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Volumn 137, Issue , 2008, Pages 31-123

Nonequilibrium fluctuations in small systems: From physics to biology

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EID: 39649125421     PISSN: 00652385     EISSN: None     Source Type: Book Series    
DOI: 10.1002/9780470238080.ch2     Document Type: Article
Times cited : (196)

References (199)
  • 3
    • 17444384783 scopus 로고    scopus 로고
    • Work fluctuations, transient violations of the second law and free-energy recovery methods
    • F. Ritort, Work fluctuations, transient violations of the second law and free-energy recovery methods. Semin. Poincaré 2, 193-226 (2003).
    • (2003) Semin. Poincaré , vol.2 , pp. 193-226
    • Ritort, F.1
  • 4
    • 23844508956 scopus 로고    scopus 로고
    • The nonequilibrium thermodynamics of small systems
    • C. Bustamante, J. Liphardt, and F. Ritort, The nonequilibrium thermodynamics of small systems. Phys. Today 58, 43-48 (2005).
    • (2005) Phys. Today , vol.58 , pp. 43-48
    • Bustamante, C.1    Liphardt, J.2    Ritort, F.3
  • 5
    • 23344452815 scopus 로고    scopus 로고
    • Brownian motion: A paradigm of soft matter and biological physics
    • E. Frey and K. Kroy, Brownian motion: a paradigm of soft matter and biological physics. Ann. Phys (Leipzig) 14, 20-50 (2005).
    • (2005) Ann. Phys (Leipzig) , vol.14 , pp. 20-50
    • Frey, E.1    Kroy, K.2
  • 6
    • 28944448017 scopus 로고    scopus 로고
    • The mesoscopic dynamics of thermodynamic systems
    • D. Reguera, J. M. Rubí, and J. M. G. Vilar, The mesoscopic dynamics of thermodynamic systems. J. Phys. Chem. 109, 21502-21515 (2005).
    • (2005) J. Phys. Chem , vol.109 , pp. 21502-21515
    • Reguera, D.1    Rubí, J.M.2    Vilar, J.M.G.3
  • 7
    • 27744481288 scopus 로고    scopus 로고
    • Cycle kinetics, steady state thermodynamics and motors - a paradigm for living matter physics
    • H. Qian, Cycle kinetics, steady state thermodynamics and motors - a paradigm for living matter physics. J. Phys. (Condensed Matter) 17, S3783-S3794 (2005).
    • (2005) J. Phys. (Condensed Matter , vol.17
    • Qian, H.1
  • 9
    • 16444382474 scopus 로고
    • Phase behavior of concentrated suspensions of nearly hard colloidal sphres
    • P. N. Pusey and W. Van Megen, Phase behavior of concentrated suspensions of nearly hard colloidal sphres. Nature 320, 340-342 (1986).
    • (1986) Nature , vol.320 , pp. 340-342
    • Pusey, P.N.1    Van Megen, W.2
  • 10
    • 0034723445 scopus 로고    scopus 로고
    • Three-dimensional direct imaging of structural relaxation near the colloidal glass transition
    • E. R. Weeks, J. C. Crocker, A. C. Levitt, A. Schofield, and D. A. Weitz, Three-dimensional direct imaging of structural relaxation near the colloidal glass transition. Science 287, 627-631 (2000).
    • (2000) Science , vol.287 , pp. 627-631
    • Weeks, E.R.1    Crocker, J.C.2    Levitt, A.C.3    Schofield, A.4    Weitz, D.A.5
  • 11
    • 0037439763 scopus 로고    scopus 로고
    • Direct visualization of ageing in colloidal glasses
    • R. E. Courtland and E. R. Weeks, Direct visualization of ageing in colloidal glasses. J. Phys. (Condensed Matter) 15, S359-S365 (2003).
    • (2003) J. Phys. (Condensed Matter) , vol.15
    • Courtland, R.E.1    Weeks, E.R.2
  • 14
    • 0021992946 scopus 로고
    • Muscle contraction and free energy transduction in biological systems
    • E. Eisenberg and T. L. Hill, Muscle contraction and free energy transduction in biological systems. Science 277, 999-1006 (1985).
    • (1985) Science , vol.277 , pp. 999-1006
    • Eisenberg, E.1    Hill, T.L.2
  • 15
  • 18
    • 0032478549 scopus 로고    scopus 로고
    • RNA polymerase as a molecular motor
    • J. Gelles and R. Landick, RNA polymerase as a molecular motor. Cell 93, 13-16 (1998).
    • (1998) Cell , vol.93 , pp. 13-16
    • Gelles, J.1    Landick, R.2
  • 19
    • 0035827342 scopus 로고    scopus 로고
    • A marvelous machine for making messages
    • A. Klug, A marvelous machine for making messages, Science 292, 1844-1846 (2001).
    • (2001) Science , vol.292 , pp. 1844-1846
    • Klug, A.1
  • 20
    • 0037154982 scopus 로고    scopus 로고
    • A unified theory of gene expression
    • G. Orphanides and D. Reinberg, A unified theory of gene expression. Cell 108, 439-451 (2002).
    • (2002) Cell , vol.108 , pp. 439-451
    • Orphanides, G.1    Reinberg, D.2
  • 21
    • 0032582494 scopus 로고    scopus 로고
    • Force and velocity measured for single molecules of RNA polymerase
    • M. D. Wang, M. J. Schnitzer, H. Yin, R. Landick, J. Gelles, and S. M. Block, Force and velocity measured for single molecules of RNA polymerase, Science 282, 902-907 (1998).
    • (1998) Science , vol.282 , pp. 902-907
    • Wang, M.D.1    Schnitzer, M.J.2    Yin, H.3    Landick, R.4    Gelles, J.5    Block, S.M.6
  • 22
    • 0034737593 scopus 로고    scopus 로고
    • Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase
    • R. J. Davenport, G. J. Wuite, R. Landick, and C. Bustamante, Single-molecule study of transcriptional pausing and arrest by E. coli RNA polymerase. Science 287, 2497-2500 (2000).
    • (2000) Science , vol.287 , pp. 2497-2500
    • Davenport, R.J.1    Wuite, G.J.2    Landick, R.3    Bustamante, C.4
  • 23
    • 0346258014 scopus 로고    scopus 로고
    • Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
    • J. W. Shaevitz, E. A. Abbondanzieri, R. Landick, and S. M. Block, Backtracking by single RNA polymerase molecules observed at near-base-pair resolution. Nature 426, 684-687 (2003).
    • (2003) Nature , vol.426 , pp. 684-687
    • Shaevitz, J.W.1    Abbondanzieri, E.A.2    Landick, R.3    Block, S.M.4
  • 25
    • 0037015022 scopus 로고    scopus 로고
    • Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
    • N. R. Forde, D. Izhaky, G. R. Woodcock, G. J. L. Wuite and C. Bustamante, Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase. Proc. Natl. Acad. Sci. USA 99, 11682-11687 (2002).
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11682-11687
    • Forde, N.R.1    Izhaky, D.2    Woodcock, G.R.3    Wuite, G.J.L.4    Bustamante, C.5
  • 26
    • 4243360952 scopus 로고
    • Probability of second law violations in shearing steady states
    • E. G. D. Cohen, D. J. Evans, and G. P. Morriss, Probability of second law violations in shearing steady states. Phys. Rev. Lett. 71, 2401-2404 (1993).
    • (1993) Phys. Rev. Lett , vol.71 , pp. 2401-2404
    • Cohen, E.G.D.1    Evans, D.J.2    Morriss, G.P.3
  • 27
    • 0000806622 scopus 로고
    • Equilibrium microstates which generate second law violating steady-states
    • D. J. Evans and D. J. Searles, Equilibrium microstates which generate second law violating steady-states. Phys. Rev. E 50, 1645-1648 (1994).
    • (1994) Phys. Rev. E , vol.50 , pp. 1645-1648
    • Evans, D.J.1    Searles, D.J.2
  • 28
    • 4244208748 scopus 로고
    • Dynamical ensembles in nonequilibrium statistical mechanics
    • G. Gallavotti and E. G. D. Cohen, Dynamical ensembles in nonequilibrium statistical mechanics. Phys. Rev. Lett. 74, 2694-2697 (1995).
    • (1995) Phys. Rev. Lett , vol.74 , pp. 2694-2697
    • Gallavotti, G.1    Cohen, E.G.D.2
  • 29
    • 2142834120 scopus 로고    scopus 로고
    • Some recent advances in classical statistical mechanics
    • P. Garbaczewski and R. Olkiewicz, eds, Springer-Velag, Berlin
    • E. G. D. Cohen, Some recent advances in classical statistical mechanics, in Dynamics of Dissipation, Vol. 597 (P. Garbaczewski and R. Olkiewicz, eds.), Springer-Velag, Berlin, 2002, p. 7.
