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Volumn 143, Issue 4, 2008, Pages 525-536

Residues on the dimer interface of SARS coronavirus 3C-like protease: Dimer stability characterization and enzyme catalytic activity analysis

Author keywords

Catalytic mechanism; Dimer interface; Dimerization activity relationship; Residue residue interactions; Site directed mutagenesis

Indexed keywords

PROTEIN 3C LIKE PROTEASE; UNCLASSIFIED DRUG; VIRUS PROTEIN;

EID: 41349090332     PISSN: 0021924X     EISSN: 17562651     Source Type: Journal    
DOI: 10.1093/jb/mvm246     Document Type: Article
Times cited : (54)

References (39)
  • 2
    • 0037561920 scopus 로고    scopus 로고
    • Rota, P.A., Oberste, M.S., Monroe, S.S., Nix, W.A., Campagnoli, R., Icenogle, J.P., Penaranda, S., Bankamp, B., Maher, K., Chen, M.H., Tong, S., Tamin, A., Lowe, L., Frace, M., DeRisi, J.L., Chen, Q., Wang, D., Erdman, D.D., Peret, T.C., Burns, C., Ksiazek, T.G., Rollin, P.E., Sanchez, A., Liffick, S., Holloway, B., Limor, J., McCaustland, K., Olsen-Rasmussen, M., Fouchier, R., Gunther, S., Osterhaus, A.D., Drosten, C., Pallansch, M.A., Anderson, L.J., and Bellini, W.J. (2003) Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science 300, 1394-1399
    • Rota, P.A., Oberste, M.S., Monroe, S.S., Nix, W.A., Campagnoli, R., Icenogle, J.P., Penaranda, S., Bankamp, B., Maher, K., Chen, M.H., Tong, S., Tamin, A., Lowe, L., Frace, M., DeRisi, J.L., Chen, Q., Wang, D., Erdman, D.D., Peret, T.C., Burns, C., Ksiazek, T.G., Rollin, P.E., Sanchez, A., Liffick, S., Holloway, B., Limor, J., McCaustland, K., Olsen-Rasmussen, M., Fouchier, R., Gunther, S., Osterhaus, A.D., Drosten, C., Pallansch, M.A., Anderson, L.J., and Bellini, W.J. (2003) Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science 300, 1394-1399
  • 3
    • 0038823524 scopus 로고    scopus 로고
    • Marra, M.A, Jones, S.J, Astell, C.R, Holt, R.A, Brooks-Wilson, A, Butterfield, Y.S, Khattra, J, Asano, J.K, Barber, S.A, Chan, S.Y, Cloutier, A, Coughlin, S.M, Freeman, D, Girn, N, Griffith, O.L, Leach, S.R, Mayo, M, McDonald, H, Montgomery, S.B, Pandoh, P.K, Petrescu, A.S, Robertson, A.G, Schein, J.E, Siddiqui, A, Smailus, D.E, Stott, J.M, Yang, G.S, Plummer, F, Andonov, A, Artsob, H, Bastien, N, Bernard, K, Booth, T.F, Bowness, D, Czub, M, Drebot, M, Fernando, L, Flick, R, Garbutt, M, Gray, M, Grolla, A, Jones, S, Feldmann, H, Meyers, A, Kabani, A, Li, Y, Normand, S, Stroher, U, Tipples, G.A, Tyler, S, Vogrig, R, Ward, D, Watson, B, Brunham, R.C, Krajden, M, Petric, M, Skowronski, D.M, Upton, C, and Roper, R.L, 2003 The Genome sequence of the SARS-associated coronavirus. Science 300, 1399-1404
    • Marra, M.A., Jones, S.J., Astell, C.R., Holt, R.A., Brooks-Wilson, A., Butterfield, Y.S., Khattra, J., Asano, J.K., Barber, S.A., Chan, S.Y., Cloutier, A., Coughlin, S.M., Freeman, D., Girn, N., Griffith, O.L., Leach, S.R., Mayo, M., McDonald, H., Montgomery, S.B., Pandoh, P.K., Petrescu, A.S., Robertson, A.G., Schein, J.E., Siddiqui, A., Smailus, D.E., Stott, J.M., Yang, G.S., Plummer, F., Andonov, A., Artsob, H., Bastien, N., Bernard, K., Booth, T.F., Bowness, D., Czub, M., Drebot, M., Fernando, L., Flick, R., Garbutt, M., Gray, M., Grolla, A., Jones, S., Feldmann, H., Meyers, A., Kabani, A., Li, Y., Normand, S., Stroher, U., Tipples, G.A., Tyler, S., Vogrig, R., Ward, D., Watson, B., Brunham, R.C., Krajden, M., Petric, M., Skowronski, D.M., Upton, C., and Roper, R.L. (2003) The Genome sequence of the SARS-associated coronavirus. Science 300, 1399-1404
  • 7
    • 2642545063 scopus 로고    scopus 로고
