-
1
-
-
0034565966
-
Nucleocapsid protein of human immunodeficiency virus as a model protein with chaperoning functions and as a target for antiviral drugs
-
Darlix,J.L., Cristofari,O., Rau,M., Pechoux,C., Berthoux,L. and Roques,B. (2000) Nucleocapsid protein of human immunodeficiency virus as a model protein with chaperoning functions and as a target for antiviral drugs. Adv. Pharmacol., 48, 345-372.
-
(2000)
Adv. Pharmacol
, vol.48
, pp. 345-372
-
-
Darlix, J.L.1
Cristofari, O.2
Rau, M.3
Pechoux, C.4
Berthoux, L.5
Roques, B.6
-
2
-
-
0028904512
-
RNA secondary structure and binding sites for gag gene products in the 5′, packaging signal of human immunodeficiency virus type 1
-
Clever,J., Sassetti,C. and Parslow,T.G. (1995) RNA secondary structure and binding sites for gag gene products in the 5′, packaging signal of human immunodeficiency virus type 1. J. Virol., 69, 2101-2109.
-
(1995)
J. Virol
, vol.69
, pp. 2101-2109
-
-
Clever, J.1
Sassetti, C.2
Parslow, T.G.3
-
3
-
-
0026628854
-
Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers
-
De Rocquigny,H., Gabus,C., Vincent,A., Fournie-Zaluski,M.C., Roques,B, and Darlix,J.L. (1992) Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers. Proc. Natl Acad. Sci. USA, 89 6472-6476.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 6472-6476
-
-
De Rocquigny, H.1
Gabus, C.2
Vincent, A.3
Fournie-Zaluski, M.C.4
Roques, B.5
Darlix, J.L.6
-
4
-
-
2942594259
-
The chaperoning and assistance roles of the HIV-1 nucleocapsid protein in proviral DNA synthesis and maintenance
-
Bampi,C., Jacquenet,S., Lener,D., Decimo,D. and Darlix,J.L. (2004) The chaperoning and assistance roles of the HIV-1 nucleocapsid protein in proviral DNA synthesis and maintenance. Int. J. Biochem. Cell Biol. 36, 1668-1686.
-
(2004)
Int. J. Biochem. Cell Biol
, vol.36
, pp. 1668-1686
-
-
Bampi, C.1
Jacquenet, S.2
Lener, D.3
Decimo, D.4
Darlix, J.L.5
-
5
-
-
20344368389
-
How retroviruses select their genomes
-
D'Souza,V. and Summers,M.F. (2005) How retroviruses select their genomes. Nat. Rev. Microbiol., 3, 643-655.
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 643-655
-
-
D'Souza, V.1
Summers, M.F.2
-
6
-
-
0027220120
-
Mapping of functionally important residues of a cysteine-histidine box in the human immunodeficiency virus type 1 nucleocapsid protein
-
Dorfman,T., Luban,J., Goff,S.P., Haseltine,W.A. and Gottlinger,H.G. (1993) Mapping of functionally important residues of a cysteine-histidine box in the human immunodeficiency virus type 1 nucleocapsid protein. J. Virol., 67, 6159-6169.
-
(1993)
J. Virol
, vol.67
, pp. 6159-6169
-
-
Dorfman, T.1
Luban, J.2
Goff, S.P.3
Haseltine, W.A.4
Gottlinger, H.G.5
-
7
-
-
0033616530
-
Strict conservation of the retroviral nucleocapsid protein zinc finger is strongly influenced by its role in viral infection processes: Characterization of HIV-1 particles containing mutant nucleocapsid zinc-coordinating sequences
-
Gorelick,R.J., Gagliardi,T.D., Bosche,W.J., Wiltrout,T.A., Coren,L.V., Chabot,D.J., Lifson,J.D., Henderson,L.E. and Arthur,L.O. (1999) Strict conservation of the retroviral nucleocapsid protein zinc finger is strongly influenced by its role in viral infection processes: characterization of HIV-1 particles containing mutant nucleocapsid zinc-coordinating sequences. Virology, 256, 92-104.
-
(1999)
Virology
, vol.256
, pp. 92-104
-
-
Gorelick, R.J.1
Gagliardi, T.D.2
Bosche, W.J.3
Wiltrout, T.A.4
Coren, L.V.5
Chabot, D.J.6
Lifson, J.D.7
Henderson, L.E.8
Arthur, L.O.9
-
8
-
-
0033803461
-
Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer
-
Guo,J., Wu,T., Anderson,J., Kane,B.F., Johnson,D.G., Gorelick,R.J., Henderson,L.E. and Levin,J.G. (2000) Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer. J. Virol., 74, 8980-8988.