    • (2002) Dynamics of Dissipation , vol.597 , pp. 7
    • Cohen, E.G.D.1
  • 30
    • 2642523184 scopus 로고    scopus 로고
    • Nonequilibrium thermodynamics?
    • Preprint, arXiv:cond-mat/0301172
    • G. Gallavotti, Nonequilibrium thermodynamics? Preprint, arXiv:cond-mat/0301172, 2003.
    • (2003)
    • Gallavotti, G.1
  • 31
    • 4243754128 scopus 로고    scopus 로고
    • Nonequilibrium equality for free-energy differences
    • C. Jarzynski, Nonequilibrium equality for free-energy differences, Phys. Rev. Lett. 78, 2690-2693 (1997).
    • (1997) Phys. Rev. Lett , vol.78 , pp. 2690-2693
    • Jarzynski, C.1
  • 32
    • 28744450379 scopus 로고    scopus 로고
    • A unified description of two theorems in non-equilibrium statistical mechanics: The fluctuation theorem and the work relation
    • J. C. Reid, E. M. Sevick, and D. J. Evans, A unified description of two theorems in non-equilibrium statistical mechanics: the fluctuation theorem and the work relation. Europhys. Lett. 72, 726-730 (2005).
    • (2005) Europhys. Lett , vol.72 , pp. 726-730
    • Reid, J.C.1    Sevick, E.M.2    Evans, D.J.3
  • 33
    • 1542347541 scopus 로고    scopus 로고
    • A nonequilibrium free energy theorem for deterministic systems
    • D. J. Evans, A nonequilibrium free energy theorem for deterministic systems. Mol. Phys. 101, 1551-1554 (2003).
    • (2003) Mol. Phys , vol.101 , pp. 1551-1554
    • Evans, D.J.1
  • 34
    • 0036864627 scopus 로고    scopus 로고
    • The fluctuation theorem
    • D. J. Evans and D. Searles, The fluctuation theorem. Adv. Phys. 51, 1529-1585 (2002).
    • (2002) Adv. Phys , vol.51 , pp. 1529-1585
    • Evans, D.J.1    Searles, D.2
  • 35
    • 8344245726 scopus 로고    scopus 로고
    • On the origin and use of fluctuation relations on the entropy
    • C. Maes, On the origin and use of fluctuation relations on the entropy. Semin. Poincaré 2, 145-191 (2003).
    • (2003) Semin. Poincaré , vol.2 , pp. 145-191
    • Maes, C.1
  • 36
    • 33244496338 scopus 로고    scopus 로고
    • What is the microscopic response of a system driven far from equilibrium
    • P. Garbaczewski and R. Olkiewicz, eds, Springer-Verlag, Berlin
    • C. Jarzynski, What is the microscopic response of a system driven far from equilibrium. In Dynamics of Dissipation, Vol. 597 (P. Garbaczewski and R. Olkiewicz, eds.) Springer-Verlag, Berlin, 2002, pp. 63-82.
    • (2002) Dynamics of Dissipation , vol.597 , pp. 63-82
    • Jarzynski, C.1
  • 37
    • 34547676441 scopus 로고    scopus 로고
    • Nonequilibrium work relations
    • J. Kurchan, Nonequilibrium work relations, J. Stat. Mech. (2007) P07005.
    • (2007) J. Stat. Mech
    • Kurchan, J.1
  • 38
    • 0040120726 scopus 로고    scopus 로고
    • Fluctuation theorem for stochastic dynamics
    • J. Kurchan, Fluctuation theorem for stochastic dynamics. J. Phys. A 31, 3719-3729 (1998).
    • (1998) J. Phys. A , vol.31 , pp. 3719-3729
    • Kurchan, J.1
  • 39
    • 0033246864 scopus 로고    scopus 로고
    • A Gallavotti-Cohen type symmetry in the large deviation functional for stochastic dynamics
    • J. L. Lebowitz and H. Spohn, A Gallavotti-Cohen type symmetry in the large deviation functional for stochastic dynamics. J. Stat. Phys. 95, 333-365 (1999).
    • (1999) J. Stat. Phys , vol.95 , pp. 333-365
    • Lebowitz, J.L.1    Spohn, H.2
  • 40
    • 27144483816 scopus 로고    scopus 로고
    • Entropy production along a stochastic trajectory and an integral fluctuation theorem
    • U. Seifert, Entropy production along a stochastic trajectory and an integral fluctuation theorem. Phys. Rev. Lett. 95, 040602 (2005).
    • (2005) Phys. Rev. Lett , vol.95 , pp. 040602
    • Seifert, U.1
  • 42
    • 0001169060 scopus 로고
    • Non-linear fluctuation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem
    • G. N. Bochkov and Y. E. Kuzovlev, Non-linear fluctuation relations and stochastic models in nonequilibrium thermodynamics. I. Generalized fluctuation-dissipation theorem. Physica A 106, 443-479 (1981).
    • (1981) Physica A , vol.106 , pp. 443-479
    • Bochkov, G.N.1    Kuzovlev, Y.E.2
  • 43
    • 33745234793 scopus 로고    scopus 로고
    • Time-symmetric fluctuations in nonequilibrium systems
    • C. Maes and M. H. van Wieren, Time-symmetric fluctuations in nonequilibrium systems. Phys. Rev. Lett. 96, 240601 (2006).
    • (2006) Phys. Rev. Lett , vol.96 , pp. 240601
    • Maes, C.1    van Wieren, M.H.2
  • 44
    • 0030510671 scopus 로고    scopus 로고
    • Chaotic hypothesis: Onsager reciprocity and fluctuation dissipation theorem
    • G. Gallavotti, Chaotic hypothesis: Onsager reciprocity and fluctuation dissipation theorem. J. Stat. Phys. 84, 899 (1996).
    • (1996) J. Stat. Phys , vol.84 , pp. 899
    • Gallavotti, G.1
  • 45
    • 0000765761 scopus 로고    scopus 로고
    • Entropy production fluctuation theorem and the nonequilibrium work relation for free-energy differences
    • G.E. Crooks, Entropy production fluctuation theorem and the nonequilibrium work relation for free-energy differences. Phys. Rev. E 60, 2721-2726 (1999).
    • (1999) Phys. Rev. E , vol.60 , pp. 2721-2726
    • Crooks, G.E.1
  • 46
    • 0000186593 scopus 로고    scopus 로고
    • Path-ensemble averages in systems driven far from equilibrium
    • G. E. Crooks, Path-ensemble averages in systems driven far from equilibrium. Phys. Rev. E 61, 2361-2366 (2000).
    • (2000) Phys. Rev. E , vol.61 , pp. 2361-2366
    • Crooks, G.E.1
  • 47
    • 33646471468 scopus 로고
    • Statistical mechanics of fluid mixtures
    • J. G. Kirkwood, Statistical mechanics of fluid mixtures. J. Chem. Phys. 3, 300-313 (1935).
    • (1935) J. Chem. Phys , vol.3 , pp. 300-313
    • Kirkwood, J.G.1
  • 48
    • 36849122972 scopus 로고
    • High-temperature equation of state by a perturbation method. I. Nonpolar gases
    • R. W. Zwanzig, High-temperature equation of state by a perturbation method. I. Nonpolar gases. J. Chem. Phys. 22, 1420-1426 (1954).
    • (1954) J. Chem. Phys , vol.22 , pp. 1420-1426
    • Zwanzig, R.W.1
  • 49
    • 3242655723 scopus 로고    scopus 로고
    • Classical and quantum fluctuation theorems for heat exchange
    • C. Jarzynski and D. K. Wojcik, Classical and quantum fluctuation theorems for heat exchange. Phys. Rev. Lett. 92, 230602 (2004).
    • (2004) Phys. Rev. Lett , vol.92 , pp. 230602
    • Jarzynski, C.1    Wojcik, D.K.2
  • 51
    • 33750883870 scopus 로고    scopus 로고
    • Steady state thermodynamics
    • S. Sasa and H. Tasaki, Steady state thermodynamics. J. Stat. Phys. 125, 125-224 (2006).
    • (2006) J. Stat. Phys , vol.125 , pp. 125-224
    • Sasa, S.1    Tasaki, H.2
  • 52
    • 0032181215 scopus 로고    scopus 로고
    • An experimental test of the Gallavotti-Cohen fluctuation theorem
    • S. Ciliberto and C. Laroche, An experimental test of the Gallavotti-Cohen fluctuation theorem. J. Phys. IV (France) 8, 215-220 (1998).
    • (1998) J. Phys. IV (France) , vol.8 , pp. 215-220
    • Ciliberto, S.1    Laroche, C.2
  • 54
    • 2942624503 scopus 로고    scopus 로고
    • Fluidized granular medium as an instance of the fluctuation theorem
    • K. Feitosa and N. Menon, Fluidized granular medium as an instance of the fluctuation theorem. Phys. Rev. Lett. 92, 164301 (2004).
