-
1
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob F., and Monod J. Genetic regulatory mechanisms in the synthesis of proteins. J. Mol. Biol. 3 (1961) 318-356
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
3
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
Giot L., et al. A protein interaction map of Drosophila melanogaster. Science 302 (2003) 1727-1736
-
(2003)
Science
, vol.302
, pp. 1727-1736
-
-
Giot, L.1
-
4
-
-
0033974688
-
Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
-
Ito T., et al. Toward a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl. Acad. Sci. USA 97 (2000) 1143-1147
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 1143-1147
-
-
Ito, T.1
-
5
-
-
9144264169
-
A map of the interactome network of the metazoan C. elegans
-
Li S., et al. A map of the interactome network of the metazoan C. elegans. Science 303 (2004) 540-543
-
(2004)
Science
, vol.303
, pp. 540-543
-
-
Li, S.1
-
6
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual J.F., et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature 437 (2005) 1173-1178
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
-
7
-
-
25144498379
-
A human protein-protein interaction network: a resource for annotating the proteome
-
Stelzl U., et al. A human protein-protein interaction network: a resource for annotating the proteome. Cell 122 (2005) 957-968
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
-
8
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
Uetz P., et al. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403 (2000) 623-627
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
-
9
-
-
33947219266
-
Large-scale mapping of human protein-protein interactions by mass spectrometry
-
Ewing R.M., et al. Large-scale mapping of human protein-protein interactions by mass spectrometry. Mol. Syst. Biol. 3 (2007) 89
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 89
-
-
Ewing, R.M.1
-
10
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin A.-C., et al. Proteome survey reveals modularity of the yeast cell machinery. Nature 440 (2006) 631-636
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.-C.1
-
11
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin A.-C., et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415 (2002) 141-147
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.-C.1
-
12
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan N.J., et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440 (2006) 637-643
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
-
13
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
Butland G., et al. Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 (2005) 531-537
-
(2005)
Nature
, vol.433
, pp. 531-537
-
-
Butland, G.1
-
14
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
Tong A.H.Y., et al. Global mapping of the yeast genetic interaction network. Science 303 (2004) 808-813
-
(2004)
Science
, vol.303
, pp. 808-813
-
-
Tong, A.H.Y.1
-
15
-
-
33746525415
-
Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways
-
Lehner B., Crombie C., Tischler J., Fortunato A., and Fraser A.G. Systematic mapping of genetic interactions in Caenorhabditis elegans identifies common modifiers of diverse signaling pathways. Nat. Genet. 38 (2006) 896-903
-
(2006)
Nat. Genet.
, vol.38
, pp. 896-903
-
-
Lehner, B.1
Crombie, C.2
Tischler, J.3
Fortunato, A.4
Fraser, A.G.5
-
16
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
17
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart J.M., Segal E., Koller D., and Kim S.K. A gene-coexpression network for global discovery of conserved genetic modules. Science 302 (2003) 249-255
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
18
-
-
34848827433
-
Comparing classical pathways and modern networks: towards the development of an edge ontology
-
Lu L.J., et al. Comparing classical pathways and modern networks: towards the development of an edge ontology. Trends Biochem. Sci. 32 (2007) 320-331
-
(2007)
Trends Biochem. Sci.