-
(2000)
J. Virol
, vol.74
, pp. 8980-8988
-
-
Guo, J.1
Wu, T.2
Anderson, J.3
Kane, B.F.4
Johnson, D.G.5
Gorelick, R.J.6
Henderson, L.E.7
Levin, J.G.8
-
9
-
-
0028858759
-
The central globular domain of the nucleocapsid protein of human immunodeficiency virus type 1 is critical for virion structure and infectivity
-
Ottmann,M., Gabus,C. and Darlix,J.L. (1995) The central globular domain of the nucleocapsid protein of human immunodeficiency virus type 1 is critical for virion structure and infectivity. J. Virol., 69 1778-1784.
-
(1995)
J. Virol
, vol.69
, pp. 1778-1784
-
-
Ottmann, M.1
Gabus, C.2
Darlix, J.L.3
-
10
-
-
2242469712
-
-
De GuzmanR.N., Wu,Z.R., Stalling,C.C., Pappalardo,L., Borer,P.N. and Summers,M.F. (1998) Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element. Science, 279, 384-388.
-
De GuzmanR.N., Wu,Z.R., Stalling,C.C., Pappalardo,L., Borer,P.N. and Summers,M.F. (1998) Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element. Science, 279, 384-388.
-
-
-
-
11
-
-
0032561130
-
-
Morellet,N., Demene,H., Teilleux,V., Huynh-Dinh,T., de Rocquigny,H., Fournie-Zaluski.M.C. and Roques,B.P. (1998) Structure of the complex between the HIV-1 nucleocapsid protein NCp7 and the single-stranded pentanucleotide d(ACGCC). J. Mol. Biol., 283, 419-434.
-
Morellet,N., Demene,H., Teilleux,V., Huynh-Dinh,T., de Rocquigny,H., Fournie-Zaluski.M.C. and Roques,B.P. (1998) Structure of the complex between the HIV-1 nucleocapsid protein NCp7 and the single-stranded pentanucleotide d(ACGCC). J. Mol. Biol., 283, 419-434.
-
-
-
-
12
-
-
0034716939
-
NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform
-
Amarasinghe,G.K., De Guzman,R.N., Turner,R.B. and Summers,M.F. (2000) NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform. J. Mol. Biol., 299 145-156.
-
(2000)
J. Mol. Biol
, vol.299
, pp. 145-156
-
-
Amarasinghe, G.K.1
De Guzman, R.N.2
Turner, R.B.3
Summers, M.F.4
-
13
-
-
0035833552
-
Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair
-
Walker,J.R., Corpina,R.A. and Goldberg,J. (2001) Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair. Nature, 412, 607-614.
-
(2001)
Nature
, vol.412
, pp. 607-614
-
-
Walker, J.R.1
Corpina, R.A.2
Goldberg, J.3
-
14
-
-
0034161571
-
Tailed duplex DNA is the preferred substrate for Rad51 protein-mediated homologous pairing
-
Mazin,A.V., Zaitseva,E., Sung,P. and Kowalczykowski,S.C. (2000) Tailed duplex DNA is the preferred substrate for Rad51 protein-mediated homologous pairing. EMBO J., 19, 1148-1156.
-
(2000)
EMBO J
, vol.19
, pp. 1148-1156
-
-
Mazin, A.V.1
Zaitseva, E.2
Sung, P.3
Kowalczykowski, S.C.4
-
15
-
-
31944446215
-
Resolving the motional modes that code for RNA adaptation
-
Zhang,Q., Sun,X., Watt,E.D. and Al-Hashimi,H.M. (2006) Resolving the motional modes that code for RNA adaptation. Science, 311, 653-656.
-
(2006)
Science
, vol.311
, pp. 653-656
-
-
Zhang, Q.1
Sun, X.2
Watt, E.D.3
Al-Hashimi, H.M.4
-
16
-
-
0036898865
-
Single-molecule fluorescence of nucleic acids
-
Mollova,E.T. (2002) Single-molecule fluorescence of nucleic acids. Curr. Opin. Chem. Biol., 6, 823-828.
-
(2002)
Curr. Opin. Chem. Biol
, vol.6
, pp. 823-828
-
-
Mollova, E.T.1
-
17
-
-
0014669561
-
-
Ward,D.C., Reich,E. and Stryer,L. (1969) Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives. J. Biol. Chem., 244, 1228-1237.
-
Ward,D.C., Reich,E. and Stryer,L. (1969) Fluorescence studies of nucleotides and polynucleotides. I. Formycin, 2-aminopurine riboside, 2,6-diaminopurine riboside, and their derivatives. J. Biol. Chem., 244, 1228-1237.
-
-
-
-
18
-
-
0035793105
-
2-Aminopurine fluorescence quenching and lifetimes: Role of base stacking
-
Jean,J.M. and Hall,K.B. (2001) 2-Aminopurine fluorescence quenching and lifetimes: Role of base stacking. Proc. Natl Acad. Sci. USA, 98 37-41.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 37-41
-
-
Jean, J.M.1
Hall, K.B.2
-
19
-
-
3543088541
-
Stacking-unstacking dynamics of oligodeoxynucleotide trimers
-
Jean,J.M. and Hall,K.B. (2004) Stacking-unstacking dynamics of oligodeoxynucleotide trimers. Biochemistry, 43, 10277-10284.