    • (2004) Phys. Rev. Lett , vol.92 , pp. 164301
    • Feitosa, K.1    Menon, N.2
  • 55
    • 27144474506 scopus 로고    scopus 로고
    • Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates
    • S. Schuler, T. Speck, C. Tierz, J. Wrachtrup, and U. Seifert, Experimental test of the fluctuation theorem for a driven two-level system with time-dependent rates. Phys. Rev. Lett. 94, 180602 (2005).
    • (2005) Phys. Rev. Lett , vol.94 , pp. 180602
    • Schuler, S.1    Speck, T.2    Tierz, C.3    Wrachtrup, J.4    Seifert, U.5
  • 56
    • 18344406027 scopus 로고    scopus 로고
    • Steady-state thermodynamics of langevin systems
    • T. Hatano and S. Sasa, Steady-state thermodynamics of langevin systems. Phys. Rev. Lett. 86, 3463-3466 (2001).
    • (2001) Phys. Rev. Lett , vol.86 , pp. 3463-3466
    • Hatano, T.1    Sasa, S.2
  • 57
    • 0037194057 scopus 로고    scopus 로고
    • Experimental demonstration of violations of the second law of thermodynamics for small systems and short timescales
    • G. M. Wang, E. M. Sevick, E. Mittag, D. J. Searles, and D. J. Evans, Experimental demonstration of violations of the second law of thermodynamics for small systems and short timescales. Phys. Rev. Lett. 89, 050601 (2002).
    • (2002) Phys. Rev. Lett , vol.89 , pp. 050601
    • Wang, G.M.1    Sevick, E.M.2    Mittag, E.3    Searles, D.J.4    Evans, D.J.5
  • 58
    • 2542460626 scopus 로고    scopus 로고
    • Fluctuations and irreversibility: An experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap
    • D. M. Carberry, J. C. Reid, G. M. Wang, E. M. Sevick, D. J. Searles, and D. J. Evans, Fluctuations and irreversibility: an experimental demonstration of a second-law-like theorem using a colloidal particle held in an optical trap. Phys. Rev. Lett. 92, 140601 (2004).
    • (2004) Phys. Rev. Lett , vol.92 , pp. 140601
    • Carberry, D.M.1    Reid, J.C.2    Wang, G.M.3    Sevick, E.M.4    Searles, D.J.5    Evans, D.J.6
  • 61
    • 0142089219 scopus 로고    scopus 로고
    • Extension of the fluctuation theorem
    • R. Van Zon and E. G. D. Cohen, Extension of the fluctuation theorem. Phys. Rev. Lett. 91, 110601 (2003).
    • (2003) Phys. Rev. Lett , vol.91 , pp. 110601
    • Van Zon, R.1    Cohen, E.G.D.2
  • 62
    • 0038542284 scopus 로고    scopus 로고
    • Stationary and transient work-fluctuation theorems for a dragged Brownian particle
    • R. Van Zon and E. G. D. Cohen, Stationary and transient work-fluctuation theorems for a dragged Brownian particle. Phys. Rev. E 67, 046102 (2003).
    • (2003) Phys. Rev. E , vol.67 , pp. 046102
    • Van Zon, R.1    Cohen, E.G.D.2
  • 63
    • 37649026988 scopus 로고    scopus 로고
    • Extended heat-fluctuation theorems for a system with deterministic and stochastic forces
    • R. Van Zon and E. G. D. Cohen, Extended heat-fluctuation theorems for a system with deterministic and stochastic forces. Phys. Rev. E 69, 056121 (2004).
    • (2004) Phys. Rev. E , vol.69 , pp. 056121
    • Van Zon, R.1    Cohen, E.G.D.2
  • 64
    • 33344477054 scopus 로고    scopus 로고
    • Thermodynamics of a colloidal particle in a time-dependent non-harmonic potential
    • V. Blickle, T. Speck, L. Helden, U. Seifert, and C. Bechinger, Thermodynamics of a colloidal particle in a time-dependent non-harmonic potential. Phys. Rev. Lett. 96, 070603 (2006).
    • (2006) Phys. Rev. Lett , vol.96 , pp. 070603
    • Blickle, V.1    Speck, T.2    Helden, L.3    Seifert, U.4    Bechinger, C.5
  • 65
    • 2342575459 scopus 로고    scopus 로고
    • Power and heat fluctuations for electric circuits
    • R. Van Zon, S. Ciliberto, and E. G. D. Cohen, Power and heat fluctuations for electric circuits. Phys. Rev. Lett. 92, 313601 (2004).
    • (2004) Phys. Rev. Lett , vol.92 , pp. 313601
    • Van Zon, R.1    Ciliberto, S.2    Cohen, E.G.D.3
  • 68
    • 27944481256 scopus 로고    scopus 로고
    • Nonequilibrium fluctuations in a resistor
    • N. Garnier and S. Ciliberto, Nonequilibrium fluctuations in a resistor. Phys. Rev. E 71, 060101(R) (2005).
    • (2005) Phys. Rev. E , vol.71
    • Garnier, N.1    Ciliberto, S.2
  • 70
    • 0037341054 scopus 로고    scopus 로고
    • Resource letter: Lbot-1: laser-based optical tweezers
    • M. J. Lang and S. M. Block, Resource letter: Lbot-1: laser-based optical tweezers. Am. J. Phys. 71, 201-215 (2003).
    • (2003) Am. J. Phys , vol.71 , pp. 201-215
    • Lang, M.J.1    Block, S.M.2
  • 72
    • 16344371778 scopus 로고    scopus 로고
    • common themes and variations
    • RNA and protein folding
    • D. Thirumalai and C. Hyeon, RNA and protein folding: common themes and variations. Biochemistry 44, 4957-4970 (2005).
    • (2005) Biochemistry , vol.44 , pp. 4957-4970
    • Thirumalai, D.1    Hyeon, C.2
  • 73
    • 33746780344 scopus 로고    scopus 로고
    • Proteins: Structural, thermodynamic and kinetic aspects
    • J. L. Barrat and J. Kurchan, eds, Springer-Verlag, Berlin
    • A. V. Finkelstein, Proteins: structural, thermodynamic and kinetic aspects, in Slow Relaxations and Nonequilibrium Dynamics (J. L. Barrat and J. Kurchan, eds.) Springer-Verlag, Berlin, 2004, pp. 650-703.
    • (2004) Slow Relaxations and Nonequilibrium Dynamics , pp. 650-703
    • Finkelstein, A.V.1
  • 74
    • 33746675190 scopus 로고    scopus 로고
    • Single molecule experiments in biological physics: Methods and applications
    • F. Ritort, Single molecule experiments in biological physics: methods and applications. J. Phys. (Condensed Matter) 18, R531-R583 (2006).
    • (2006) J. Phys. (Condensed Matter) , vol.18
    • Ritort, F.1
  • 75
    • 0034328878 scopus 로고    scopus 로고
    • Grabbing the cat by the tail: Manipulating molecules one by one
    • C. Bustamante, J. C. Macosko, and G. I. L. Wuite, Grabbing the cat by the tail: manipulating molecules one by one. Nat. Rev. Mol. Cell Biol. 1, 130-136 (2000).
    • (2000) Nat. Rev. Mol. Cell Biol , vol.1 , pp. 130-136
    • Bustamante, C.1    Macosko, J.C.2    Wuite, G.I.L.3
  • 80
    • 0037286741 scopus 로고    scopus 로고
    • An optical-trap force transducer that operates by direct measurement of light momentum
    • S. B. Smith, Y. Cui, and C. Bustamante, An optical-trap force transducer that operates by direct measurement of light momentum. Methods Enzymol. 361, 134-162 (2003).
    • (2003) Methods Enzymol , vol.361 , pp. 134-162
    • Smith, S.B.1    Cui, Y.2    Bustamante, C.3
  • 82
    • 0037336483 scopus 로고    scopus 로고
    • The micromechanics of DNA
    • J. Marko and S. Cocco, The micromechanics of DNA. Phys. World 16, 37-41 (2003).
    • (2003) Phys. World , vol.16 , pp. 37-41
    • Marko, J.1    Cocco, S.2
  • 83
    • 0035957720 scopus 로고    scopus 로고
    • Reversible unfolding of single RNA molecules by mechanical force
    • J. Liphardt, B. Onoa, S. B. Smith, I. Tinoco, Jr., and C. Bustamante, Reversible unfolding of single RNA molecules by mechanical force. Science 292, 733-737 (2001).
    • (2001) Science , vol.292 , pp. 733-737
    • Liphardt, J.1    Onoa, B.2    Smith, S.B.3    Tinoco Jr., I.4    Bustamante, C.5
  • 84
    • 25444512161 scopus 로고    scopus 로고
    • Direct observation of the three-state folding of a single protein molecule
    • C. Cecconi, E. A. Shank, C. Bustamante, and S. Marqusee, Direct observation of the three-state folding of a single protein molecule. Science 309, 2057-2060 (2005).