, vol.32
, pp. 320-331
-
-
Lu, L.J.1
-
19
-
-
34548024598
-
Integrating physical and genetic maps: from genomes to interaction networks
-
Beyer A., Bandyopadhyay S., and Ideker T. Integrating physical and genetic maps: from genomes to interaction networks. Nat. Rev. Genet. 8 (2007) 699-710
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 699-710
-
-
Beyer, A.1
Bandyopadhyay, S.2
Ideker, T.3
-
20
-
-
0036899363
-
The third dimension for protein interactions and complexes
-
Aloy P., and Russell R.B. The third dimension for protein interactions and complexes. Trends Biochem. Sci. 27 (2002) 633-638
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 633-638
-
-
Aloy, P.1
Russell, R.B.2
-
21
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann R.D., et al. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269 (1995) 496-512
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
-
23
-
-
0036270789
-
Microbial diversity and function in soil: from genes to ecosystems
-
Torsvik V., and Øvreås L. Microbial diversity and function in soil: from genes to ecosystems. Curr. Opin. Microbiol. 5 (2002) 240-245
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 240-245
-
-
Torsvik, V.1
Øvreås, L.2
-
25
-
-
34547540925
-
Dissecting biological "dark matter with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
-
Marcy Y., et al. Dissecting biological "dark matter with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. Proc. Natl. Acad. Sci. USA 104 (2007) 11889-11894
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 11889-11894
-
-
Marcy, Y.1
-
26
-
-
33745085561
-
Sequencing genomes from single cells by polymerase cloning
-
Zhang K., Martiny A.C., Reppas N.B., Barry K.W., Malek J., Chisholm S.W., and Church G.M. Sequencing genomes from single cells by polymerase cloning. Nat. Biotechnol. 24 (2006) 680-686
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 680-686
-
-
Zhang, K.1
Martiny, A.C.2
Reppas, N.B.3
Barry, K.W.4
Malek, J.5
Chisholm, S.W.6
Church, G.M.7
-
27
-
-
0037398732
-
Missing genes in metabolic pathways: a comparative genomics approach
-
Osterman A., and Overbeek R. Missing genes in metabolic pathways: a comparative genomics approach. Curr. Opin. Chem. Biol. 7 (2003) 238-251
-
(2003)
Curr. Opin. Chem. Biol.
, vol.7
, pp. 238-251
-
-
Osterman, A.1
Overbeek, R.2
-
28
-
-
0347364646
-
Genome evolution reveals biochemical networks and functional modules
-
von Mering C., Zdobnov E.M., Tsoka S., Ciccarelli F.D., Pereira-Leal J.B., Ouzounis C.A., and Bork P. Genome evolution reveals biochemical networks and functional modules. Proc. Natl. Acad. Sci. USA 100 (2003) 15428-15433
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 15428-15433
-
-
von Mering, C.1
Zdobnov, E.M.2
Tsoka, S.3
Ciccarelli, F.D.4
Pereira-Leal, J.B.5
Ouzounis, C.A.6
Bork, P.7
-
29
-
-
19344362896
-
Towards cellular systems in 4D
-
Bork P., and Serrano L. Towards cellular systems in 4D. Cell 121 (2005) 507-509
-
(2005)
Cell
, vol.121
, pp. 507-509
-
-
Bork, P.1
Serrano, L.2
-
30
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C., Krause R., Snel B., Cornell M., Oliver S.G., Fields S., and Bork P. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 417 (2002) 399-403
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
31
-
-
33847744247
-
How complete are current yeast and human protein-interaction networks?
-
Hart G.T., Ramani A.K., and Marcotte E.M. How complete are current yeast and human protein-interaction networks?. Genome Biol. 7 (2006) 120
-
(2006)
Genome Biol.
, vol.7
, pp. 120
-
-
Hart, G.T.1
Ramani, A.K.2
Marcotte, E.M.3
-
32
-
-
36949000237
-
Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps
-
Huang H., Jedynak B.M., and Bader J.S. Where have all the interactions gone? Estimating the coverage of two-hybrid protein interaction maps. PLoS Comput. Biol. 3 (2007) e214
-
(2007)
PLoS Comput. Biol.
, vol.3
-
-
Huang, H.1
Jedynak, B.M.2
Bader, J.S.3
-
34
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
-
Pellegrini M., Marcotte E.M., Thompson M.J., Eisenberg D., and Yeates T.O. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl. Acad. Sci. USA 96 (1999) 4285-4288
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
35
-
-
0037715424
-
Systematic discovery of analogous enzymes in thiamin biosynthesis
-
Morett E., et al. Systematic discovery of analogous enzymes in thiamin biosynthesis. Nat. Biotechnol. 21 (2003) 790-795
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 790-795
-
-
Morett, E.1
-
36
-
-
11144319853
-
Use of logic relationships to decipher protein network organization
-
Bowers P.M., Cokus S.J., Eisenberg D., and Yeates T.O. Use of logic relationships to decipher protein network organization. Science 306 (2004) 2246-2249
-
(2004)
Science
, vol.306
, pp. 2246-2249
-
-
Bowers, P.M.1
Cokus, S.J.2
Eisenberg, D.3
Yeates, T.O.4
-
37
-
-
55449127787
-
Predicting functional gene links from phylogenetic-statistical analyses of whole genomes
-
Barker D., and Pagel M. Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. PLoS Comput. Biol. 1 (2005) e3
-
(2005)
PLoS Comput. Biol.