    • Dissection study on the severe acute respiratory syndrome 3C-like protease reveals the critical role of the extra domain in dimerization of the enzyme: Defining the extra domain as a new target for design of highly specific protease inhibitors
    • Shi, J., Wei, Z., and Song, J. (2004) Dissection study on the severe acute respiratory syndrome 3C-like protease reveals the critical role of the extra domain in dimerization of the enzyme: defining the extra domain as a new target for design of highly specific protease inhibitors. J. Biol. Chem. 279, 24765-24773
    • (2004) J. Biol. Chem , vol.279 , pp. 24765-24773
    • Shi, J.1    Wei, Z.2    Song, J.3
  • 8
    • 12844272193 scopus 로고    scopus 로고
    • Severe acute respiratory syndrome coronavirus 3C-like proteinase N terminus is indispensable for proteolytic activity but not for enzyme dimerization. Biochemical and thermodynamic investigation in conjunction with molecular dynamics simulations
    • Chen, S., Chen, L., Tan, J., Chen, J., Du, L., Sun, T., Shen, J., Chen, K., Jiang, H., and Shen, X. (2005) Severe acute respiratory syndrome coronavirus 3C-like proteinase N terminus is indispensable for proteolytic activity but not for enzyme dimerization. Biochemical and thermodynamic investigation in conjunction with molecular dynamics simulations. J. Biol. Chem. 280, 164-173
    • (2005) J. Biol. Chem , vol.280 , pp. 164-173
    • Chen, S.1    Chen, L.2    Tan, J.3    Chen, J.4    Du, L.5    Sun, T.6    Shen, J.7    Chen, K.8    Jiang, H.9    Shen, X.10
  • 9
    • 20744453676 scopus 로고    scopus 로고
    • Critical assessment of important regions in the subunit association and catalytic action of the severe acute respiratory syndrome coronavirus main protease
    • Hsu, W.C., Chang, H.C., Chou, C.Y., Tsai, P.J., Lin, P.I., and Chang, G.G. (2005) Critical assessment of important regions in the subunit association and catalytic action of the severe acute respiratory syndrome coronavirus main protease. J. Biol. Chem. 280, 22741-22748
    • (2005) J. Biol. Chem , vol.280 , pp. 22741-22748
    • Hsu, W.C.1    Chang, H.C.2    Chou, C.Y.3    Tsai, P.J.4    Lin, P.I.5    Chang, G.G.6
  • 11
    • 33644946136 scopus 로고    scopus 로고
    • The catalysis of the SARS 3C-like protease is under extensive regulation by its extra domain
    • Shi, J. and Song, J. (2006) The catalysis of the SARS 3C-like protease is under extensive regulation by its extra domain. FEBS J. 273, 1035-1045
    • (2006) FEBS J , vol.273 , pp. 1035-1045
    • Shi, J.1    Song, J.2
  • 12
    • 9744250871 scopus 로고    scopus 로고
    • Quaternary structure of the severe acute respiratory syndrome (SARS) coronavirus main protease
    • Chou, C.Y., Chang, H.C., Hsu, W.C., Lin, T.Z., Lin, C.H., and Chang, G.G. (2004) Quaternary structure of the severe acute respiratory syndrome (SARS) coronavirus main protease. Biochemistry 43, 14958-14970
    • (2004) Biochemistry , vol.43 , pp. 14958-14970
    • Chou, C.Y.1    Chang, H.C.2    Hsu, W.C.3    Lin, T.Z.4    Lin, C.H.5    Chang, G.G.6
  • 13
    • 9144268403 scopus 로고    scopus 로고
    • Biosynthesis, purification, and substrate specificity of severe acute respiratory syndrome coronavirus 3C-like proteinase
    • Fan, K., Wei, P., Feng, Q., Chen, S., Huang, C., Ma, L., Lai, B., Pei, J., Liu, Y., Chen, J., and Lai, L. (2004) Biosynthesis, purification, and substrate specificity of severe acute respiratory syndrome coronavirus 3C-like proteinase. J. Biol. Chem. 279, 1637-1642
    • (2004) J. Biol. Chem , vol.279 , pp. 1637-1642
    • Fan, K.1    Wei, P.2    Feng, Q.3    Chen, S.4    Huang, C.5    Ma, L.6    Lai, B.7    Pei, J.8    Liu, Y.9    Chen, J.10    Lai, L.11