    • (2005) Science , vol.309 , pp. 2057-2060
    • Cecconi, C.1    Shank, E.A.2    Bustamante, C.3    Marqusee, S.4
  • 85
    • 0038187577 scopus 로고    scopus 로고
    • from elasticity to unzipping
    • Theoretical models for single-molecule DNA and RNA experiments
    • S. Cocco, J. Marko, and R. Monasson, Theoretical models for single-molecule DNA and RNA experiments: from elasticity to unzipping. C. R. Phys. 3, 569-584 (2002).
    • (2002) C. R. Phys , vol.3 , pp. 569-584
    • Cocco, S.1    Marko, J.2    Monasson, R.3
  • 86
    • 33744768052 scopus 로고    scopus 로고
    • Force dependent fragility in RNA hairpins
    • M. Manosas, D. Collin, and F. Ritort, Force dependent fragility in RNA hairpins. Phys. Rev. Lett. 96, 218301 (2006).
    • (2006) Phys. Rev. Lett , vol.96 , pp. 218301
    • Manosas, M.1    Collin, D.2    Ritort, F.3
  • 87
    • 0037304678 scopus 로고    scopus 로고
    • Relating single-molecule measurements to thermodynamics
    • D. Keller, D. Swigon, and C. Bustamante, Relating single-molecule measurements to thermodynamics. Biophys. J. 84, 733-738 (2003).
    • (2003) Biophys. J , vol.84 , pp. 733-738
    • Keller, D.1    Swigon, D.2    Bustamante, C.3
  • 88
    • 17844397196 scopus 로고    scopus 로고
    • Thermodynamic and kinetic aspects of RNA pulling experiments
    • M. Manosas and F. Ritort, Thermodynamic and kinetic aspects of RNA pulling experiments. Biophys. J. 88, 3224-3242 (2005).
    • (2005) Biophys. J , vol.88 , pp. 3224-3242
    • Manosas, M.1    Ritort, F.2
  • 89
    • 34247640029 scopus 로고    scopus 로고
    • J. D. Wen, M. Manosas, P. T. X. Li, S. B. Smith, C. Bustamante, F. Ritort, and I. Tinoco, Jr., Mechanical unfolding of single RNA hairpins. I. Effect of machine setup on kinetics. Biophys. J. 92, 2996-3009 (2007).
    • J. D. Wen, M. Manosas, P. T. X. Li, S. B. Smith, C. Bustamante, F. Ritort, and I. Tinoco, Jr., Mechanical unfolding of single RNA hairpins. I. Effect of machine setup on kinetics. Biophys. J. 92, 2996-3009 (2007).
  • 92
    • 0037058902 scopus 로고    scopus 로고
    • The effect of force on thermodynamics and kinetics of single molecule reactions
    • I. Tinoco, Jr. and C. Bustamante, The effect of force on thermodynamics and kinetics of single molecule reactions. Biophys. Chem. 102, 513-533 (2002).
    • (2002) Biophys. Chem , vol.102 , pp. 513-533
    • Tinoco Jr., I.1    Bustamante, C.2
  • 93
    • 2942592663 scopus 로고    scopus 로고
    • Force as a useful variable in reactions: Unfolding RNA
    • I. Tinoco, Jr., Force as a useful variable in reactions: unfolding RNA. Ann. Rev. Biophys. Biomol. Struct. 33, 363-385 (2004).
    • (2004) Ann. Rev. Biophys. Biomol. Struct , vol.33 , pp. 363-385
    • Tinoco Jr., I.1
  • 94
    • 0035957434 scopus 로고    scopus 로고
    • Free-energy reconstruction from nonequilibrium single-molecule experiments
    • G. Hummer and A. Szabo, Free-energy reconstruction from nonequilibrium single-molecule experiments. Proc. Natl. Acad. Sci. USA 98, 3658-3661 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 3658-3661
    • Hummer, G.1    Szabo, A.2
  • 95
    • 0035957335 scopus 로고    scopus 로고
    • How does a system respond when driven away from thermal equilibrium?
    • C. Jarzynski, How does a system respond when driven away from thermal equilibrium? Proc. Natl. Acad. Sci. USA 98, 3636-3638 (2001).
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 3636-3638
    • Jarzynski, C.1
  • 96
    • 0347568172 scopus 로고    scopus 로고
    • Equalities for the nonequilibrium work transferred from an external potential to a molecular system: Analysis of single-molecule extension experiments
    • J. M. Schurr and B. S. Fujimoto, Equalities for the nonequilibrium work transferred from an external potential to a molecular system: analysis of single-molecule extension experiments. J. Phys. Chem. B 107, 14007-14019 (2003).
    • (2003) J. Phys. Chem. B , vol.107 , pp. 14007-14019
    • Schurr, J.M.1    Fujimoto, B.S.2
  • 97
    • 19944370453 scopus 로고    scopus 로고
    • An experimental test of the Jarzynski equality in a mechanical experiment
    • F. Douarche, S. Ciliberto, and A. Petrosyan, An experimental test of the Jarzynski equality in a mechanical experiment. Europhys. Lett. 70, 593-598 (2005).
    • (2005) Europhys. Lett , vol.70 , pp. 593-598
    • Douarche, F.1    Ciliberto, S.2    Petrosyan, A.3
  • 98
    • 26244432051 scopus 로고    scopus 로고
    • Estimate of the free energy difference in mechanical systems from work fluctuations: Experiments and models
    • P
    • F. Douarche, S. Ciliberto, and A. Petrosyan, Estimate of the free energy difference in mechanical systems from work fluctuations: experiments and models. J. Stat. Mechanics (Theor. Exp.), P09011 (2005).
    • (2005) J. Stat. Mechanics (Theor. Exp.) , pp. 09011
    • Douarche, F.1    Ciliberto, S.2    Petrosyan, A.3
  • 99
    • 0034844254 scopus 로고    scopus 로고
    • Force-induced denaturation of RNA
    • U. Gerland, R. Bundschuh, and T. Hwa, Force-induced denaturation of RNA. Biophys. J. 81, 1324-1332 (2001).
    • (2001) Biophys. J , vol.81 , pp. 1324-1332
    • Gerland, U.1    Bundschuh, R.2    Hwa, T.3
  • 100
    • 0037036070 scopus 로고    scopus 로고
    • Equilibrium information from nonequilibrium measurements in an experimental test of the Jarzynski equality
    • J. Liphardt, S. Dumont, S. B. Smith, I. Tinoco, Jr., and C. Bustamante, Equilibrium information from nonequilibrium measurements in an experimental test of the Jarzynski equality. Science 296, 1833-1835 (2002).
    • (2002) Science , vol.296 , pp. 1833-1835
    • Liphardt, J.1    Dumont, S.2    Smith, S.B.3    Tinoco Jr., I.4    Bustamante, C.5
  • 101
    • 0037109040 scopus 로고    scopus 로고
    • F. Ritort, C. Bustamante, and I. Tinoco, Jr., A two-state kinetic model for the unfolding of single molecales by mechanical force. Proc. Natl. Acad. Sci. USA 99, 13544-13548 (2002).
    • F. Ritort, C. Bustamante, and I. Tinoco, Jr., A two-state kinetic model for the unfolding of single molecales by mechanical force. Proc. Natl. Acad. Sci. USA 99, 13544-13548 (2002).
  • 102
    • 24644450199 scopus 로고    scopus 로고
    • Verification of the crooks fluctuation theorem and recovery of RNA folding free energies
    • D. Collin, F. Ritort, C. Jarzynski, S. B. Smith, I. Tinoco, Jr., and C. Bustamante, Verification of the crooks fluctuation theorem and recovery of RNA folding free energies. Nature 437, 231-234 (2005).
    • (2005) Nature , vol.437 , pp. 231-234
    • Collin, D.1    Ritort, F.2    Jarzynski, C.3    Smith, S.B.4    Tinoco Jr., I.5    Bustamante, C.6
  • 103
    • 0242268467 scopus 로고    scopus 로고
    • Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements
    • J. Gore, F. Ritort, and C. Bustamante, Bias and error in estimates of equilibrium free-energy differences from nonequilibrium measurements. Proc. Natl. Acad. Sci. USA 100, 12564-12569 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 12564-12569
    • Gore, J.1    Ritort, F.2    Bustamante, C.3
  • 104
    • 0001489180 scopus 로고
    • Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: Sample-size hysteresis
    • R. H. Wood, W. C. F. Miihlbauer, and P. T. Thompson, Systematic errors in free energy perturbation calculations due to a finite sample of configuration space: sample-size hysteresis. J. Phys. Chem. 95, 6670-6675 (1991).