, vol.1
-
-
Barker, D.1
Pagel, M.2
-
38
-
-
33644700003
-
Toward automatic reconstruction of a highly resolved tree of life
-
Ciccarelli F.D., Doerks T., von Mering C., Creevey C.J., Snel B., and Bork P. Toward automatic reconstruction of a highly resolved tree of life. Science 311 (2006) 1283-1287
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
von Mering, C.3
Creevey, C.J.4
Snel, B.5
Bork, P.6
-
39
-
-
21844471754
-
Systematic association of genes to phenotypes by genome and literature mining
-
Korbel J.O., Doerks T., Jensen L.J., Perez-Iratxeta C., Kaczanowski S., Hooper S.D., Andrade M.A., and Bork P. Systematic association of genes to phenotypes by genome and literature mining. PLoS Biol. 3 (2005) e134
-
(2005)
PLoS Biol.
, vol.3
-
-
Korbel, J.O.1
Doerks, T.2
Jensen, L.J.3
Perez-Iratxeta, C.4
Kaczanowski, S.5
Hooper, S.D.6
Andrade, M.A.7
Bork, P.8
-
40
-
-
0034306448
-
Gene context conservation of a higher order than operons
-
Lathe III W.C., Snel B., and Bork P. Gene context conservation of a higher order than operons. Trends Biochem. Sci. 25 (2000) 474-479
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 474-479
-
-
Lathe III, W.C.1
Snel, B.2
Bork, P.3
-
41
-
-
9144230986
-
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes
-
Rogozin I.B., Makarova K.S., Wolf Y.I., and Koonin E.V. Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes. Brief Bioinform. 5 (2004) 131-149
-
(2004)
Brief Bioinform.
, vol.5
, pp. 131-149
-
-
Rogozin, I.B.1
Makarova, K.S.2
Wolf, Y.I.3
Koonin, E.V.4
-
42
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek R., Fonstein M., D'Souza M., Pusch G.D., and Maltsev N. The use of gene clusters to infer functional coupling. Proc. Natl. Acad. Sci. USA 96 (1999) 2896-2901
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
44
-
-
35348926028
-
Quantitative assessment of protein function prediction from metagenomics shotgun sequences
-
Harrington E.D., Singh A.H., Doerks T., Letunic I., von Mering C., Jensen L.J., Raes J., and Bork P. Quantitative assessment of protein function prediction from metagenomics shotgun sequences. Proc. Natl. Acad. Sci. USA 104 (2007) 13913-13918
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 13913-13918
-
-
Harrington, E.D.1
Singh, A.H.2
Doerks, T.3
Letunic, I.4
von Mering, C.5
Jensen, L.J.6
Raes, J.7
Bork, P.8
-
45
-
-
0032169271
-
Conservation of gene order: a fingerprint of proteins that physically interact
-
Dandekar T., Snel B., Huynen M., and Bork P. Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci. 23 (1998) 324-328
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
46
-
-
3042703044
-
Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs
-
Korbel J.O., Jensen L.J., von Mering C., and Bork P. Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs. Nat. Biotechnol. 22 (2004) 911-917
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 911-917
-
-
Korbel, J.O.1
Jensen, L.J.2
von Mering, C.3
Bork, P.4
-
47
-
-
0037052935
-
Connected gene neighborhoods in prokaryotic genomes
-
Rogozin I.B., Makarova K.S., Murvai J., Czabarka E., Wolf Y.I., Tatusov R.L., Szekely L.A., and Koonin E.V. Connected gene neighborhoods in prokaryotic genomes. Nucleic Acids Res. 30 (2002) 2212-2223
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2212-2223
-
-
Rogozin, I.B.1
Makarova, K.S.2
Murvai, J.3
Czabarka, E.4
Wolf, Y.I.5
Tatusov, R.L.6
Szekely, L.A.7
Koonin, E.V.8
-
50
-
-
34848825637
-
Chromatin remodelling is a major source of coexpression of linked genes in yeast
-
Batada N.N., Urrutia A.O., and Hurst L.D. Chromatin remodelling is a major source of coexpression of linked genes in yeast. Trends Genet. 23 (2007) 480-484
-
(2007)
Trends Genet.