-
(2004)
Biochemistry
, vol.43
, pp. 10277-10284
-
-
Jean, J.M.1
Hall, K.B.2
-
20
-
-
0037032244
-
2-Aminopurine: A probe of structural dynamics and charge transfer in DNA and DNA:RNA hybrids
-
O'Neill,M.A. and Barton,J.K. (2002) 2-Aminopurine: A probe of structural dynamics and charge transfer in DNA and DNA:RNA hybrids. J. Am. Chem. Soc., 124, 13053-13066.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 13053-13066
-
-
O'Neill, M.A.1
Barton, J.K.2
-
21
-
-
0037120095
-
Femtosecond charge transfer dynamics of a modified DNA base: 2-aminopurine in complexes with nucleotides
-
Fiebig,T., Wan,C. and Zewail,A.H. (2002) Femtosecond charge transfer dynamics of a modified DNA base: 2-aminopurine in complexes with nucleotides. Chem. Phys. Chem., 3, 781-788.
-
(2002)
Chem. Phys. Chem
, vol.3
, pp. 781-788
-
-
Fiebig, T.1
Wan, C.2
Zewail, A.H.3
-
22
-
-
0034687675
-
Femtosecond direct observation of charge transfer between bases in DNA
-
Wan,C., Fiebig,T., Schiemann,O., Barton,J.K. and Zewail,A.H. (2000) Femtosecond direct observation of charge transfer between bases in DNA. Proc. Natl Acad. Sci. USA, 97, 14052-14055.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 14052-14055
-
-
Wan, C.1
Fiebig, T.2
Schiemann, O.3
Barton, J.K.4
Zewail, A.H.5
-
23
-
-
4344579386
-
Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 PAR RNA
-
Bradrick,T.D. and Marino,J.P. (2004) Ligand-induced changes in 2-aminopurine fluorescence as a probe for small molecule binding to HIV-1 PAR RNA. RNA, 10, 1459-1468.
-
(2004)
RNA
, vol.10
, pp. 1459-1468
-
-
Bradrick, T.D.1
Marino, J.P.2
-
24
-
-
23944512612
-
Structural heterogeneity in DNA: Temperature dependence of 2-aminopurine fluorescence in dinucleotides
-
Somsen,O.J., Keukens,L.B., de Keijzer,M.N., van Hoek,A. and van Amerongen,H. (2005) Structural heterogeneity in DNA: Temperature dependence of 2-aminopurine fluorescence in dinucleotides. Chem. Phys. Chem., 6, 1622-1627.
-
(2005)
Chem. Phys. Chem
, vol.6
, pp. 1622-1627
-
-
Somsen, O.J.1
Keukens, L.B.2
de Keijzer, M.N.3
van Hoek, A.4
van Amerongen, H.5
-
25
-
-
0035969959
-
Probing structure and dynamics of DNA with 2-aminopurine: Effects of local environment on fluorescence
-
Rachofsky,E.L., Osman,R. and Ross,J.B. (2001) Probing structure and dynamics of DNA with 2-aminopurine: Effects of local environment on fluorescence. Biochemistry, 40, 946-956.
-
(2001)
Biochemistry
, vol.40
, pp. 946-956
-
-
Rachofsky, E.L.1
Osman, R.2
Ross, J.B.3
-
26
-
-
1642347123
-
Fluorescence-based approach for detecting and characterizing antibiotic-induced conformational changes in ribosomal RNA: Comparing aminoglycoside binding to prokaryotic and eukaryotic ribosomal RNA sequences
-
Kaul,M., Barbieri,C.M. and Pilch,D.S. (2004) Fluorescence-based approach for detecting and characterizing antibiotic-induced conformational changes in ribosomal RNA: Comparing aminoglycoside binding to prokaryotic and eukaryotic ribosomal RNA sequences. J. Am. Chem. Soc. 126, 3447-3453.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 3447-3453
-
-
Kaul, M.1
Barbieri, C.M.2
Pilch, D.S.3
-
27
-
-
28544438811
-
Using 2-aminopurine fluorescence to detect bacteriophage T4 DNA polymerase-DNA complexes that are important for primer extension and proofreading reactions
-
Hariharan,C. and Reha-Krantz,L.J. (2005) Using 2-aminopurine fluorescence to detect bacteriophage T4 DNA polymerase-DNA complexes that are important for primer extension and proofreading reactions. Biochemistry, 44, 15674-15684.
-
(2005)
Biochemistry
, vol.44
, pp. 15674-15684
-
-
Hariharan, C.1
Reha-Krantz, L.J.2
-
28
-
-
34250348104
-
Site-specific dynamics of strands in ss- and dsDNA as revealed by time-domain fluorescence of 2-aminopurine
-
Ramreddy,T., Rao,B.J. and Krishnamoorthy,G. (2007) Site-specific dynamics of strands in ss- and dsDNA as revealed by time-domain fluorescence of 2-aminopurine. J. Phys. Chem. B, 111, 5757-5766.