    • (1991) J. Phys. Chem , vol.95 , pp. 6670-6675
    • Wood, R.H.1    Miihlbauer, W.C.F.2    Thompson, P.T.3
  • 105
    • 18744379822 scopus 로고    scopus 로고
    • Theory of systematic computational error in free energy differences
    • D. M. Zuckermann and T. B. Woolf, Theory of systematic computational error in free energy differences. Phys. Rev. Lett. 89, 180602 (2002).
    • (2002) Phys. Rev. Lett , vol.89 , pp. 180602
    • Zuckermann, D.M.1    Woolf, T.B.2
  • 106
    • 0035312645 scopus 로고    scopus 로고
    • Steered molecular dynamics and mechanical functions of proteins
    • B. Isralewitz, M. Gao, and K. Schulten, Steered molecular dynamics and mechanical functions of proteins. Curr. Opin. Struct. Biol. 11, 224-230 (2001).
    • (2001) Curr. Opin. Struct. Biol , vol.11 , pp. 224-230
    • Isralewitz, B.1    Gao, M.2    Schulten, K.3
  • 108
    • 0042885340 scopus 로고    scopus 로고
    • Free-energy calculation from steered molecular dynamics simulations using Jarzynski's equality
    • S. Park, F. Khalili-Araghi, E. Tajkhorshid, and K. Schulten, Free-energy calculation from steered molecular dynamics simulations using Jarzynski's equality. J. Phys. Chem. B 119, 3559-3566 (2003).
    • (2003) J. Phys. Chem. B , vol.119 , pp. 3559-3566
    • Park, S.1    Khalili-Araghi, F.2    Tajkhorshid, E.3    Schulten, K.4
  • 109
    • 0037439853 scopus 로고    scopus 로고
    • Self-guided enhanced sampling methods for thermodynamic averages
    • I. Anddocioaei, A. R. Dinner, and M. Karplus, Self-guided enhanced sampling methods for thermodynamic averages. J. Chem. Phys. 118, 1074-1084 (2003).
    • (2003) J. Chem. Phys , vol.118 , pp. 1074-1084
    • Anddocioaei, I.1    Dinner, A.R.2    Karplus, M.3
  • 110
    • 4143087050 scopus 로고    scopus 로고
    • Calculating potentials of mean force from steered molecular dynamics simulation
    • S. Park and K. Schulten, Calculating potentials of mean force from steered molecular dynamics simulation. J. Chem. Phys. 13, 5946-5961 (2004).
    • (2004) J. Chem. Phys , vol.13 , pp. 5946-5961
    • Park, S.1    Schulten, K.2
  • 111
    • 23744478437 scopus 로고    scopus 로고
    • Free-energy surfaces from single-molecule force spectroscopy
    • G. Hummer and A. Szabo, Free-energy surfaces from single-molecule force spectroscopy. Acc. Chem. Res. 38, 504-513 (2005).
    • (2005) Acc. Chem. Res , vol.38 , pp. 504-513
    • Hummer, G.1    Szabo, A.2
  • 112
    • 0035333627 scopus 로고    scopus 로고
    • Fast-growth thermodynamic integration: Error and efficiency analysis
    • G. Hummer, Fast-growth thermodynamic integration: error and efficiency analysis. J. Chem. Phys. 114, 7330-7337 (2001).
    • (2001) J. Chem. Phys , vol.114 , pp. 7330-7337
    • Hummer, G.1
  • 113
    • 0035826435 scopus 로고    scopus 로고
    • A "fast growth" method of computing free-energy differences
    • D. A. Hendrix and C. Jarzynski, A "fast growth" method of computing free-energy differences. J. Chem. Phys. 114, 5974-5981 (2001).
    • (2001) J. Chem. Phys , vol.114 , pp. 5974-5981
    • Hendrix, D.A.1    Jarzynski, C.2
  • 114
    • 0037122460 scopus 로고    scopus 로고
    • Overcoming finite-sampling errors in fast-switching free-energy estimates: Extrapolative analysis of a molecular system
    • D. M. Zuckermann and T. B. Woolf, Overcoming finite-sampling errors in fast-switching free-energy estimates: extrapolative analysis of a molecular system. Chem. Phys. Lett. 351,445-453 (2002).
    • (2002) Chem. Phys. Lett , vol.351 , pp. 445-453
    • Zuckermann, D.M.1    Woolf, T.B.2
  • 115
    • 19644401497 scopus 로고    scopus 로고
    • Probing molecular free energy landscapes by periodic loading
    • O. Braun, A. Hanke, and U. Seifert, Probing molecular free energy landscapes by periodic loading. Phys. Rev. Lett. 93, 158105 (2004).
    • (2004) Phys. Rev. Lett , vol.93 , pp. 158105
    • Braun, O.1    Hanke, A.2    Seifert, U.3
  • 116
    • 84856384872 scopus 로고    scopus 로고
    • Evaluation of free energy landscapes from manipulation experiments
    • P
    • A. Imparato and L. Peliti, Evaluation of free energy landscapes from manipulation experiments. J. Stat. Mechanics (Theor. Exp.), P03005 (2006).
    • (2006) J. Stat. Mechanics (Theor. Exp.) , pp. 03005
    • Imparato, A.1    Peliti, L.2
  • 117
    • 84901026519 scopus 로고    scopus 로고
    • Work and heat fluctuations in two-state systems: A trajectory thermodynamics formalism
    • P
    • F. Ritort, Work and heat fluctuations in two-state systems: a trajectory thermodynamics formalism. J. Stat. Mechanics (Theor. Exp.), P10016 (2004).
    • (2004) J. Stat. Mechanics (Theor. Exp.) , pp. 10016
    • Ritort, F.1
  • 118
    • 33645666178 scopus 로고    scopus 로고
    • Rare events and the convergence of exponentially averaged work values
    • C. Jarzynski, Rare events and the convergence of exponentially averaged work values. Phys. Rev. E 73, 046105 (2006).
    • (2006) Phys. Rev. E , vol.73 , pp. 046105
    • Jarzynski, C.1
  • 119
    • 33749551180 scopus 로고    scopus 로고
    • Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski equality
    • I. Kosztin, B. Barz, and L. Janosi, Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski equality. J. Chem. Phys. 124, 064106 (2006).
    • (2006) J. Chem. Phys , vol.124 , pp. 064106
    • Kosztin, I.1    Barz, B.2    Janosi, L.3
  • 120
    • 23944504317 scopus 로고    scopus 로고
    • Determination of the chemical potential using energy-biased sampling
    • R. Delgado-Buscaiolini, G. De Fabritiis, and P. V. Coveney, Determination of the chemical potential using energy-biased sampling. J. Chem. Phys. 123, 054105 (2005).
    • (2005) J. Chem. Phys , vol.123 , pp. 054105
    • Delgado-Buscaiolini, R.1    De Fabritiis, G.2    Coveney, P.V.3
  • 121
    • 5244304444 scopus 로고
    • Efficient estimation of free-energy differences from Monte Carlo data
    • C. H. Bennett, Efficient estimation of free-energy differences from Monte Carlo data. J. Comput. Phys. 22, 245-268 (1976).
    • (1976) J. Comput. Phys , vol.22 , pp. 245-268
    • Bennett, C.H.1
  • 122
    • 0242677537 scopus 로고    scopus 로고
    • Equilibrium free energies from nonequilibrium measurements using maximum-likelihood methods
    • M. R. Shirts, E. Bair, G. Hooker, and V. S. Pande, Equilibrium free energies from nonequilibrium measurements using maximum-likelihood methods. Phys. Rev. Lett. 91, 140601 (2003).
    • (2003) Phys. Rev. Lett , vol.91 , pp. 140601
    • Shirts, M.R.1    Bair, E.2    Hooker, G.3    Pande, V.S.4
  • 123
    • 33645010025 scopus 로고    scopus 로고
    • Optimal estimates of free energy estimates from multi-state nonequilibrium work data
    • P. Maragakis, M. Spithchy, and M. Karplus, Optimal estimates of free energy estimates from multi-state nonequilibrium work data. Phys. Rev. Lett. 96, 100602 (2006).
    • (2006) Phys. Rev. Lett , vol.96 , pp. 100602
    • Maragakis, P.1    Spithchy, M.2    Karplus, M.3
  • 124
    • 17444396742 scopus 로고    scopus 로고
    • Practical applicability of the Jarzynski relation in statistical mechanics: A pedagogical example
    • R. C. Lhua and A. Y. Grossberg, Practical applicability of the Jarzynski relation in statistical mechanics: a pedagogical example. J. Phys. Chem. B 109, 6805-6811 (2005).
    • (2005) J. Phys. Chem. B , vol.109 , pp. 6805-6811
    • Lhua, R.C.1    Grossberg, A.Y.2
  • 125
    • 25444474764 scopus 로고    scopus 로고
    • Jarzynski equality for the Jepsen gas
    • I. Bena, C. Van den Broeck, and R. Kawai, Jarzynski equality for the Jepsen gas. Europhys. Lett. 71, 879-885 (2005).
