for Protein-Protein Interactions: Application to the Docking Problem
-
Jackson, R. M.; Sternberg, M. J. E. A Continuum Model for Protein-Protein Interactions: Application to the Docking Problem. J. Mol. Biol. 1995, 250, 258-275.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 258-275
-
-
Jackson, R.M.1
Sternberg, M.J.E.2
-
45
-
-
0030892498
-
Reliability of CoMFA Models: Effects of Data Scaling and Variable Selection Using a Set of Human Synovial Fluid Phospholipase A2 Inhibitors
-
Ortiz, A. R., Pastor, M., Palomer, A., Cruciani, G., Gago, F., Wade, R. C. Reliability of CoMFA Models: Effects of Data Scaling and Variable Selection Using a Set of Human Synovial Fluid Phospholipase A2 Inhibitors. J. Med. Chem. 1997, 40, 1136-1148.
-
(1997)
J. Med. Chem.
, vol.40
, pp. 1136-1148
-
-
Ortiz, A.R.1
Pastor, M.2
Palomer, A.3
Cruciani, G.4
Gago, F.5
Wade, R.C.6
-
46
-
-
0017429069
-
Areas, Volumes, Packing and
-
Richards, F. M. Areas, Volumes, Packing and Protein Structure. Annu. Rev. Blophys. Bioeng. 1977, 6, 151-176.
-
(1977)
Annu. Rev. Blophys. Bioeng.
, vol.6
, pp. 151-176
-
-
Richards, F.M.1
Structure, P.2
-
47
-
-
0000538815
-
Analytical Molecular Surface Calculation
-
Connolly, M. L. Analytical Molecular Surface Calculation J. Appl Crystalogrl. 1983, 16, 548-558.
-
(1983)
J. Appl Crystalogrl.
, vol.16
, pp. 548-558
-
-
Connolly, M.L.1
-
48
-
-
0022964504
-
Focusing of Electric Fields in the Active Site of Cu-Zn Superoxide Dismutase: Effects of Ionic Strength and
-
Happer, I.; Hagstrom, R.; Fine, R.; Sharp, K; Honig, B. Focusing of Electric Fields in the Active Site of Cu-Zn Superoxide Dismutase: Effects of Ionic Strength and Amino-acid Modification. Proteins 1986, 1, 47-59.
-
(1986)
Proteins
, vol.1
, pp. 47-59
-
-
Happer, I.1
Hagstrom, R.2
Fine, R.3
Sharp, K.4
Honig, B.5
Modification, A.-A.6
-
49
-
-
0027310371
-
Generating Optimal Linear PLS Estimations (GOLPE): An Advanced Chemometric Tool for Handling 3D QSAR Problems
-
Barorri, M.; Constantino, G.; Cruciani, G.; Riganelli, D.; Valigi, R.; Clementi, S. Generating Optimal Linear PLS Estimations (GOLPE): An Advanced Chemometric Tool for Handling 3D QSAR Problems. Quant. Struct.-Act. lîelat. 1993, 12, 9-20.
-
(1993)
Quant. Struct.-Act. Lîelat.
, vol.12
, pp. 9-20
-
-
Barorri, M.1
Constantino, G.2
Cruciani, G.3
Riganelli, D.4
Valigi, R.5
Clementi, S.6
-
50
-
-
33847423502
-
-
Multivariate Infometric Analysis, Viale dei Castagni 16, Perugia, Italy.
-
GOLPE, version 3.0 (1996), Multivariate Infometric Analysis, Viale dei Castagni 16, Perugia, Italy.
-
Version 3.0 (1996)
-
-
-
51
-
-
0013229797
-
Variable Selection in PLS Analysis
-
Kubinyi, H., Ed.; ESCOM Science Publishers B.V.: Leiden
-
Cruciani, G.; Clementi, S.; Baroni, M. Variable Selection in PLS Analysis. In 3D QSAR in Drug Design. Theory, Methods and Applications; Kubinyi, H., Ed.; ESCOM Science Publishers B.V.: Leiden, 1993; pp 551-564.
-
(1993)
3D QSAR in Drug Design. Theory, Methods and Applications
, pp. 551-564
-
-
Cruciani, G.1
Clementi, S.2
Baroni, M.3
-
52
-
-
33847445472
-
-
In preparation.
-
(38) Cuevas, C.; Pérez, C.; Pastor, M.; Gago, F. In preparation.