  • 16
    • 22144455034 scopus 로고    scopus 로고
    • The interaction between severe acute respiratory syndrome coronavirus 3C-like proteinase and a dimeric inhibitor by capillary electrophoresis
    • Ding, L., Zhang, X.X., Wei, P., Fan, K., and Lai, L. (2005) The interaction between severe acute respiratory syndrome coronavirus 3C-like proteinase and a dimeric inhibitor by capillary electrophoresis. Anal. Biochem. 343, 159-165
    • (2005) Anal. Biochem , vol.343 , pp. 159-165
    • Ding, L.1    Zhang, X.X.2    Wei, P.3    Fan, K.4    Lai, L.5
  • 17
    • 41349093223 scopus 로고    scopus 로고
    • Berendsen, H.J.C., Postma, J.P.M., Van Gunsteren, W.F., and Hermans, J. (1981) In Intermolecular Forces, (Pullman, B., ed.), pp. 331-342, Reidel, Dordrecht, The Netherlands
    • Berendsen, H.J.C., Postma, J.P.M., Van Gunsteren, W.F., and Hermans, J. (1981) In Intermolecular Forces, (Pullman, B., ed.), pp. 331-342, Reidel, Dordrecht, The Netherlands
  • 19
    • 33846823909 scopus 로고
    • Particle Mesh Ewald: An N Log(N) method for Ewald sums in large systems
    • Darden, T., York, D., and Pedersen, L. (1993) Particle Mesh Ewald: an N Log(N) method for Ewald sums in large systems. J. Chem. Phys. 98, 10089-10092
    • (1993) J. Chem. Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 20
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Rychaert, J.P., Ciccotti, G., and Berendsen, J.C. (1977) Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 23, 327-341
    • (1977) J. Comput. Phys , vol.23 , pp. 327-341
    • Rychaert, J.P.1    Ciccotti, G.2    Berendsen, J.C.3
  • 23
    • 19944427356 scopus 로고    scopus 로고
    • Enzymatic activity characterization of SARS coronavirus 3C-like protease by fluorescence resonance energy transfer technique
    • Chen, S., Chen, L.L., Luo, H.B., Sun, T., Chen, J., Ye, F., Cai, J.H., Shen, J.K., Shen, X., and Jiang, H.L. (2005) Enzymatic activity characterization of SARS coronavirus 3C-like protease by fluorescence resonance energy transfer technique. Acta Pharmacol. Sin. 26, 99-106
    • (2005) Acta Pharmacol. Sin , vol.26 , pp. 99-106
    • Chen, S.1    Chen, L.L.2    Luo, H.B.3    Sun, T.4    Chen, J.5    Ye, F.6    Cai, J.H.7    Shen, J.K.8    Shen, X.9    Jiang, H.L.10
  • 25
    • 0028304962 scopus 로고
    • Satisfying hydrogen bonding potential in proteins
    • McDonald, I.K. and Thornton, J.M. (1994) Satisfying hydrogen bonding potential in proteins. J. Mol. Biol. 238, 777-793
    • (1994) J. Mol. Biol , vol.238 , pp. 777-793
    • McDonald, I.K.1    Thornton, J.M.2
  • 26
    • 2442435903 scopus 로고    scopus 로고
    • Characterization of SARS main protease and inhibitor assay using a fluorogenic substrate
    • Kuo, C.J., Chi, Y.H., Hsu, J.T., and Liang, P.H. (2004) Characterization of SARS main protease and inhibitor assay using a fluorogenic substrate. Biochem. Biophys. Res. Commun. 318, 862-867
    • (2004) Biochem. Biophys. Res. Commun , vol.318 , pp. 862-867
    • Kuo, C.J.1    Chi, Y.H.2    Hsu, J.T.3    Liang, P.H.4
  • 28
    • 0036646055 scopus 로고    scopus 로고
    • Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain
    • Anand, K., Palm, G.J., Mesters, J.R., Siddell, S.G., Ziebuhr, J., and Hilgenfeld, R. (2002) Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain. EMBO J. 21, 3213-3224
    • (2002) EMBO J , vol.21 , pp. 3213-3224
    • Anand, K.1    Palm, G.J.2    Mesters, J.R.3    Siddell, S.G.4    Ziebuhr, J.5    Hilgenfeld, R.6
  • 30
    • 33646169548 scopus 로고    scopus 로고
    • Enzymatic activity of the SARS coronavirus main proteinase dimer