    • (2005) Europhys. Lett , vol.71 , pp. 879-885
    • Bena, I.1    Van den Broeck, C.2    Kawai, R.3
  • 126
    • 17444371713 scopus 로고    scopus 로고
    • Dissipated work in driven harmonic diffusive systems: General solution and application to stretching rouse polymers
    • T. Speck and U. Seifert, Dissipated work in driven harmonic diffusive systems: general solution and application to stretching rouse polymers. Eur. Phys. J. B 43, 521-527 (2005).
    • (2005) Eur. Phys. J. B , vol.43 , pp. 521-527
    • Speck, T.1    Seifert, U.2
  • 127
    • 33847258819 scopus 로고    scopus 로고
    • On the work distribution for the adiabatic compression of a dilute classical gas
    • G. E. Crooks and C. Jarzynski, On the work distribution for the adiabatic compression of a dilute classical gas. Phys. Rev. E 75, 021116 (2007).
    • (2007) Phys. Rev. E , vol.75 , pp. 021116
    • Crooks, G.E.1    Jarzynski, C.2
  • 128
    • 33144468230 scopus 로고    scopus 로고
    • Fluctuation and dissipation of work in a Joule experiment
    • B. Cleuren, C. Van den Broeck, and R. Kawai, Fluctuation and dissipation of work in a Joule experiment. Phys. Rev. Lett. 96, 050601 (2006).
    • (2006) Phys. Rev. Lett , vol.96 , pp. 050601
    • Cleuren, B.1    Van den Broeck, C.2    Kawai, R.3
  • 129
    • 0347193736 scopus 로고
    • Reaction-rate theory: Fifty years after Kramers
    • P. Hanggi, P. Talkner, and M. Borkovec, Reaction-rate theory: fifty years after Kramers. Rev. Mod. Phys. 62, 251-341 (1990).
    • (1990) Rev. Mod. Phys , vol.62 , pp. 251-341
    • Hanggi, P.1    Talkner, P.2    Borkovec, M.3
  • 130
    • 0002652153 scopus 로고
    • The Kramers problem: Fifty years of development
    • V. I. Melnikov, The Kramers problem: fifty years of development. Phys. Rep. 209, 1-71 (1991).
    • (1991) Phys. Rep , vol.209 , pp. 1-71
    • Melnikov, V.I.1
  • 131
    • 0034979287 scopus 로고    scopus 로고
    • Probing the relationship between force, lifetime, and chemistry in single molecular bonds
    • E. Evans, Probing the relationship between force, lifetime, and chemistry in single molecular bonds. Ann. Rev. Biophys. Biomol. Struct. 30, 105-128 (2001).
    • (2001) Ann. Rev. Biophys. Biomol. Struct , vol.30 , pp. 105-128
    • Evans, E.1
  • 132
    • 1542381278 scopus 로고    scopus 로고
    • Dynamic force spectroscopy
    • H. Flyvbjerg, F. Jülicher, P. Ormos, and F. David, eds, Springer-Verlag, Berlin
    • E. Evans and P. Williams, Dynamic force spectroscopy, in Physics of Bomolecules and Cells, Vol. LXXV (H. Flyvbjerg, F. Jülicher, P. Ormos, and F. David, eds.) Springer-Verlag, Berlin, 2002, pp. 145-204.
    • (2002) Physics of Bomolecules and Cells , vol.75 , pp. 145-204
    • Evans, E.1    Williams, P.2
  • 133
    • 20744445985 scopus 로고    scopus 로고
    • Work distribution and path integrals in mean-field systems
    • A. Imparato and L. Peliti, Work distribution and path integrals in mean-field systems. Europhys. Lett. 70, 740-746 (2005).
    • (2005) Europhys. Lett , vol.70 , pp. 740-746
    • Imparato, A.1    Peliti, L.2
  • 134
    • 33244482631 scopus 로고    scopus 로고
    • Work probability distribution in systems driven out of equilibrium
    • A. Imparato and L. Peliti, Work probability distribution in systems driven out of equilibrium. Phys. Rev. E 72, 046114 (2005).
    • (2005) Phys. Rev. E , vol.72 , pp. 046114
    • Imparato, A.1    Peliti, L.2
  • 135
    • 42749107675 scopus 로고    scopus 로고
    • Free energy funcfional for nonequilibrium systems: An exactly solvable case
    • B. Derrida, J. L. Lebowitz, and E. R. Speer, Free energy funcfional for nonequilibrium systems: an exactly solvable case. Phys. Rev. Lett. 87, 150601 (2001).
    • (2001) Phys. Rev. Lett , vol.87 , pp. 150601
    • Derrida, B.1    Lebowitz, J.L.2    Speer, E.R.3
  • 136
    • 39649109333 scopus 로고    scopus 로고
    • Large deviation of the density profile in the symmetric simple exclusion process
    • B. Derrida, J. L. Lebowitz, and E. R. Speer, Large deviation of the density profile in the symmetric simple exclusion process, J. Stat. Phys. 107, 5994-634 (2002).
    • (2002) J. Stat. Phys , vol.107 , pp. 5994-6634
    • Derrida, B.1    Lebowitz, J.L.2    Speer, E.R.3
  • 137
    • 0037273792 scopus 로고    scopus 로고
    • Exact large deviation functional of a stationary open driven diffusive system: The asymmetric exclusion process
    • B. Derrida, J. L. Lebowitz, and E. R. Speer, Exact large deviation functional of a stationary open driven diffusive system: the asymmetric exclusion process. J. Stat. Phys. 110, 775-810 (2003).
    • (2003) J. Stat. Phys , vol.110 , pp. 775-810
    • Derrida, B.1    Lebowitz, J.L.2    Speer, E.R.3
  • 138
    • 33645525254 scopus 로고    scopus 로고
    • Direct evaluation of large-deviation functions
    • C. Giardina, J. Kurchan, and L. Peliti, Direct evaluation of large-deviation functions. Phys. Rev. Lett. 96, 120603 (2006).
    • (2006) Phys. Rev. Lett , vol.96 , pp. 120603
    • Giardina, C.1    Kurchan, J.2    Peliti, L.3
  • 139
    • 4243104032 scopus 로고
    • Models of the glass transition
    • J. Jackle, Models of the glass transition. Rep. Prog. Phys. 49, 171-231 (1986).
    • (1986) Rep. Prog. Phys , vol.49 , pp. 171-231
    • Jackle, J.1
  • 140
    • 0009071257 scopus 로고
    • Formation of glasses from liquids and biopolymers
    • C. A. Angell, Formation of glasses from liquids and biopolymers. Science 267, 1924-1935 (1995).
    • (1995) Science , vol.267 , pp. 1924-1935
    • Angell, C.A.1
  • 141
    • 0030217476 scopus 로고    scopus 로고
    • Supercooled liquids and glasses
    • M. D. Ediger, C. A. Angell, and S. R. Nagel, Supercooled liquids and glasses. J. Phys. Chem. 100, 13200-13212 (1996).
    • (1996) J. Phys. Chem , vol.100 , pp. 13200-13212
    • Ediger, M.D.1    Angell, C.A.2    Nagel, S.R.3
  • 142
    • 39649116797 scopus 로고    scopus 로고
    • Proceedings of the Trieste Workshop unifying concepts in glassy physiscs. J. Phys. (Condensed Matter), 12 (1999).
    • Proceedings of the Trieste Workshop unifying concepts in glassy physiscs. J. Phys. (Condensed Matter), 12 (1999).
  • 143
    • 0002055106 scopus 로고    scopus 로고
    • Spatially heterogeneous dynamics in supercooled liquids
    • M. D. Ediger, Spatially heterogeneous dynamics in supercooled liquids. Annu. Rev. Phys. Chem. 51, 99-128 (2000).
    • (2000) Annu. Rev. Phys. Chem , vol.51 , pp. 99-128
    • Ediger, M.D.1
  • 146
    • 0038442839 scopus 로고    scopus 로고
    • Violations of the fluctuation dissipation in glassy systems: Basic notions and the numerical evidence
    • A. Crisanti and F. Ritort, Violations of the fluctuation dissipation in glassy systems: basic notions and the numerical evidence. J. Phys. A 36, R181-R290 (2003).
    • (2003) J. Phys. A , vol.36
    • Crisanti, A.1    Ritort, F.2
  • 147
    • 3042833476 scopus 로고    scopus 로고
    • Diverging length scale and upper critical dimension in the mode coupling theory of the glass transition
    • G. Biroli and J. P. Bouchaud, Diverging length scale and upper critical dimension in the mode coupling theory of the glass transition. Europhys. Lett. 67, 21 (2004).