, vol.23
, pp. 480-484
-
-
Batada, N.N.1
Urrutia, A.O.2
Hurst, L.D.3
-
51
-
-
0034161444
-
Regulation of adjacent yeast genes
-
Kruglyak S., and Tang H. Regulation of adjacent yeast genes. Trends Genet. 16 (2000) 109-111
-
(2000)
Trends Genet.
, vol.16
, pp. 109-111
-
-
Kruglyak, S.1
Tang, H.2
-
52
-
-
8544264562
-
Efficient attenuation of stochasticity in gene expression through post-transcriptional control
-
Swain P.S. Efficient attenuation of stochasticity in gene expression through post-transcriptional control. J. Mol. Biol. 344 (2004) 965-976
-
(2004)
J. Mol. Biol.
, vol.344
, pp. 965-976
-
-
Swain, P.S.1
-
53
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright A.J., Iliopoulos I., Kyrpides N.C., and Ouzounis C.A. Protein interaction maps for complete genomes based on gene fusion events. Nature 402 (1999) 86-90
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
54
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
Marcotte E.M., Pellegrini M., Ng H.L., Rice D.W., Yeates T.O., and Eisenberg D. Detecting protein function and protein-protein interactions from genome sequences. Science 285 (1999) 751-753
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
55
-
-
0025107955
-
Evolution of the tryptophan synthetase of fungi. Analysis of experimentally fused Escherichia coli tryptophan synthetase alpha and beta chains
-
Burns D.M., Horn V., Paluh J., and Yanofsky C. Evolution of the tryptophan synthetase of fungi. Analysis of experimentally fused Escherichia coli tryptophan synthetase alpha and beta chains. J. Biol. Chem. 265 (1990) 2060-2069
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 2060-2069
-
-
Burns, D.M.1
Horn, V.2
Paluh, J.3
Yanofsky, C.4
-
56
-
-
0036046771
-
Evolution of gene fusions: horizontal transfer versus independent events
-
research0024
-
Yanai I., Wolf Y.I., and Koonin E.V. Evolution of gene fusions: horizontal transfer versus independent events. Genome Biol. 3 (2002) research0024
-
(2002)
Genome Biol.
, vol.3
-
-
Yanai, I.1
Wolf, Y.I.2
Koonin, E.V.3
-
57
-
-
0034595516
-
Co-evolution of proteins with their interaction partners
-
Goh C.S., Bogan A.A., Joachimiak M., Walther D., and Cohen F.E. Co-evolution of proteins with their interaction partners. J. Mol. Biol. 299 (2000) 283-293
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 283-293
-
-
Goh, C.S.1
Bogan, A.A.2
Joachimiak, M.3
Walther, D.4
Cohen, F.E.5
-
58
-
-
0035177259
-
Similarity of phylogenetic trees as indicator of protein-protein interaction
-
Pazos F., and Valencia A. Similarity of phylogenetic trees as indicator of protein-protein interaction. Protein Eng. 14 (2001) 609-614
-
(2001)
Protein Eng.
, vol.14
, pp. 609-614
-
-
Pazos, F.1
Valencia, A.2
-
59
-
-
0030249746
-
The coevolution of gene family trees
-
Fryxell K.J. The coevolution of gene family trees. Trends Genet. 12 (1996) 364-369
-
(1996)
Trends Genet.
, vol.12
, pp. 364-369
-
-
Fryxell, K.J.1
-
60
-
-
33746255908
-
The coordinated evolution of yeast proteins is constrained by functional modularity
-
Chen Y., and Dokholyan N.V. The coordinated evolution of yeast proteins is constrained by functional modularity. Trends Genet. 22 (2006) 416-419
-
(2006)
Trends Genet.