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 5757-5766
-
-
Ramreddy, T.1
Rao, B.J.2
Krishnamoorthy, G.3
-
29
-
-
0033593039
-
Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: A fluorescence study
-
Vuilleumier,C., Bombarda,E., Morellet,N., Gerard,D., Roques,B.P. and Mely,Y. (1999) Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: A fluorescence study. Biochemistry, 38, 16816-16825.
-
(1999)
Biochemistry
, vol.38
, pp. 16816-16825
-
-
Vuilleumier, C.1
Bombarda, E.2
Morellet, N.3
Gerard, D.4
Roques, B.P.5
Mely, Y.6
-
30
-
-
0031935140
-
Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides
-
Fisher,R.J., Rein,A., Fivash,M., Urbaneja,M.A., Casas-Finet,J.R., Medaglia,M. and Henderson,L.E. (1998) Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides. J. Virol., 72, 1902-1909.
-
(1998)
J. Virol
, vol.72
, pp. 1902-1909
-
-
Fisher, R.J.1
Rein, A.2
Fivash, M.3
Urbaneja, M.A.4
Casas-Finet, J.R.5
Medaglia, M.6
Henderson, L.E.7
-
31
-
-
0025840486
-
First large scale chemical synthesis of the 72 amino acid HIV-1 nucleocapsid protein NCp7 in an active form
-
de Rocquigny,H., Ficheux,D., Gabus,C., Fournie-Zaluski,M.C., Darlix,J.L. and Roques,B.P. (1991) First large scale chemical synthesis of the 72 amino acid HIV-1 nucleocapsid protein NCp7 in an active form. Biochem. Biophys. Res. Commun., 180, 1010-1018.
-
(1991)
Biochem. Biophys. Res. Commun
, vol.180
, pp. 1010-1018
-
-
de Rocquigny, H.1
Ficheux, D.2
Gabus, C.3
Fournie-Zaluski, M.C.4
Darlix, J.L.5
Roques, B.P.6
-
32
-
-
0036298272
-
HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence
-
Bernacchi,S., Stoylov,S., Piemont,E., Ficheux,D., Roques,B.P., Darlix,J.L. and Mely,Y. (2002) HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence. J. Mol. Biol., 317, 385-399.
-
(2002)
J. Mol. Biol
, vol.317
, pp. 385-399
-
-
Bernacchi, S.1
Stoylov, S.2
Piemont, E.3
Ficheux, D.4
Roques, B.P.5
Darlix, J.L.6
Mely, Y.7
-
34
-
-
0019201754
-
Effect of fibrational motion on fluorescence depolarization and nuclear magnetic resonance relaxation in macromolecules and membranes
-
Lipari,G. and Szabo,A. (1980) Effect of fibrational motion on fluorescence depolarization and nuclear magnetic resonance relaxation in macromolecules and membranes. Biophys. J., 30, 489-506.
-
(1980)
Biophys. J
, vol.30
, pp. 489-506
-
-
Lipari, G.1
Szabo, A.2
-
35
-
-
0038750927
-
Steady-state and time-revolved fluorescence studies indicate an unusual conformation of 2-aminopurine within ATAT and TATA duplex DNA sequences
-
Rai,P., Cole,T.D., Thompson,E., Millar,D.P. and Linn,S. (2003) Steady-state and time-revolved fluorescence studies indicate an unusual conformation of 2-aminopurine within ATAT and TATA duplex DNA sequences. Nucleic Acids Res., 31, 2323-2332.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2323-2332
-
-
Rai, P.1
Cole, T.D.2
Thompson, E.3
Millar, D.P.4
Linn, S.5
-
36
-
-
64849087405
-
Dynamics of DNA and protein-DNA complexes viewed through time-domain fluorescence
-
Geddes,C. and Lakowicz,J.R, eds, New York
-
Nag,N., Ramreddy,T., Kombrabail,M., Krishna Mohan,P.M., D'Souza,J., Rao,B.J., Duportail,G., Mely,Y. and Krishnamoorthy,G. (2006) Dynamics of DNA and protein-DNA complexes viewed through time-domain fluorescence. In Geddes,C. and Lakowicz,J.R. (eds), Reviews in Fluorescence, Springer Science, New York, Vol. 3, pp. 311-340.
-
(2006)
Reviews in Fluorescence, Springer Science
, vol.3
, pp. 311-340
-
-
Nag, N.1
Ramreddy, T.2
Kombrabail, M.3
Krishna Mohan, P.M.4
D'Souza, J.5
Rao, B.J.6
Duportail, G.7
Mely, Y.8
Krishnamoorthy, G.9
-
37
-
-
0025845771
-
Dynamics of mismatched base pairs in DNA
-
Guest,C.R., Hochstrasser,R.A., Sowers,L.C. and Millar,D.P. (1991) Dynamics of mismatched base pairs in DNA. Biochemistry, 30, 3271-3279.