    • (2004) Europhys. Lett , vol.67 , pp. 21
    • Biroli, G.1    Bouchaud, J.P.2
  • 149
    • 0003975020 scopus 로고    scopus 로고
    • A. P. Young ed, World Scientific, Singapore
    • A. P. Young (ed), Spin Glasses and Random Fields. World Scientific, Singapore, 1998.
    • (1998) Spin Glasses and Random Fields
  • 150
    • 0001467647 scopus 로고
    • Self induced quenched disorder: A model for the glass transition
    • J. P. Bouchaud and M. Mezard, Self induced quenched disorder: a model for the glass transition. J. Phys. I (France) 4, 1109-1114 (1994).
    • (1994) J. Phys. I (France) , vol.4 , pp. 1109-1114
    • Bouchaud, J.P.1    Mezard, M.2
  • 151
    • 21844488190 scopus 로고
    • Replica field theory for deterministic models. I. Binary sequences with low autocorrelation
    • E. Marinari, G. Parisi, and F. Ritort, Replica field theory for deterministic models. I. Binary sequences with low autocorrelation. J. Phys. A 27, 7615-7646 (1994).
    • (1994) J. Phys. A , vol.27 , pp. 7615-7646
    • Marinari, E.1    Parisi, G.2    Ritort, F.3
  • 153
    • 0001746126 scopus 로고
    • Glassy transition and aging in a model without disorder
    • S. Franz and J. Hertz, Glassy transition and aging in a model without disorder. Phys. Rev. Lett. 74, 2114-2117 (1995).
    • (1995) Phys. Rev. Lett , vol.74 , pp. 2114-2117
    • Franz, S.1    Hertz, J.2
  • 154
    • 0034724414 scopus 로고    scopus 로고
    • Fragilities of liquids predicted from the random first order transition theory of glasses
    • X. Xia and P. G. Wolynes, Fragilities of liquids predicted from the random first order transition theory of glasses. Proc. Natl. Acad. Sci. USA 97, 2990-2994 (2000).
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 2990-2994
    • Xia, X.1    Wolynes, P.G.2
  • 155
    • 0037138166 scopus 로고    scopus 로고
    • A glass transition scenario based on heterogeneities and entropy barriers
    • A. Crisanti and F. Ritort, A glass transition scenario based on heterogeneities and entropy barriers. Philos. Mag. B 82, 143-149 (2002).
    • (2002) Philos. Mag. B , vol.82 , pp. 143-149
    • Crisanti, A.1    Ritort, F.2
  • 156
    • 0042191889 scopus 로고    scopus 로고
    • Coarse-grained microscopic models of glass formers
    • J. P. Gartahan and D. Chandler, Coarse-grained microscopic models of glass formers. Proc. Natl. Acad. Sci. USA 100, 9710-9714 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9710-9714
    • Gartahan, J.P.1    Chandler, D.2
  • 157
    • 8444220523 scopus 로고    scopus 로고
    • On the Adam-Gibbs-Kirkpatrick-Thirumalai-Wolynes scenario for the viscosity increase in glasses
    • G. Biroli and J. P. Bouchaud, On the Adam-Gibbs-Kirkpatrick-Thirumalai-Wolynes scenario for the viscosity increase in glasses. J. Chem. Phys. 121, 7347-7354 (2004).
    • (2004) J. Chem. Phys , vol.121 , pp. 7347-7354
    • Biroli, G.1    Bouchaud, J.P.2
  • 158
    • 28844469562 scopus 로고    scopus 로고
    • Mode dependent nonequilibrium temperatures in aging systems
    • A. Garriga and F. Ritort, Mode dependent nonequilibrium temperatures in aging systems. Phys. Rev. E 72, 031505 (2005).
    • (2005) Phys. Rev. E , vol.72 , pp. 031505
    • Garriga, A.1    Ritort, F.2
  • 159
    • 0742294357 scopus 로고
    • Nature of the glass transition and the glassy state
    • J. H. Gibbs and E. A. DiMarzio, Nature of the glass transition and the glassy state. J. Chem. Phys. 28, 373-383 (1958).
    • (1958) J. Chem. Phys , vol.28 , pp. 373-383
    • Gibbs, J.H.1    DiMarzio, E.A.2
  • 160
    • 0347936294 scopus 로고
    • On the temperature dependence of cooperative relaxation properties in glass-forming liquids
    • G. Adam and J. H. Gibbs, On the temperature dependence of cooperative relaxation properties in glass-forming liquids. J. Chem. Phys. 43, 139-146 (1965).
    • (1965) J. Chem. Phys , vol.43 , pp. 139-146
    • Adam, G.1    Gibbs, J.H.2
  • 161
    • 0043087079 scopus 로고
    • Analytical solution of the off-equilibrium dynamics of a long-range spin-glass model
    • L. F. Cugliandolo and J. Kurchan, Analytical solution of the off-equilibrium dynamics of a long-range spin-glass model. Phys. Rev. Lett. 71, 173-176 (1993).
    • (1993) Phys. Rev. Lett , vol.71 , pp. 173-176
    • Cugliandolo, L.F.1    Kurchan, J.2
  • 162
    • 84953980214 scopus 로고
    • Weak ergodicity breaking in mean-field spin-glass models
    • L. F. Cugliandolo and J. Kurchan, Weak ergodicity breaking in mean-field spin-glass models. Philos. Mag. B 71, 501-514 (1995).
    • (1995) Philos. Mag. B , vol.71 , pp. 501-514
    • Cugliandolo, L.F.1    Kurchan, J.2
  • 163
    • 0000080861 scopus 로고    scopus 로고
    • Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics
    • L. F. Cugliandolo, J. Kurchan, and L. Peliti, Energy flow, partial equilibration, and effective temperatures in systems with slow dynamics. Phys. Rev. E 55, 3898-914 (1997).
    • (1997) Phys. Rev. E , vol.55 , pp. 3898-3914
    • Cugliandolo, L.F.1    Kurchan, J.2    Peliti, L.3
  • 164
  • 165
    • 21844487054 scopus 로고
    • Replica field theory for deterministic models, II. A non-random spin glass with glassy behaviour
    • E. Marinari, G. Parisi, and F. Ritort, Replica field theory for deterministic models, II. A non-random spin glass with glassy behaviour. J. Phys. A 27, 7647-7668 (1994).
    • (1994) J. Phys. A , vol.27 , pp. 7647-7668
    • Marinari, E.1    Parisi, G.2    Ritort, F.3
  • 166
  • 167
    • 0004986545 scopus 로고
    • Relaxation processes in supercooled liquids
    • W. Gotze and L. Sjogren, Relaxation processes in supercooled liquids. Rep. Prog. Phys. 55, 241-376 (1992).
    • (1992) Rep. Prog. Phys , vol.55 , pp. 241-376
    • Gotze, W.1    Sjogren, L.2
  • 168
    • 35949021286 scopus 로고
    • Random-energy model: Limit of a family of disordered models
    • B. Derrida, Random-energy model: limit of a family of disordered models. Phys. Rev. Lett. 45, 79-82 (1980).
    • (1980) Phys. Rev. Lett , vol.45 , pp. 79-82
    • Derrida, B.1
  • 169
    • 4243861085 scopus 로고
    • Random-energy model: An exactly solvable model of disordered systems
    • B. Derrida, Random-energy model: an exactly solvable model of disordered systems. Phys. Rev. B 24, 2613-2626 (1981).
    • (1981) Phys. Rev. B , vol.24 , pp. 2613-2626
    • Derrida, B.1
  • 170
    • 0001240288 scopus 로고
    • Spin glasses with p-spin interactions
    • E. Gardner, Spin glasses with p-spin interactions. Nuclear Phys. B, 747-765 (1985).
    • (1985) Nuclear Phys. B , pp. 747-765
    • Gardner, E.1
  • 171
    • 21844511577 scopus 로고
    • Some non-perturbative calculations on spin glasses
    • M. Campellone. Some non-perturbative calculations on spin glasses. J. Phys. A 28, 2149-2158 (1995).
    • (1995) J. Phys. A , vol.28 , pp. 2149-2158
    • Campellone, M.1
  • 172
    • 21844513008 scopus 로고
    • On the static and dynamical transition in the mean-field Potts glass
    • E. De Santis, G. Parisi and F. Ritort, On the static and dynamical transition in the mean-field Potts glass. J. Phys. A 28, 3025-3041 (1995).
    • (1995) J. Phys. A , vol.28 , pp. 3025-3041
    • De Santis, E.1    Parisi, G.2    Ritort, F.3
  • 173
    • 30244435648 scopus 로고    scopus 로고
    • Mode-coupling approximations, glass theory and disordered systems
    • J.-P. Bouchaud, L. F. Cugliandolo, J. Kurchan, and M. Mezard. Mode-coupling approximations, glass theory and disordered systems. Physica A 226, 243-73 (1996).
