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Volumn 119, Issue 6, 2003, Pages 3559-3566

Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality

Author keywords

[No Author keywords available]

Indexed keywords

APPROXIMATION THEORY; COMPUTER SIMULATION; CONFORMATIONS; DNA; EXPANSION; FREE ENERGY; NUMERICAL ANALYSIS; PHASE TRANSITIONS; THERMODYNAMIC PROPERTIES; VACUUM APPLICATIONS;

EID: 0042885340     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1590311     Document Type: Article
Times cited : (692)

References (39)
  • 4
    • 0041754408 scopus 로고    scopus 로고
    • edited by O. M. Becker, A. D. MacKerell, Jr., B. Roux, and M. Watanabe (Marcel Dekker, New York)
    • T. Simonson, in Computational Biochemistry and Biophysics, edited by O. M. Becker, A. D. MacKerell, Jr., B. Roux, and M. Watanabe (Marcel Dekker, New York, 2001), pp. 169-197.
    • (2001) Computational Biochemistry and Biophysics , pp. 169-197
    • Simonson, T.1
  • 33
    • 0041754406 scopus 로고    scopus 로고
    • note
    • Rotation around the z axis was not removed. Since we are interested in relative free energies, the removal of irrelevant degrees of freedom does not affect the result. It merely makes the analysis of trajectories easier.
  • 36
    • 0041754404 scopus 로고    scopus 로고
    • note
    • If the molecule is stretched further, the entropy will decrease again since the available configuration space will eventually reduce.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.