-
(1991)
Biochemistry
, vol.30
, pp. 3271-3279
-
-
Guest, C.R.1
Hochstrasser, R.A.2
Sowers, L.C.3
Millar, D.P.4
-
38
-
-
0028128641
-
Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption
-
Xu,D., Evans,K.O. and Nordlund,T.M. (1994) Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption. Biochemistry, 33, 9592-9599.
-
(1994)
Biochemistry
, vol.33
, pp. 9592-9599
-
-
Xu, D.1
Evans, K.O.2
Nordlund, T.M.3
-
39
-
-
0034896734
-
Probing the structure and dynamics of a DNA hairpin by ultrafast quenching and fluorescence depolarization
-
Larsen,O.F., van Stokkum,I.H., Gobets,B., van Grondelle,R. and van Amerongen,H. (2001) Probing the structure and dynamics of a DNA hairpin by ultrafast quenching and fluorescence depolarization. Biophys. J. 81, 1115-1126.
-
(2001)
Biophys. J
, vol.81
, pp. 1115-1126
-
-
Larsen, O.F.1
van Stokkum, I.H.2
Gobets, B.3
van Grondelle, R.4
van Amerongen, H.5
-
40
-
-
20844463873
-
Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis
-
Beltz,H., Clauss,C., Piemont,E., Ficheux,D., Gorelick,R.J., Roques,B., Gabus,C., Darlix,J.L., de Rocquigny,H. et al. (2005) Structural determinants of HIV-1 nucleocapsid protein for cTAR DNA binding and destabilization, and correlation with inhibition of self-primed DNA synthesis. J. Mol. Biol., 348, 1113-1126.
-
(2005)
J. Mol. Biol
, vol.348
, pp. 1113-1126
-
-
Beltz, H.1
Clauss, C.2
Piemont, E.3
Ficheux, D.4
Gorelick, R.J.5
Roques, B.6
Gabus, C.7
Darlix, J.L.8
de Rocquigny, H.9
-
41
-
-
0029876943
-
Zinc binding to the HIV-1 nucleocapsid protein: A thermodynamic investigation by fluorescence spectroscopy
-
Mely,Y., De Rocquigny,H., Morellet,N., Roques,B.P. and Gerad,D. (1996) Zinc binding to the HIV-1 nucleocapsid protein: A thermodynamic investigation by fluorescence spectroscopy. Biochemistry, 35 5175-5182.
-
(1996)
Biochemistry
, vol.35
, pp. 5175-5182
-
-
Mely, Y.1
De Rocquigny, H.2
Morellet, N.3
Roques, B.P.4
Gerad, D.5
-
42
-
-
32644434640
-
Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides
-
Fisher,R.J., Fivash,M.J., Stephen,A.G., Hagan,N.A., Shenoy,S.R., Medaglia,M.V., Smith,L.R., Worthy,K.M., Simpson,J.T. et al. (2006) Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides. Nucleic Acids Res., 34, 472-484.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 472-484
-
-
Fisher, R.J.1
Fivash, M.J.2
Stephen, A.G.3
Hagan, N.A.4
Shenoy, S.R.5
Medaglia, M.V.6
Smith, L.R.7
Worthy, K.M.8
Simpson, J.T.9
-
43
-
-
33750016312
-
Rapid kinetics of protein-nucleic acid interaction is a major component of HIV-1 nucleocapsid protein's nucleic acid chaperone function
-
Cruceanu,M., Gorelick,R.J., Musier-Forsyth,K., Rouzina,I. and Williams,M.C. (2006) Rapid kinetics of protein-nucleic acid interaction is a major component of HIV-1 nucleocapsid protein's nucleic acid chaperone function. J. Mol. Biol., 363, 867-877.
-
(2006)
J. Mol. Biol
, vol.363
, pp. 867-877
-
-
Cruceanu, M.1
Gorelick, R.J.2
Musier-Forsyth, K.3
Rouzina, I.4
Williams, M.C.5
-
44
-
-
0035814801
-
Phosphorescence and optically detected magnetic resonance of HIV-1 nucleocapsid protein complexes with stem-loop sequences of the genomic Psi-Tecognition element
-
Maki,A.H., Ozarowski,A., Misra,A., Urbaneja,M.A. and Casas-Finet,J.R. (2001) Phosphorescence and optically detected magnetic resonance of HIV-1 nucleocapsid protein complexes with stem-loop sequences of the genomic Psi-Tecognition element. Biochemistry, 40, 1403-1412.
-
(2001)
Biochemistry
, vol.40
, pp. 1403-1412
-
-
Maki, A.H.1
Ozarowski, A.2
Misra, A.3
Urbaneja, M.A.4
Casas-Finet, J.R.5
-
45
-
-
0035861980
-
Stem-loop SL4 of the HIV-1 psi RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition
-
Amarasinghe,G.K., Zhou,J., Miskimon,M., Chancellor,K.J., McDonald,J.A., Matthews,A.G., Miller,R.R., Rouse,M.D. and Summers,M.F. (2001) Stem-loop SL4 of the HIV-1 psi RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition. J. Mol. Biol., 314, 961-970.