    • Graziano, V., McGrath, W.J., DeGruccio, A.M., Dunn, J.J., and Mangel, W.F. (2006) Enzymatic activity of the SARS coronavirus main proteinase dimer. FEBS Lett. 580, 2577-2583
    • (2006) FEBS Lett , vol.580 , pp. 2577-2583
    • Graziano, V.1    McGrath, W.J.2    DeGruccio, A.M.3    Dunn, J.J.4    Mangel, W.F.5
  • 32
    • 6344270316 scopus 로고    scopus 로고
    • Characterization of SARS-CoV main protease and identification of biologically active small molecule inhibitors using a continuous fluorescence-based assay
    • Kao, R.Y., To, A.P., Ng, L.W., Tsui, W.H., Lee, T.S., Tsoi, H.W., and Yuen, K.Y. (2004) Characterization of SARS-CoV main protease and identification of biologically active small molecule inhibitors using a continuous fluorescence-based assay. FEBS Lett. 576, 325-330
    • (2004) FEBS Lett , vol.576 , pp. 325-330
    • Kao, R.Y.1    To, A.P.2    Ng, L.W.3    Tsui, W.H.4    Lee, T.S.5    Tsoi, H.W.6    Yuen, K.Y.7
  • 33
    • 18844448391 scopus 로고    scopus 로고
    • Mutational and inhibitive analysis of SARS coronavirus 3C-like protease by fluorescence resonance energy transfer-based assays
    • Kuang, W.F., Chow, L.P., Wu, M.H., and Hwang, L.H. (2005) Mutational and inhibitive analysis of SARS coronavirus 3C-like protease by fluorescence resonance energy transfer-based assays. Biochem. Biophys. Res. Commun. 331, 1554-1559
    • (2005) Biochem. Biophys. Res. Commun , vol.331 , pp. 1554-1559
    • Kuang, W.F.1    Chow, L.P.2    Wu, M.H.3    Hwang, L.H.4
  • 34
    • 0027138172 scopus 로고
    • Expression of virus-encoded proteinases: Functional and structural similarities with cellular enzymes
    • Dougherty, W.G. and Semler, B.L. (1993) Expression of virus-encoded proteinases: functional and structural similarities with cellular enzymes. Microbiol. Rev. 57, 781-822
    • (1993) Microbiol. Rev , vol.57 , pp. 781-822
    • Dougherty, W.G.1    Semler, B.L.2
  • 35
    • 0030970783 scopus 로고    scopus 로고
    • Biosynthesis, purification, and characterization of the human coronavirus 229E 3C-like proteinase
    • Ziebuhr, J., Heusipp, G., and Siddell, S.G. (1997) Biosynthesis, purification, and characterization of the human coronavirus 229E 3C-like proteinase. J. Virol. 71, 3992-3997
    • (1997) J. Virol , vol.71 , pp. 3992-3997
    • Ziebuhr, J.1    Heusipp, G.2    Siddell, S.G.3
  • 36
    • 0034072633 scopus 로고    scopus 로고
    • Virus-encoded proteinases and proteolytic processing in the Nidovirales
    • Ziebuhr, J., Snijder, E.J., and Gorbalenya, A.E. (2000) Virus-encoded proteinases and proteolytic processing in the Nidovirales. J. Gen. Virol. 81, 853-879
    • (2000) J. Gen. Virol , vol.81 , pp. 853-879
    • Ziebuhr, J.1    Snijder, E.J.2    Gorbalenya, A.E.3
  • 38
    • 33744945316 scopus 로고    scopus 로고
    • Only one protomer is active in the dimer of SARS 3C-like proteinase
    • Chen, H., Wei, P., Huang, C., Tan, L., Liu, Y., and Lai, L. (2006) Only one protomer is active in the dimer of SARS 3C-like proteinase. J. Biol. Chem. 281, 13894-13898
    • (2006) J. Biol. Chem , vol.281 , pp. 13894-13898
    • Chen, H.1    Wei, P.2    Huang, C.3    Tan, L.4    Liu, Y.5    Lai, L.6
  • 39
    • 3142613358 scopus 로고    scopus 로고
    • 3C-like proteinase from SARS coronavirus catalyzes substrate hydrolysis by a general base mechanism
    • Huang, C., Wei, P., Fan, K., Liu, Y., and Lai, L. (2004) 3C-like proteinase from SARS coronavirus catalyzes substrate hydrolysis by a general base mechanism. Biochemistry 43, 4568-4574
    • (2004) Biochemistry , vol.43 , pp. 4568-4574
    • Huang, C.1    Wei, P.2    Fan, K.3    Liu, Y.4    Lai, L.5


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