Use of logic relationships to decipher protein network organization

Science

Volumn 306, Issue 5705, 2004, Pages 2246-2249

  Bowers, Peter M ^a   Cokus, Shawn J ^a   Eisenberg, David ^a   Yeates, Todd O ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR NEURAL NETWORKS; GENES; MOLECULAR DYNAMICS;

CELLULAR FUNCTIONS; GENOME RESEARCH; GENOMIC ANALYSIS; PROTEIN NETWORK ORGANIZATION;

PROTEINS;

PROTEIN;

BIOLOGY;

ARTICLE; CALCULATION; CELL FUNCTION; GENOME; LOGIC; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION;

BACTERIAL PHYSIOLOGY; BACTERIAL PROTEINS; COMPUTATIONAL BIOLOGY; GENOME; GENOME, BACTERIAL; LOGIC; MOVEMENT; PHYLOGENY; PROTEIN ARRAY ANALYSIS; PROTEIN INTERACTION MAPPING; PROTEINS; SHIKIMIC ACID; VIRULENCE;

EID: 11144319853     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.1103330     Document Type: Article

References (25)

1. S. Li et al., Science 303, 540 (2004); published online 2 January 2004 (10.1126/science.1091403).
2. M. Strong, P. Mallick, M. Pellegrini, M. J. Thompson, D. Eisenberg, Genome Biol. 4, R59 (2003).
3. L. Giot et al., Science 302, 1727 (2003); published online 6 November 2003 (10.1126/science.1090289).
4. P. M. Bowers et al., Genome Biol. 5, R35 (2004).
5. C. von Mering et al., Nucleic Acids Res. 31, 258 (2003).
6. A. H. Y. Tong et al., Science 303, 808 (2004).
7. Y. Ho et al., Nature 415, 180 (2002).
8. A. C. Gavin et al., Nature 415, 141 (2002).
9. T. Ito et al., Proc. Natl. Acad. Sci. U.S.A. 98, 4569 (2001).
10. P. Uetz et al., Nature 403, 623 (2000).
11. M. Pellegrini, E. M. Marcotte, M. J. Thompson, D. Eisenberg, T. O. Yeates, Proc. Natl. Acad. Sci. U.S.A. 96, 4285 (1999).
12. R. Overbeek, M. Fonstein, M. D'Souza, G. D. Pusch, N. Maltsev, Proc. Natl. Acad. Sci. U.S.A. 96, 2896 (1999).
13. E. M. Marcotte et al., Science 285, 751 (1999).
14. A. J. Enright, I. Iliopoulos, N. C. Kyrpides, C. A. Ouzounis, Nature 402, 86 (1999).
15. M. D. Ermolaeva, O. White, S. L. Salzberg, Nucleic Acids Res. 29, 1216 (2001).
16. M. Pellegrini, M. Thompson, J. Fierro, P. Bowers, J. Cell. Biochem. Suppl. 37, 106 (2001).
17. J. Wu, S. Kasif, C. DeLisi, Bioinformatics 19, 1524 (2003).
18. E. Morett et al., Nat. Biotechnol. 21, 790 (2003).
19. S. V. Date, E. M. Marcotte, Nat. Biotechnol. 21, 1055 (2003).
20. R. Milo et al., Science 298, 824 (2002).
21. R. Milo et al., Science 303, 1538 (2004).
22. R. L. Tatusov, E. V. Koonin, D. J. Lipman, Science 278, 631 (1997).
23. R. L. Tatusov et al., BMC Bioinformatics 4, 41 (2003).
24. H. Theil, Statistical Decomposition Analysis with Applications in the Social and Administrative Sciences, vol. 14 of Studies in Mathematical and Managerial Economics (North-Holland, Amsterdam, 1972), pp. xvi, 337.
25. This work was supported by the U.S. Department of Energy and the Howard Hughes Medical Institute.