-
(2001)
J. Mol. Biol
, vol.314
, pp. 961-970
-
-
Amarasinghe, G.K.1
Zhou, J.2
Miskimon, M.3
Chancellor, K.J.4
McDonald, J.A.5
Matthews, A.G.6
Miller, R.R.7
Rouse, M.D.8
Summers, M.F.9
-
46
-
-
0033583086
-
Binding properties of the human immunodeficiency vinis type 1 nucleocapsid protein p7 to a model RNA: Elucidation of the structural determinants for function
-
Urbaneja,M.A., Kane,B.P., Johnson,D.G., Gorelick,R.J., Henderson,L.E. and Casas-Finet,J.R. (1999) Binding properties of the human immunodeficiency vinis type 1 nucleocapsid protein p7 to a model RNA: elucidation of the structural determinants for function. J. Mol. Biol., 287, 59-75.
-
(1999)
J. Mol. Biol
, vol.287
, pp. 59-75
-
-
Urbaneja, M.A.1
Kane, B.P.2
Johnson, D.G.3
Gorelick, R.J.4
Henderson, L.E.5
Casas-Finet, J.R.6
-
47
-
-
0033020588
-
Time-resolved fluorescence investigation of the human immunodeficiency virus type 1 nucleocapsid protein: Influence of the binding of nucleic acids
-
Bombarda,E., Ababou,A., Vuilleumier,C., Gerard,D., Roques,B.P., Piemont,E. and Mely,Y. (1999) Time-resolved fluorescence investigation of the human immunodeficiency virus type 1 nucleocapsid protein: influence of the binding of nucleic acids. Biophys. J., 76, 1561-1570.
-
(1999)
Biophys. J
, vol.76
, pp. 1561-1570
-
-
Bombarda, E.1
Ababou, A.2
Vuilleumier, C.3
Gerard, D.4
Roques, B.P.5
Piemont, E.6
Mely, Y.7
-
48
-
-
0032570327
-
The annealing of tRNA3Lys to human immunodeficiency virus type 1 primer binding site is critically dependent on the NCp7 zinc fingers structure
-
Remy,E., de Rocquigny,H., Petitjean,P., Muriaux,D., Theilleux,V., Paoletti,J. and Roques,B.P. (1998) The annealing of tRNA3Lys to human immunodeficiency virus type 1 primer binding site is critically dependent on the NCp7 zinc fingers structure. J. Biol. Chem., 273, 4819-4822.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 4819-4822
-
-
Remy, E.1
de Rocquigny, H.2
Petitjean, P.3
Muriaux, D.4
Theilleux, V.5
Paoletti, J.6
Roques, B.P.7
-
49
-
-
0037027319
-
2-Aminopurine electronic structure and fluorescence properties in DNA
-
Jean,J.M. and Hall,K.B. (2002) 2-Aminopurine electronic structure and fluorescence properties in DNA. Biochemistry, 41, 13152-13161.
-
(2002)
Biochemistry
, vol.41
, pp. 13152-13161
-
-
Jean, J.M.1
Hall, K.B.2
-
50
-
-
0344443358
-
DNA condensation by the nucleocapsid protein of HIV-1: A mechanism ensuring DNA protection
-
Krishnamoorthy,G., Roques,B., Darlix,J.L. and Mely,Y. (2003) DNA condensation by the nucleocapsid protein of HIV-1: A mechanism ensuring DNA protection. Nucleic Acids Res., 31, 5425-5432.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5425-5432
-
-
Krishnamoorthy, G.1
Roques, B.2
Darlix, J.L.3
Mely, Y.4
-
51
-
-
0030916603
-
Recent solution structures of RNA and its complexes with drugs, peptides and proteins
-
Ramos,A., Gubser,C.C. and Varani,G. (1997) Recent solution structures of RNA and its complexes with drugs, peptides and proteins. Curr. Opin. Struct. Biol., 7, 317-323.
-
(1997)
Curr. Opin. Struct. Biol
, vol.7
, pp. 317-323
-
-
Ramos, A.1
Gubser, C.C.2
Varani, G.3
-
52
-
-
0035838382
-
Current topics in RNA-protein recognition: Control of specificity and biological function through induced fit and conformational capture
-
Leulliot,N. and Varani,G. (2001) Current topics in RNA-protein recognition: Control of specificity and biological function through induced fit and conformational capture. Biochemistry, 40, 7947-7956.
-
(2001)
Biochemistry
, vol.40
, pp. 7947-7956
-
-
Leulliot, N.1
Varani, G.2
-
53
-
-
2942739181
-
Structure of the His44→ Ala single point mutant of the distal finger motif of HIV-1 nucleocapsid protein: A combined NMR, molecular dynamics simulation, and fluorescence study
-
Stote,R.H., Kellenberger,E., Muller,H., Bombarda,E., Roques,B.P., Kieffer,B. and Mely,Y. (2004) Structure of the His44→ Ala single point mutant of the distal finger motif of HIV-1 nucleocapsid protein: A combined NMR, molecular dynamics simulation, and fluorescence study. Biochemistry, 43, 7687-7697.