, vol.22
, pp. 416-419
-
-
Chen, Y.1
Dokholyan, N.V.2
-
61
-
-
0037436412
-
Exploiting the co-evolution of interacting proteins to discover interaction specificity
-
Ramani A.K., and Marcotte E.M. Exploiting the co-evolution of interacting proteins to discover interaction specificity. J. Mol. Biol. 327 (2003) 273-284
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 273-284
-
-
Ramani, A.K.1
Marcotte, E.M.2
-
62
-
-
38949168935
-
High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
-
Juan D., Pazos F., and Valencia A. High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. Proc. Natl. Acad. Sci. USA 105 (2008) 934-939
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 934-939
-
-
Juan, D.1
Pazos, F.2
Valencia, A.3
-
63
-
-
24644502565
-
Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome
-
Pazos F., Ranea J.A.G., Juan D., and Sternberg M.J.E. Assessing protein co-evolution in the context of the tree of life assists in the prediction of the interactome. J. Mol. Biol. 352 (2005) 1002-1015
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 1002-1015
-
-
Pazos, F.1
Ranea, J.A.G.2
Juan, D.3
Sternberg, M.J.E.4
-
64
-
-
24144476642
-
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships
-
Sato T., Yamanishi Y., Kanehisa M., and Toh H. The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinformatics 21 (2005) 3482-3489
-
(2005)
Bioinformatics
, vol.21
, pp. 3482-3489
-
-
Sato, T.1
Yamanishi, Y.2
Kanehisa, M.3
Toh, H.4
-
65
-
-
4644231028
-
Prolinks: a database of protein functional linkages derived from coevolution
-
Bowers P.M., Pellegrini M., Thompson M.J., Fierro J., Yeates T.O., and Eisenberg D. Prolinks: a database of protein functional linkages derived from coevolution. Genome Biol. 5 (2004) R35
-
(2004)
Genome Biol.
, vol.5
-
-
Bowers, P.M.1
Pellegrini, M.2
Thompson, M.J.3
Fierro, J.4
Yeates, T.O.5
Eisenberg, D.6
-
66
-
-
34547586817
-
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction
-
Hu Z., et al. VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Res. 35 (2007) W625-W632
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Hu, Z.1
-
67
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte E.M., Pellegrini M., Thompson M.J., Yeates T.O., and Eisenberg D. A combined algorithm for genome-wide prediction of protein function. Nature 402 (1999) 83-86
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.M.1
Pellegrini, M.2
Thompson, M.J.3
Yeates, T.O.4
Eisenberg, D.5
-
68
-
-
36348983834
-
Current progress in network research: toward reference networks for key model organisms
-
Srinivasan B.S., Shah N.H., Flannick J.A., Abeliuk E., Novak A.F., and Batzoglou S. Current progress in network research: toward reference networks for key model organisms. Brief Bioinform. 8 (2007) 318-332
-
(2007)
Brief Bioinform.
, vol.8
, pp. 318-332
-
-
Srinivasan, B.S.1
Shah, N.H.2
Flannick, J.A.3
Abeliuk, E.4
Novak, A.F.5
Batzoglou, S.6
-
69
-
-
33846086800
-
STRING 7 - recent developments in the integration and prediction of protein interactions
-
von Mering C., Jensen L.J., Kuhn M., Chaffron S., Doerks T., Krüger B., Snel B., and Bork P. STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Res. 35 (2007) D358-D362
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
von Mering, C.1
Jensen, L.J.2
Kuhn, M.3
Chaffron, S.4
Doerks, T.5
Krüger, B.6
Snel, B.7
Bork, P.8
-
70
-
-
34250743173
-
Systematic discovery of in vivo phosphorylation networks
-
Linding R., et al. Systematic discovery of in vivo phosphorylation networks. Cell 129 (2007) 1415-1426
-
(2007)
Cell
, vol.129
, pp. 1415-1426
-
-
Linding, R.1
-
71
-
-
38549130733
-
STITCH: interaction networks of chemicals and proteins
-
Kuhn M., von Mering C., Campillos M., Jensen L.J., and Bork P. STITCH: interaction networks of chemicals and proteins. Nucleic Acids Res. 36 (2008) D684-D688
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kuhn, M.1
von Mering, C.2
Campillos, M.3
Jensen, L.J.4
Bork, P.5
-
72
-
-
13244284551
-
Dynamic complex formation during the yeast cell cycle
-
de Lichtenberg U., Jensen L.J., Brunak S., and Bork P. Dynamic complex formation during the yeast cell cycle. Science 307 (2005) 724-727
-
(2005)
Science
, vol.307
, pp. 724-727
-
-
de Lichtenberg, U.1
Jensen, L.J.2
Brunak, S.3
Bork, P.4
-
73
-
-
33845873289
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
-
Letunic I., and Bork P. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23 (2007) 127-128
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
|