-
, vol.38
-
-
-
53
-
-
0028324779
-
Rational modification of human synovial fluid phospholipase A2 inhibitors
-
Pisabarro, M. T.; Ortiz, A. R.; Palomer, A.; Cabré, F.; Garcia, L.; Wade, R. C.; Gago, F.; Mauleön, D.; Carganico, G. Rational modification of human synovial fluid phospholipase A2 inhibitors. J. Med. Chem. 1994, 37, 337-341.
-
(1994)
J. Med. Chem.
, vol.37
, pp. 337-341
-
-
Pisabarro, M.T.1
Ortiz, A.R.2
Palomer, A.3
Cabré, F.4
Garcia, L.5
Wade, R.C.6
Gago, F.7
Mauleön, D.8
Carganico, G.9
-
54
-
-
0028986487
-
Targe.ting HIV-1 Protease: A Test of Drug Design Methodologies
-
West, M. L.; Fairlie, D. P. Targe.ting HIV-1 Protease: A Test of Drug Design Methodologies. Trends Pharmacol. Sei. 1995, 16, 67-75.
-
(1995)
Trends Pharmacol. Sei.
, vol.16
, pp. 67-75
-
-
West, M.L.1
Fairlie, D.P.2
-
55
-
-
0030905238
-
Structure-Based Thermodynamic Analysis of HIV-1 Protease Inhibitors
-
Bardi, J. S.; Luque, L; Freire, E. Structure-Based Thermodynamic Analysis of HIV-1 Protease Inhibitors. Biochemistry 1997, 36, 6588-6596.
-
(1997)
Biochemistry
, vol.36
, pp. 6588-6596
-
-
Bardi, J.S.1
Luque, L.2
Freire, E.3
-
56
-
-
0029100207
-
Flexible Docking and Design
-
Rosenfeld, R.; Vajda, S.; DeLisi, C. Flexible Docking and Design. Ann. Rev. Blophys. Biomol. Struct. 1995, 24, 677-700.
-
(1995)
Ann. Rev. Blophys. Biomol. Struct.
, vol.24
, pp. 677-700
-
-
Rosenfeld, R.1
Vajda, S.2
Delisi, C.3
-
57
-
-
0030176923
-
The Energetics of Ligand Binding at Catecholamine Receptors
-
Strange, P. G. The Energetics of Ligand Binding at Catecholamine Receptors. Trends Pharmacol. Sei. 1996, 17, 238-244.
-
(1996)
Trends Pharmacol. Sei.
, vol.17
, pp. 238-244
-
-
Strange, P.G.1
-
58
-
-
0028945211
-
Structural Basis of Drug Resistance for the V82A Mutant of HIV-1 Proteinase
-
(a) Baldwin, E. T.; Bhat, T. N.; Liu, B.; Pattabiraman, N.; Erickson, J. W. Structural Basis of Drug Resistance for the V82A Mutant of HIV-1 Proteinase. Nature Struct. Biol. 1995,2, 244249.
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 244249
-
-
Baldwin, E.T.1
Bhat, T.N.2
Liu, B.3
Pattabiraman, N.4
Erickson, J.W.5
-
59
-
-
0029775232
-
Crystal Structures of Complexes of a Peptidic Inhibitor with Wild-Type and Two Mutant HIV-1 Proteases
-
(b) Hong, L.; Treharne, A.; Hartsuck, J. A.; Foundling, S.; Tang, J. Crystal Structures of Complexes of a Peptidic Inhibitor with Wild-Type and Two Mutant HIV-1 Proteases. Biochemistry 1996, 35, 10627-10633.
-
(1996)
Biochemistry
, vol.35
, pp. 10627-10633
-
-
Hong, L.1
Treharne, A.2
Hartsuck, J.A.3
Foundling, S.4
Tang, J.5
-
60
-
-
0031027901
-
Molecular Basis of HIV-1 Protease Drug Resistance: Structural Analysis of Mutant Proteases Complexed with Cyclic Urea Inhibitors
-
Ala, P. J.; Huston, E. E.; Klabe, R. M.; McCabe, D. D.; Duke, J. L.; Rizzo, C. J.; Korant, B. D.; DeLoskey, R. J.; Lam, P. Y.; Hodge, C. N.; Chang, C. H. Molecular Basis of HIV-1 Protease Drug Resistance: Structural Analysis of Mutant Proteases Complexed with Cyclic Urea Inhibitors. Biochemistry 1997, 36, 1573-1580.
-
(1997)
Biochemistry
, vol.36
, pp. 1573-1580
-
-
Ala, P.J.1
Huston, E.E.2
Klabe, R.M.3
McCabe, D.D.4
Duke, J.L.5
Rizzo, C.J.6
Korant, B.D.7
Deloskey, R.J.8
Lam, P.Y.9
Hodge, C.N.10
Chang, C.H.11
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