-
(2004)
Biochemistry
, vol.43
, pp. 7687-7697
-
-
Stote, R.H.1
Kellenberger, E.2
Muller, H.3
Bombarda, E.4
Roques, B.P.5
Kieffer, B.6
Mely, Y.7
-
54
-
-
0035932997
-
Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching
-
Williams,M.C., Rouzina,I., Wenner,J.R., Gorelick,R.J., Musier-Forsyth,K. and Bloomfield,V.A. (2001) Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching. Proc. Natl Acad. Sci. USA, 98, 6121-6126.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 6121-6126
-
-
Williams, M.C.1
Rouzina, I.2
Wenner, J.R.3
Gorelick, R.J.4
Musier-Forsyth, K.5
Bloomfield, V.A.6
-
55
-
-
0037453234
-
Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7
-
Beltz,H., Azoulay,J., Bernacchi,S., Clamme,J.P., Ficheux,D., Roques,B., Darlix,J.L. and Mely,Y. (2003) Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7. J. Mol. Biol., 328, 95-108.
-
(2003)
J. Mol. Biol
, vol.328
, pp. 95-108
-
-
Beltz, H.1
Azoulay, J.2
Bernacchi, S.3
Clamme, J.P.4
Ficheux, D.5
Roques, B.6
Darlix, J.L.7
Mely, Y.8
-
56
-
-
0037459094
-
Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations
-
Azoulay,J., Clamme,J.P., Darlix,J.L., Roques,B.P. and Mely,Y. (2003) Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations. J. Mol. Biol., 326, 691-700.
-
(2003)
J. Mol. Biol
, vol.326
, pp. 691-700
-
-
Azoulay, J.1
Clamme, J.P.2
Darlix, J.L.3
Roques, B.P.4
Mely, Y.5
-
57
-
-
27744552000
-
Single-molecule FRET studies of important intermediates in the nucleocapsid-protein-chaperoned minus-strand transfer step in HIV-1 reverse transcription
-
Liu,H.W., Cosa,G., Landes,C.F., Zeng,Y., Kovaleski,B.J., Mullen,D.G., Barany,G., Musier-Forsyth,K. and Barbara,P.F. (2005) Single-molecule FRET studies of important intermediates in the nucleocapsid-protein-chaperoned minus-strand transfer step in HIV-1 reverse transcription. Biophys. J., 89, 3470-3479.
-
(2005)
Biophys. J
, vol.89
, pp. 3470-3479
-
-
Liu, H.W.1
Cosa, G.2
Landes, C.F.3
Zeng, Y.4
Kovaleski, B.J.5
Mullen, D.G.6
Barany, G.7
Musier-Forsyth, K.8
Barbara, P.F.9
-
58
-
-
34248397617
-
Insights on the role of nucleic acid/protein interactions in chaperoned nucleic acid rearrangements of HIV-1 reverse transcription
-
Liu,H.W., Zeng,Y., Landes,C.F., Kim,Y.J., Zhu,Y., Ma,X., Vo,M.N., Musier-Forsyth,K. and Barbara,P.F. (2007) Insights on the role of nucleic acid/protein interactions in chaperoned nucleic acid rearrangements of HIV-1 reverse transcription. Proc. Natl Acad. Sci. USA, 104, 5261-5267.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 5261-5267
-
-
Liu, H.W.1
Zeng, Y.2
Landes, C.F.3
Kim, Y.J.4
Zhu, Y.5
Ma, X.6
Vo, M.N.7
Musier-Forsyth, K.8
Barbara, P.F.9
-
59
-
-
0037260333
-
Nucleic acid conformational changes essential for HIV-1 nucleocapsid protein-mediated inhibition of self-priming in minus-strand transfer
-
Hong,M.K., Harbron,E.J., O'Connor,D.B., Guo,J., Barbara,P.F., Levin,J.G. and Musier-Forsyth,K. (2003) Nucleic acid conformational changes essential for HIV-1 nucleocapsid protein-mediated inhibition of self-priming in minus-strand transfer. J. Mol. Biol., 325, 1-10.
-
(2003)
J. Mol. Biol
, vol.325
, pp. 1-10
-
-
Hong, M.K.1
Harbron, E.J.2
O'Connor, D.B.3
Guo, J.4
Barbara, P.F.5
Levin, J.G.6
Musier-Forsyth, K.7
-
60
-
-
1942457321
-
Role of the structure of the top half of HIV-1 cTAR DNA on the nucleic acid destabilizing activity of the nucleocapsid protein NCp7
-
Beltz,H., Piemont,E., Schaub,E., Ficheux,D., Roques,B., Darlix,J.L. and Mely,Y. (2004) Role of the structure of the top half of HIV-1 cTAR DNA on the nucleic acid destabilizing activity of the nucleocapsid protein NCp7. J. Mol. Biol., 338, 711-723.