    • (1996) Physica A , vol.226 , pp. 243-273
    • Bouchaud, J.-P.1    Cugliandolo, L.F.2    Kurchan, J.3    Mezard, M.4
  • 174
    • 2942680923 scopus 로고
    • Viscous liquids and the glass transition: A potential energy barrier picture
    • M. Goldstein, Viscous liquids and the glass transition: a potential energy barrier picture. J. Phys. Chem. 51, 3728-3739 (1969).
    • (1969) J. Phys. Chem , vol.51 , pp. 3728-3739
    • Goldstein, M.1
  • 175
    • 4243492437 scopus 로고
    • Hidden structure in liquids
    • F. H. Stillinger and T. A. Weber, Hidden structure in liquids. Phys. Rev. A 25, 978-989 (1982).
    • (1982) Phys. Rev. A , vol.25 , pp. 978-989
    • Stillinger, F.H.1    Weber, T.A.2
  • 176
    • 33750198842 scopus 로고
    • Statistical-mechanics of metastable matter - superheated and stretched liquids
    • F. H. Stillinger, Statistical-mechanics of metastable matter - superheated and stretched liquids. Phys. Rev. E 52, 4685-4690 (1995).
    • (1995) Phys. Rev. E , vol.52 , pp. 4685-4690
    • Stillinger, F.H.1
  • 177
    • 0034636648 scopus 로고    scopus 로고
    • Potential energy landscape of finite-size mean-field models for glasses
    • A. Crisanti and F. Ritort, Potential energy landscape of finite-size mean-field models for glasses. Europhys. Lett. 51, 147 (2000).
    • (2000) Europhys. Lett , vol.51 , pp. 147
    • Crisanti, A.1    Ritort, F.2
  • 178
    • 0034638812 scopus 로고    scopus 로고
    • Activated processes and inherent structure dynamics of finite-size mean-field models for glasses
    • A. Crisanti and F. Ritort, Activated processes and inherent structure dynamics of finite-size mean-field models for glasses. Europhys. Lett. 52, 640 (2000).
    • (2000) Europhys. Lett , vol.52 , pp. 640
    • Crisanti, A.1    Ritort, F.2
  • 179
    • 0034229395 scopus 로고    scopus 로고
    • Equilibrium and ageing dynamics of simple models for glasses
    • A. Crisanti and F. Ritort, Equilibrium and ageing dynamics of simple models for glasses. J. Phys. (Condensed Matter) 12, 6413-6422 (2000).
    • (2000) J. Phys. (Condensed Matter) , vol.12 , pp. 6413-6422
    • Crisanti, A.1    Ritort, F.2
  • 180
    • 0037169699 scopus 로고    scopus 로고
    • Inherent structures, configurational entropy and slow glassy dynamics
    • A. Crisanti and F. Ritort, Inherent structures, configurational entropy and slow glassy dynamics. J. Phys. (Condensed Matter) 14, 1381-1395 (2002).
    • (2002) J. Phys. (Condensed Matter) , vol.14 , pp. 1381-1395
    • Crisanti, A.1    Ritort, F.2
  • 181
    • 0037017288 scopus 로고    scopus 로고
    • Observable dependence of fluctuation-dissipation relations and effective temperatures
    • S. M. Fielding and P. Sollich, Observable dependence of fluctuation-dissipation relations and effective temperatures. Phys. Rev. Lett. 88, 050603 (2002).
    • (2002) Phys. Rev. Lett , vol.88 , pp. 050603
    • Fielding, S.M.1    Sollich, P.2
  • 182
    • 0035124789 scopus 로고    scopus 로고
    • Extension of the fluctuation-dissipation theorem to the physical aging of a model glass-forming liquid
    • F. Sciortino and P. Tartaglia, Extension of the fluctuation-dissipation theorem to the physical aging of a model glass-forming liquid. Phys. Rev. Lett. 86, 107-110 (2001).
    • (2001) Phys. Rev. Lett , vol.86 , pp. 107-110
    • Sciortino, F.1    Tartaglia, P.2
  • 183
    • 1442307094 scopus 로고    scopus 로고
    • Crossover (or Kovacs) effect in anaging molecular liquid
    • S. Mossa and F. Sciortino, Crossover (or Kovacs) effect in anaging molecular liquid. Phys. Rev. Lett. 92, 045504 (2004).
    • (2004) Phys. Rev. Lett , vol.92 , pp. 045504
    • Mossa, S.1    Sciortino, F.2
  • 184
    • 0037014119 scopus 로고    scopus 로고
    • Potential energy landscape equation of state
    • E. La Nave, S. Mossa, and F. Sciortino, Potential energy landscape equation of state. Phys. Rev. Lett. 88, 225701 (2002).
    • (2002) Phys. Rev. Lett , vol.88 , pp. 225701
    • La Nave, E.1    Mossa, S.2    Sciortino, F.3
  • 186
    • 2142639331 scopus 로고    scopus 로고
    • Intermittency of glassy relaxation and the emergence of a nonequilibrium spontanoeus measure in the aging regime
    • A. Crisanti and F. Ritort, Intermittency of glassy relaxation and the emergence of a nonequilibrium spontanoeus measure in the aging regime. Europhys. Lett. 66, 253 (2004).
    • (2004) Europhys. Lett , vol.66 , pp. 253
    • Crisanti, A.1    Ritort, F.2
  • 187
    • 84903650969 scopus 로고    scopus 로고
    • Stimulated and spontaneous relaxation in glassy systems
    • A. Fierro A. Coniglio, and H. Hermann, eds, Springer-Verlag, New York
    • F. Ritort, Stimulated and spontaneous relaxation in glassy systems, in Unifying Concepts in Granular Media and Glassy Systems (A. Fierro A. Coniglio, and H. Hermann, eds.) Springer-Verlag, New York, 2004.
    • (2004) Unifying Concepts in Granular Media and Glassy Systems
    • Ritort, F.1
  • 188
    • 2942538095 scopus 로고    scopus 로고
    • Spontaneous relaxation in generalized oscillator models for glassy dynamics
    • F. Ritort, Spontaneous relaxation in generalized oscillator models for glassy dynamics. J. Phys. Chem. B 108, 6893-900 (2004).
    • (2004) J. Phys. Chem. B , vol.108 , pp. 6893-6900
    • Ritort, F.1
  • 189
    • 0035395918 scopus 로고    scopus 로고
    • Metastable states in glassy systems
    • G. Biroli and J. Kurchan, Metastable states in glassy systems. Phys. Rev. E 64, 016101 (2001).
    • (2001) Phys. Rev. E , vol.64 , pp. 016101
    • Biroli, G.1    Kurchan, J.2
  • 190
    • 0001609778 scopus 로고
    • Glassiness in a model without energy barriers
    • F. Ritort, Glassiness in a model without energy barriers. Phys. Rev. Lett. 75, 1190-1193 (1995).
    • (1995) Phys. Rev. Lett , vol.75 , pp. 1190-1193
    • Ritort, F.1
  • 191
    • 0032000850 scopus 로고    scopus 로고
    • Aging in the linear harmonic oscillator
    • L. L. Bonilla, F. G. Padilla, and F. Ritort, Aging in the linear harmonic oscillator. Physica A 250, 315-326 (1998).
    • (1998) Physica A , vol.250 , pp. 315-326
    • Bonilla, L.L.1    Padilla, F.G.2    Ritort, F.3
  • 193
    • 84901007317 scopus 로고    scopus 로고
    • Nonequilibrium work theorem for a system strongly coupled to a thermal environment
    • P
    • C. Jarzynski, Nonequilibrium work theorem for a system strongly coupled to a thermal environment. J. Stat. Mechanics (Theor. Exp.) P09005 (2004).
    • (2004) J. Stat. Mechanics (Theor. Exp.) , pp. 09005
    • Jarzynski, C.1
  • 194
    • 33746709601 scopus 로고    scopus 로고
    • The unreasonable effectiveness of equilibrium-like theory for interpreting nonequilibrium experiments
    • R. D. Astumian, The unreasonable effectiveness of equilibrium-like theory for interpreting nonequilibrium experiments. Am. J. Phys. 74, 683 (2006).
    • (2006) Am. J. Phys , vol.74 , pp. 683
    • Astumian, R.D.1
  • 195
    • 0004146634 scopus 로고
    • Cambridge University Press, Cambride, UK
    • E. Schrödinger, What Is Life? Cambridge University Press, Cambride, UK, 1967.
    • (1967) What Is Life
    • Schrödinger, E.1
  • 198
  • 199
    • 0042276566 scopus 로고    scopus 로고
    • H. Flyvbjerg, F. Jülicher, P. Ormos, and F. David edts, Springer, Berlin
    • H. Flyvbjerg, F. Jülicher, P. Ormos, and F. David (edts), Physics of Biomolecules and Cells, Volume Session LXXV, Springer, Berlin, 2002.
    • (2002) Physics of Biomolecules and Cells, Volume Session LXXV


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