-
(2004)
J. Mol. Biol
, vol.338
, pp. 711-723
-
-
Beltz, H.1
Piemont, E.2
Schaub, E.3
Ficheux, D.4
Roques, B.5
Darlix, J.L.6
Mely, Y.7
-
61
-
-
16644394128
-
Secondary structure and secondary structure dynamics of DNA hairpins complexed with HIV-1 NC protein
-
Cosa,G., Harbron,E.J., Zeng,Y., Liu,H.W., O'Connor,D.B., Eta-Hosokawa,C., Musier-Forsyth,K. and Barbara,P.F. (2004) Secondary structure and secondary structure dynamics of DNA hairpins complexed with HIV-1 NC protein. Biophys. J., 87, 2759-2767.
-
(2004)
Biophys. J
, vol.87
, pp. 2759-2767
-
-
Cosa, G.1
Harbron, E.J.2
Zeng, Y.3
Liu, H.W.4
O'Connor, D.B.5
Eta-Hosokawa, C.6
Musier-Forsyth, K.7
Barbara, P.F.8
-
62
-
-
33644765201
-
Evidence for non-two-state kinetics in the nucleocapsid protein chaperoned opening of DNA hairpins
-
Cosa,G., Zeng,Y., Liu,H.W., Landes,C.F., Makarov,D.E., Musier-Forsyth,K. and Barbara,P.F. (2006) Evidence for non-two-state kinetics in the nucleocapsid protein chaperoned opening of DNA hairpins. J. Phys. Chem. B, 110, 2419-2426.
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 2419-2426
-
-
Cosa, G.1
Zeng, Y.2
Liu, H.W.3
Landes, C.F.4
Makarov, D.E.5
Musier-Forsyth, K.6
Barbara, P.F.7
-
63
-
-
35948977709
-
Investigating the mechanism of the nucleocapsid protein chaperoning of the second strand transfer during HIV-1 DNA synthesis
-
Ramalanjaona,N., Rocquigny,H.D., Millet,A., Ficheux,D., Darlix,J.L. and Mely,Y. (2007) Investigating the mechanism of the nucleocapsid protein chaperoning of the second strand transfer during HIV-1 DNA synthesis. J. Mol. Biol., 374, 1074-1053.
-
(2007)
J. Mol. Biol
, vol.374
, pp. 1074-1053
-
-
Ramalanjaona, N.1
Rocquigny, H.D.2
Millet, A.3
Ficheux, D.4
Darlix, J.L.5
Mely, Y.6
-
64
-
-
33748769274
-
Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein
-
Vo,M.N., Barany,G., Rouzina,I. and Musier-Forsyth,K. (2006) Mechanistic studies of mini-TAR RNA/DNA annealing in the absence and presence of HIV-1 nucleocapsid protein. J. Mol. Biol., 363, 244-261.
-
(2006)
J. Mol. Biol
, vol.363
, pp. 244-261
-
-
Vo, M.N.1
Barany, G.2
Rouzina, I.3
Musier-Forsyth, K.4
-
65
-
-
4344589738
-
HIV-1 nucleocapsid protein binds to the viral DNA initiation sequences and chaperones their kissing interactions
-
Egele,C., Schaub,E., Ramalanjaona,N., Piemont,E., Ficheux,D., Roques,B., Darlix,J.L. and Mely,Y. (2004) HIV-1 nucleocapsid protein binds to the viral DNA initiation sequences and chaperones their kissing interactions. J. Mol. Biol., 342, 453-466.
-
(2004)
J. Mol. Biol
, vol.342
, pp. 453-466
-
-
Egele, C.1
Schaub, E.2
Ramalanjaona, N.3
Piemont, E.4
Ficheux, D.5
Roques, B.6
Darlix, J.L.7
Mely, Y.8
-
66
-
-
29244449343
-
Investigation by fluorescence correlation spectroscopy of the chaperoning interactions of HIV-1 nucleocapsid protein with the viral DNA initiation sequences
-
Egele,C., Schaub,E., Piemont,E., de Rocquigny,H. and Mely,Y. (2005) Investigation by fluorescence correlation spectroscopy of the chaperoning interactions of HIV-1 nucleocapsid protein with the viral DNA initiation sequences. C. R. Biol., 328, 1041-1051.
-
(2005)
C. R. Biol
, vol.328
, pp. 1041-1051
-
-
Egele, C.1
Schaub, E.2
Piemont, E.3
de Rocquigny, H.4
Mely, Y.5
-
67
-
-
0037126724
-
Mechanism of nucleocapsid protein catalyzed structural isomerization of the dimerization initiation site of HIV-1
-
Rist,M.J. and Marino,J.P. (2002) Mechanism of nucleocapsid protein catalyzed structural isomerization of the dimerization initiation site of HIV-1. Biochemistry, 41, 14762-14770.
-
(2002)
Biochemistry
, vol.41
, pp. 14762-14770
-
-
Rist, M.J.1
Marino, J.P.2
|